Wall clock time and date at job start Tue Mar 31 2020 05:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47511 * 2 1 4 4 H 1.09004 * 109.46651 * 54.42147 * 3 2 1 5 5 C 1.50699 * 109.47209 * 174.42377 * 3 2 1 6 6 H 1.07996 * 119.99865 * 114.19891 * 5 3 2 7 7 C 1.37877 * 119.99961 * 294.19749 * 5 3 2 8 8 N 1.31513 * 119.99936 * 159.34867 * 7 5 3 9 9 Si 1.86803 * 120.00145 * 339.34721 * 7 5 3 10 10 H 1.48508 * 109.46924 * 270.00013 * 9 7 5 11 11 H 1.48495 * 109.47244 * 29.99875 * 9 7 5 12 12 H 1.48500 * 109.47266 * 150.00139 * 9 7 5 13 13 N 1.46499 * 109.47065 * 294.42726 * 3 2 1 14 14 C 1.34773 * 119.99879 * 84.99781 * 13 3 2 15 15 O 1.21550 * 120.00557 * 359.97438 * 14 13 3 16 16 C 1.47855 * 119.99622 * 179.97438 * 14 13 3 17 17 C 1.39573 * 120.14385 * 359.72367 * 16 14 13 18 18 C 1.37955 * 119.84976 * 179.74689 * 17 16 14 19 19 C 1.38365 * 120.14541 * 0.52952 * 18 17 16 20 20 C 1.50699 * 119.85300 * 179.72319 * 19 18 17 21 21 C 1.53004 * 109.47196 * 270.02241 * 20 19 18 22 22 C 1.53002 * 109.47124 * 64.99800 * 21 20 19 23 23 C 1.52999 * 109.47315 * 185.00296 * 21 20 19 24 24 C 1.38358 * 120.29044 * 359.74288 * 19 18 17 25 25 C 1.37956 * 120.14544 * 359.97438 * 24 19 18 26 26 H 1.09003 * 109.47087 * 300.00556 * 1 2 3 27 27 H 1.09005 * 109.47057 * 59.99608 * 1 2 3 28 28 H 1.08989 * 109.47183 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47149 * 240.00193 * 2 1 3 30 30 H 1.08996 * 109.47208 * 119.99805 * 2 1 3 31 31 H 0.97003 * 119.99675 * 354.92508 * 8 7 5 32 32 H 0.96997 * 119.99566 * 264.99631 * 13 3 2 33 33 H 1.07996 * 120.07301 * 359.97438 * 17 16 14 34 34 H 1.08004 * 119.93099 * 180.27687 * 18 17 16 35 35 H 1.09007 * 109.47239 * 30.01829 * 20 19 18 36 36 H 1.08995 * 109.47371 * 150.02216 * 20 19 18 37 37 H 1.09005 * 109.46806 * 305.00129 * 21 20 19 38 38 H 1.09005 * 109.47010 * 60.00454 * 22 21 20 39 39 H 1.08998 * 109.46913 * 180.02562 * 22 21 20 40 40 H 1.08997 * 109.47068 * 300.00227 * 22 21 20 41 41 H 1.08993 * 109.47211 * 59.99748 * 23 21 20 42 42 H 1.09001 * 109.46684 * 179.97438 * 23 21 20 43 43 H 1.09000 * 109.46638 * 299.99913 * 23 21 20 44 44 H 1.08000 * 119.92523 * 179.97438 * 24 19 18 45 45 H 1.08000 * 120.07018 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5974 1.9844 0.8359 5 6 3.5407 1.4447 0.1381 6 1 4.1572 1.8010 -0.6740 7 6 4.1267 0.9918 1.3011 8 7 5.3846 0.6081 1.2974 9 14 3.1338 0.9231 2.8819 10 1 3.2701 2.2113 3.6083 11 1 1.7040 0.6860 2.5586 12 1 3.6382 -0.1823 3.7356 13 7 1.6644 2.0933 -1.2576 14 6 0.4483 2.6598 -1.3861 15 8 -0.3370 2.6304 -0.4588 16 6 0.0693 3.3172 -2.6551 17 6 0.9709 3.3577 -3.7199 18 6 0.6091 3.9680 -4.9030 19 6 -0.6402 4.5487 -5.0317 20 6 -1.0263 5.2191 -6.3250 21 6 -0.6262 6.6950 -6.2737 22 6 0.8978 6.8080 -6.1983 23 6 -1.1286 7.4037 -7.5331 24 6 -1.5364 4.5169 -3.9781 25 6 -1.1893 3.9047 -2.7915 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8787 0.5738 0.4634 32 1 2.2909 2.1165 -1.9977 33 1 1.9480 2.9091 -3.6190 34 1 1.3040 3.9962 -5.7293 35 1 -0.5127 4.7321 -7.1541 36 1 -2.1039 5.1395 -6.4680 37 1 -1.0691 7.1610 -5.3934 38 1 1.3406 6.3419 -7.0785 39 1 1.1827 7.8594 -6.1612 40 1 1.2556 6.3031 -5.3010 41 1 -2.2142 7.3232 -7.5868 42 1 -0.8439 8.4552 -7.4962 43 1 -0.6857 6.9376 -8.4133 44 1 -2.5099 4.9723 -4.0848 45 1 -1.8897 3.8809 -1.9697 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613038725.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:31 Heat of formation + Delta-G solvation = -60.759099 kcal Electronic energy + Delta-G solvation = -22844.511381 eV Core-core repulsion = 19631.865281 eV Total energy + Delta-G solvation = -3212.646100 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30804 -39.87743 -37.25323 -36.81338 -34.54877 -33.54375 -32.18081 -31.86775 -29.27486 -27.98517 -27.60466 -24.49039 -23.81765 -23.52136 -21.94543 -21.25831 -20.77074 -19.99763 -18.55500 -17.45405 -16.62678 -16.53549 -16.09092 -15.92534 -15.41213 -15.19576 -15.16536 -14.79432 -14.52357 -14.46584 -14.33987 -14.11427 -13.76797 -13.59646 -13.22710 -12.99569 -12.84572 -12.68307 -12.53781 -12.48841 -12.32409 -11.99215 -11.76295 -11.71397 -11.62754 -11.55641 -11.47733 -11.18093 -10.83739 -10.49134 -9.94459 -9.90593 -9.59504 -8.82278 -6.44844 -0.11432 0.41780 1.46383 1.47553 1.70167 1.94007 2.41282 2.43835 2.89537 2.96273 3.69883 3.81214 3.92598 4.02314 4.07566 4.13251 4.28626 4.37056 4.37602 4.43630 4.46224 4.53037 4.74148 4.81665 4.82525 4.84782 4.89856 5.03432 5.05261 5.06706 5.09248 5.14447 5.18235 5.26827 5.32714 5.36388 5.43051 5.44607 5.51720 5.52157 5.63625 5.65289 5.68194 5.96142 6.00311 6.51268 6.80962 7.24734 7.39115 8.55702 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.027151 B = 0.003392 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.007171 B = 8253.541698 C = 8790.325659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.127 4.127 3 C 0.252 3.748 4 H 0.024 0.976 5 C -0.619 4.619 6 H 0.040 0.960 7 C 0.002 3.998 8 N -0.922 5.922 9 Si 1.068 2.932 10 H -0.276 1.276 11 H -0.254 1.254 12 H -0.277 1.277 13 N -0.699 5.699 14 C 0.541 3.459 15 O -0.581 6.581 16 C -0.155 4.155 17 C -0.090 4.090 18 C -0.121 4.121 19 C -0.051 4.051 20 C -0.076 4.076 21 C -0.090 4.090 22 C -0.154 4.154 23 C -0.144 4.144 24 C -0.125 4.125 25 C -0.072 4.072 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.261 0.739 32 H 0.400 0.600 33 H 0.129 0.871 34 H 0.149 0.851 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.046 0.954 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.151 0.849 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.909 10.169 -18.903 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.165 4.165 3 C 0.147 3.853 4 H 0.042 0.958 5 C -0.657 4.657 6 H 0.059 0.941 7 C -0.200 4.200 8 N -0.556 5.556 9 Si 0.890 3.110 10 H -0.202 1.202 11 H -0.178 1.178 12 H -0.203 1.203 13 N -0.347 5.347 14 C 0.330 3.670 15 O -0.463 6.463 16 C -0.159 4.159 17 C -0.109 4.109 18 C -0.139 4.139 19 C -0.052 4.052 20 C -0.113 4.113 21 C -0.108 4.108 22 C -0.212 4.212 23 C -0.202 4.202 24 C -0.143 4.143 25 C -0.091 4.091 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.236 0.764 33 H 0.147 0.853 34 H 0.167 0.833 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.169 0.831 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -14.299 9.785 -16.633 24.018 hybrid contribution 0.949 0.204 -1.524 1.807 sum -13.350 9.989 -18.157 24.651 Atomic orbital electron populations 1.21760 0.95645 1.00364 1.01248 1.22110 0.95237 0.98257 1.00938 1.18851 0.93620 0.89680 0.83113 0.95816 1.22201 0.91303 1.48219 1.03968 0.94138 1.26740 0.97010 0.91525 1.04681 1.70928 1.11547 1.42584 1.30565 0.83731 0.76117 0.77930 0.73212 1.20157 1.17790 1.20281 1.46069 1.15303 1.55974 1.17363 1.18820 0.81790 0.78274 0.88095 1.90684 1.51746 1.61541 1.42366 1.20001 0.97419 1.04485 0.93949 1.21471 0.98694 0.97858 0.92883 1.21238 0.97053 0.98207 0.97389 1.20377 0.93211 0.95146 0.96436 1.20804 1.02748 0.94662 0.93046 1.21065 0.96164 0.94403 0.99191 1.21960 0.95608 1.01687 1.01918 1.21821 1.01385 1.00169 0.96792 1.21247 1.01042 1.00062 0.91921 1.21306 0.94535 0.94826 0.98446 0.94173 0.93621 0.92334 0.92781 0.92837 0.93006 0.76443 0.85316 0.83296 0.89540 0.89374 0.91797 0.91764 0.92791 0.93482 0.91984 0.92576 0.92042 0.83121 0.85809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.40 8.53 71.98 0.61 -4.79 16 2 C -0.13 -5.69 5.03 30.59 0.15 -5.54 16 3 C 0.25 12.31 1.78 44.25 0.08 12.39 16 4 H 0.02 1.27 5.99 -2.38 -0.01 1.26 16 5 C -0.62 -34.19 8.97 25.60 0.23 -33.96 16 6 H 0.04 2.36 7.96 -2.91 -0.02 2.33 16 7 C 0.00 0.13 5.25 84.65 0.44 0.57 16 8 N -0.92 -55.83 13.70 21.45 0.29 -55.53 16 9 Si 1.07 50.98 26.33 68.60 1.81 52.79 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.25 -11.45 5.88 99.48 0.59 -10.87 16 12 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 13 N -0.70 -29.40 4.98 -448.96 -2.23 -31.63 16 14 C 0.54 21.89 6.37 86.79 0.55 22.44 16 15 O -0.58 -26.82 13.48 -3.87 -0.05 -26.87 16 16 C -0.16 -4.95 5.87 -20.09 -0.12 -5.07 16 17 C -0.09 -2.35 9.54 22.52 0.21 -2.13 16 18 C -0.12 -2.41 7.93 22.23 0.18 -2.24 16 19 C -0.05 -0.92 4.72 -19.81 -0.09 -1.02 16 20 C -0.08 -0.90 4.83 29.85 0.14 -0.75 16 21 C -0.09 -1.08 2.91 -10.79 -0.03 -1.11 16 22 C -0.15 -2.09 8.75 71.98 0.63 -1.46 16 23 C -0.14 -1.33 9.19 71.98 0.66 -0.67 16 24 C -0.12 -2.55 9.68 22.23 0.22 -2.34 16 25 C -0.07 -2.00 9.60 22.53 0.22 -1.79 16 26 H 0.04 1.71 7.88 -2.39 -0.02 1.69 16 27 H 0.04 1.87 5.63 -2.38 -0.01 1.86 16 28 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.05 2.46 5.64 -2.39 -0.01 2.45 16 31 H 0.26 15.76 8.73 -92.71 -0.81 14.95 16 32 H 0.40 15.12 6.56 -92.71 -0.61 14.51 16 33 H 0.13 3.19 6.41 -2.91 -0.02 3.17 16 34 H 0.15 2.21 8.03 -2.91 -0.02 2.19 16 35 H 0.09 0.87 8.08 -2.38 -0.02 0.85 16 36 H 0.09 0.85 8.08 -2.39 -0.02 0.83 16 37 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 40 H 0.05 0.78 6.26 -2.39 -0.01 0.77 16 41 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 45 H 0.12 3.61 7.65 -2.91 -0.02 3.59 16 Total: -1.00 -67.18 353.65 4.10 -63.08 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: 0.20 Total: 25.63 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 4.09 Total: -27.46 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -1.94 Total: -87.16 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.05 Total: -26.87 kcal Atomic # 14 Polarization: 50.98 SS G_CDS: 1.81 Total: 52.79 kcal Total: -67.18 4.10 -63.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038725.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.318 kcal (2) G-P(sol) polarization free energy of solvation -67.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds