Wall clock time and date at job start Tue Mar 31 2020 05:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47330 * 2 1 4 4 H 1.09003 * 109.47018 * 304.99818 * 3 2 1 5 5 C 1.50697 * 109.46840 * 185.00094 * 3 2 1 6 6 H 1.08004 * 119.99703 * 239.99504 * 5 3 2 7 7 C 1.37876 * 120.00268 * 60.00494 * 5 3 2 8 8 N 1.31515 * 119.99804 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 120.00136 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46720 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47112 * 119.99640 * 9 7 5 12 12 H 1.48489 * 109.47075 * 239.99571 * 9 7 5 13 13 N 1.46503 * 109.47053 * 64.99865 * 3 2 1 14 14 C 1.34772 * 120.00058 * 275.00038 * 13 3 2 15 15 O 1.21548 * 120.00010 * 0.02562 * 14 13 3 16 16 C 1.47846 * 120.00097 * 179.97438 * 14 13 3 17 17 C 1.39575 * 120.14516 * 179.97438 * 16 14 13 18 18 C 1.37954 * 119.84876 * 180.02562 * 17 16 14 19 19 C 1.38365 * 120.15102 * 0.02562 * 18 17 16 20 20 C 1.50692 * 119.85692 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.47279 * 90.00012 * 20 19 18 22 22 C 1.53006 * 109.47164 * 294.99874 * 21 20 19 23 23 C 1.52999 * 109.47269 * 175.00370 * 21 20 19 24 24 C 1.38361 * 120.28840 * 0.27347 * 19 18 17 25 25 C 1.37961 * 120.14535 * 359.44972 * 24 19 18 26 26 H 1.08997 * 109.47246 * 60.00062 * 1 2 3 27 27 H 1.09006 * 109.47328 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47088 * 299.99695 * 1 2 3 29 29 H 1.09001 * 109.46622 * 239.99714 * 2 1 3 30 30 H 1.09005 * 109.47157 * 120.00242 * 2 1 3 31 31 H 0.97001 * 119.99982 * 180.02562 * 8 7 5 32 32 H 0.96998 * 119.99789 * 94.99803 * 13 3 2 33 33 H 1.07998 * 120.07246 * 0.02562 * 17 16 14 34 34 H 1.08003 * 119.92891 * 179.97438 * 18 17 16 35 35 H 1.09006 * 109.47246 * 329.99504 * 20 19 18 36 36 H 1.09001 * 109.47456 * 210.00153 * 20 19 18 37 37 H 1.09000 * 109.47140 * 54.99823 * 21 20 19 38 38 H 1.09001 * 109.47002 * 59.99738 * 22 21 20 39 39 H 1.08993 * 109.46955 * 180.02562 * 22 21 20 40 40 H 1.09000 * 109.47050 * 300.00004 * 22 21 20 41 41 H 1.09001 * 109.47362 * 180.02562 * 23 21 20 42 42 H 1.09002 * 109.46716 * 299.99747 * 23 21 20 43 43 H 1.09000 * 109.47486 * 59.99665 * 23 21 20 44 44 H 1.07999 * 119.92811 * 179.70630 * 24 19 18 45 45 H 1.07996 * 120.07480 * 180.25609 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2280 8 7 3.4062 0.3366 -2.1729 9 14 6.0050 0.8810 -1.3819 10 1 6.5987 1.5459 -0.1941 11 1 6.4970 -0.5177 -1.4631 12 1 6.3990 1.6164 -2.6102 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3412 2.6319 0.4323 16 6 0.0439 3.3249 2.6304 17 6 -1.2158 3.9135 2.7528 18 6 -1.5744 4.5286 3.9344 19 6 -0.6884 4.5634 4.9966 20 6 -1.0868 5.2377 6.2840 21 6 -1.7572 4.2184 7.2073 22 6 -3.0679 3.7435 6.5767 23 6 -2.0492 4.8704 8.5603 24 6 0.5641 3.9873 4.8797 25 6 0.9332 3.3640 3.7056 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8292 -0.0618 -2.9496 32 1 2.2719 2.1231 1.9978 33 1 -1.9081 3.8873 1.9243 34 1 -2.5487 4.9848 4.0303 35 1 -1.7843 6.0475 6.0694 36 1 -0.2000 5.6419 6.7721 37 1 -1.0931 3.3660 7.3505 38 1 -2.8599 3.2790 5.6128 39 1 -3.5456 3.0178 7.2347 40 1 -3.7319 4.5959 6.4335 41 1 -2.5263 4.1441 9.2182 42 1 -1.1154 5.2087 9.0096 43 1 -2.7132 5.7228 8.4171 44 1 1.2528 4.0220 5.7109 45 1 1.9096 2.9110 3.6171 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613038726.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:34 Heat of formation + Delta-G solvation = -43.245128 kcal Electronic energy + Delta-G solvation = -22768.618621 eV Core-core repulsion = 19556.731984 eV Total energy + Delta-G solvation = -3211.886637 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.92049 -38.47767 -36.21474 -35.01095 -32.56117 -31.67002 -31.00560 -30.44055 -27.42374 -27.36601 -26.41042 -23.29267 -22.51346 -22.30361 -20.41948 -20.03654 -19.29266 -17.83695 -16.15207 -15.94063 -15.37720 -15.11608 -14.68873 -14.59323 -14.49685 -14.33418 -13.93608 -13.44542 -13.32640 -12.81940 -12.67335 -12.54403 -12.44743 -12.16363 -11.85731 -11.75571 -11.49464 -11.25097 -11.10268 -10.99112 -10.94559 -10.89001 -10.83428 -10.81236 -10.30345 -10.16824 -9.61952 -9.07210 -9.01646 -8.88825 -8.59060 -8.49882 -7.79809 -6.12227 -4.21582 1.06311 1.46494 3.23615 3.31424 3.33371 3.34677 4.09167 4.21745 4.38454 4.53866 4.59632 4.72139 4.89654 5.02418 5.05921 5.19183 5.24259 5.37714 5.39766 5.46344 5.49495 5.57692 5.64301 5.66276 5.75750 5.83981 6.01820 6.06315 6.07177 6.11626 6.41120 6.42272 6.48294 6.55817 6.58923 6.68605 6.98021 7.06851 7.22040 7.38125 7.46039 7.63042 7.74730 7.91091 8.18631 8.67386 8.78273 9.13554 9.45844 10.93197 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026769 B = 0.003236 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.743250 B = 8650.228838 C = 9216.058477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.127 4.127 3 C 0.269 3.731 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.702 5.702 14 C 0.540 3.460 15 O -0.546 6.546 16 C -0.125 4.125 17 C -0.064 4.064 18 C -0.127 4.127 19 C -0.067 4.067 20 C -0.077 4.077 21 C -0.092 4.092 22 C -0.152 4.152 23 C -0.147 4.147 24 C -0.127 4.127 25 C -0.086 4.086 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.038 0.962 29 H 0.099 0.901 30 H 0.031 0.969 31 H 0.264 0.736 32 H 0.387 0.613 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.123 0.877 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.617 7.646 18.409 21.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.068 0.932 5 C -0.572 4.572 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.349 5.349 14 C 0.326 3.674 15 O -0.426 6.426 16 C -0.128 4.128 17 C -0.083 4.083 18 C -0.145 4.145 19 C -0.068 4.068 20 C -0.115 4.115 21 C -0.110 4.110 22 C -0.209 4.209 23 C -0.205 4.205 24 C -0.145 4.145 25 C -0.105 4.105 26 H 0.069 0.931 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.220 0.780 33 H 0.151 0.849 34 H 0.141 0.859 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.141 0.859 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.118 7.499 17.519 21.125 hybrid contribution 1.359 -0.090 0.213 1.379 sum -7.759 7.410 17.731 20.724 Atomic orbital electron populations 1.21844 0.98339 0.98045 1.01273 1.21933 0.92645 0.99731 1.02286 1.18820 0.94256 0.89224 0.80915 0.93192 1.21264 0.90683 1.38944 1.06305 0.92064 1.24887 0.98614 0.94807 0.95378 1.69907 1.35025 1.37636 1.09354 0.86403 0.84874 0.77767 0.78127 1.19737 1.20871 1.20877 1.46460 1.14422 1.55488 1.18548 1.18196 0.82965 0.79321 0.86905 1.90729 1.51558 1.60248 1.40072 1.20344 0.95663 1.01658 0.95110 1.21277 0.95284 0.94285 0.97458 1.20975 0.99520 1.01123 0.92868 1.19972 0.93919 0.97587 0.95302 1.20714 1.00815 0.97402 0.92539 1.21085 0.97390 0.98088 0.94450 1.21938 0.96634 1.01037 1.01337 1.21853 1.01486 1.00650 0.96464 1.20924 0.96268 0.99553 0.97755 1.21383 0.99061 0.97483 0.92589 0.93120 0.95847 0.94274 0.88241 0.95041 0.92611 0.77955 0.84859 0.85893 0.90957 0.90950 0.91001 0.91866 0.92917 0.92795 0.92672 0.92716 0.92696 0.85910 0.85495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 3 C 0.27 6.84 2.24 -69.08 -0.15 6.69 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.12 8.73 -34.44 -0.30 -14.42 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.75 11.29 55.43 0.63 -24.12 16 9 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 N -0.70 -14.89 4.97 -55.88 -0.28 -15.17 16 14 C 0.54 11.19 6.34 -12.33 -0.08 11.11 16 15 O -0.55 -13.04 13.48 5.32 0.07 -12.97 16 16 C -0.12 -2.06 5.87 -104.97 -0.62 -2.67 16 17 C -0.06 -0.95 9.60 -39.19 -0.38 -1.32 16 18 C -0.13 -1.49 7.93 -39.64 -0.31 -1.81 16 19 C -0.07 -0.73 4.72 -104.53 -0.49 -1.22 16 20 C -0.08 -0.63 4.83 -27.89 -0.13 -0.77 16 21 C -0.09 -0.71 2.91 -90.62 -0.26 -0.97 16 22 C -0.15 -1.22 8.76 37.16 0.33 -0.90 16 23 C -0.15 -0.94 9.19 37.16 0.34 -0.59 16 24 C -0.13 -1.46 9.68 -39.64 -0.38 -1.84 16 25 C -0.09 -1.19 9.54 -39.18 -0.37 -1.56 16 26 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 27 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.87 5.64 -51.93 -0.29 0.58 16 29 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.39 7.17 6.57 -40.82 -0.27 6.90 16 33 H 0.13 2.02 7.65 -52.49 -0.40 1.62 16 34 H 0.12 1.18 8.03 -52.48 -0.42 0.76 16 35 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 36 H 0.07 0.53 8.08 -51.93 -0.42 0.12 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.60 6.26 -51.93 -0.33 0.27 16 39 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 45 H 0.13 1.60 6.41 -52.49 -0.34 1.27 16 LS Contribution 357.55 15.07 5.39 5.39 Total: -1.00 -29.86 357.55 -9.30 -39.17 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -7.34 Total: 6.81 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -2.75 Total: -14.70 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.35 Total: -39.29 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: 0.07 Total: -12.97 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.86 -9.30 -39.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038726.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.080 kcal (2) G-P(sol) polarization free energy of solvation -29.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds