Wall clock time and date at job start Tue Mar 31 2020 06:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 108.78957 * 2 1 4 4 C 1.45539 * 108.89839 * 118.55978 * 2 1 3 5 5 C 1.54238 * 112.40492 * 182.69302 * 4 2 1 6 6 C 1.50477 * 108.52806 * 280.02172 * 5 4 2 7 7 C 1.54003 * 112.54769 * 94.06608 * 6 5 4 8 8 C 1.54062 * 112.85647 * 318.44341 * 7 6 5 9 9 C 1.50475 * 112.41901 * 318.13680 * 8 7 6 10 10 H 1.08995 * 109.62732 * 334.29773 * 9 8 7 11 11 N 1.46501 * 109.62954 * 213.91288 * 9 8 7 12 12 C 1.39674 * 120.00235 * 84.99809 * 11 9 8 13 13 C 1.39006 * 120.03893 * 0.02562 * 12 11 9 14 14 C 1.38144 * 120.06405 * 179.97438 * 13 12 11 15 15 C 1.38174 * 120.14252 * 359.97438 * 14 13 12 16 16 C 1.38916 * 120.07785 * 0.02562 * 15 14 13 17 17 O 1.35749 * 120.03184 * 179.97438 * 16 15 14 18 18 C 1.34832 * 117.00086 * 174.48144 * 17 16 15 19 19 H 1.08004 * 120.00105 * 5.07621 * 18 17 16 20 20 C 1.38649 * 119.99866 * 185.08337 * 18 17 16 21 21 N 1.31562 * 120.00238 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99844 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47161 * 90.00065 * 22 20 18 24 24 H 1.48505 * 109.47244 * 209.99489 * 22 20 18 25 25 H 1.48495 * 109.47486 * 329.99642 * 22 20 18 26 26 C 1.38748 * 120.04285 * 179.72638 * 12 11 9 27 27 H 1.08999 * 109.46808 * 178.55263 * 1 2 3 28 28 H 1.09002 * 109.46834 * 298.55019 * 1 2 3 29 29 H 1.08996 * 109.47228 * 58.54880 * 1 2 3 30 30 H 1.08998 * 108.89666 * 303.44736 * 4 2 1 31 31 H 1.09002 * 108.89607 * 62.03501 * 4 2 1 32 32 H 1.08998 * 109.62759 * 39.73114 * 5 4 2 33 33 H 1.08997 * 109.62893 * 160.11868 * 5 4 2 34 34 H 1.08995 * 108.87892 * 214.92257 * 6 5 4 35 35 H 1.08999 * 108.87671 * 333.46809 * 6 5 4 36 36 H 1.08996 * 108.87518 * 197.51595 * 7 6 5 37 37 H 1.08999 * 108.71718 * 79.26018 * 7 6 5 38 38 H 1.08995 * 108.87926 * 197.40857 * 8 7 6 39 39 H 1.09007 * 108.87586 * 78.86216 * 8 7 6 40 40 H 0.97005 * 119.99884 * 265.00244 * 11 9 8 41 41 H 1.08007 * 119.96291 * 359.97438 * 13 12 11 42 42 H 1.08001 * 119.92852 * 180.02562 * 14 13 12 43 43 H 1.07999 * 119.96269 * 180.02562 * 15 14 13 44 44 H 0.97001 * 120.00045 * 179.97438 * 21 20 18 45 45 H 1.08004 * 120.07011 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8811 1.0319 0.0000 4 6 2.0014 -0.6583 1.2094 5 6 3.5394 -0.6448 1.3247 6 6 4.0938 -1.7407 0.4552 7 6 4.4788 -1.2419 -0.9500 8 6 3.4465 -0.2629 -1.5412 9 6 2.0294 -0.6974 -1.2819 10 1 1.9964 -1.7789 -1.1504 11 7 1.1820 -0.3131 -2.4134 12 6 1.0891 -1.1457 -3.5309 13 6 1.8001 -2.3396 -3.5702 14 6 1.7083 -3.1637 -4.6751 15 6 0.9096 -2.8048 -5.7439 16 6 0.1965 -1.6131 -5.7109 17 8 -0.5875 -1.2612 -6.7618 18 6 -1.3403 -0.1517 -6.6194 19 1 -1.2412 0.4581 -5.7334 20 6 -2.2416 0.2064 -7.6102 21 7 -2.3621 -0.5362 -8.6895 22 14 -3.2851 1.7432 -7.4125 23 1 -2.5670 2.9069 -7.9916 24 1 -4.5780 1.5579 -8.1191 25 1 -3.5398 1.9865 -5.9700 26 6 0.2823 -0.7853 -4.6006 27 1 -0.3633 -1.0273 -0.0260 28 1 -0.3633 0.4912 0.9027 29 1 -0.3633 0.5362 -0.8766 30 1 1.5780 -0.1502 2.0758 31 1 1.6582 -1.6929 1.2048 32 1 3.9233 0.3185 0.9889 33 1 3.8303 -0.8136 2.3615 34 1 4.9778 -2.1593 0.9361 35 1 3.3432 -2.5246 0.3544 36 1 4.5710 -2.0999 -1.6158 37 1 5.4449 -0.7405 -0.8906 38 1 3.6027 -0.1933 -2.6176 39 1 3.6002 0.7214 -1.0986 40 1 0.6853 0.5197 -2.3864 41 1 2.4250 -2.6230 -2.7361 42 1 2.2614 -4.0910 -4.7031 43 1 0.8396 -3.4515 -6.6061 44 1 -2.9930 -0.2858 -9.3825 45 1 -0.2753 0.1392 -4.5705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691073251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:08 Heat of formation + Delta-G solvation = -17.962279 kcal Electronic energy + Delta-G solvation = -23392.372883 eV Core-core repulsion = 20181.582593 eV Total energy + Delta-G solvation = -3210.790290 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.00409 -38.69487 -36.64811 -34.58680 -33.65240 -32.15631 -31.15243 -28.84840 -27.89901 -27.45306 -25.21083 -24.17826 -23.22732 -21.78553 -20.84149 -20.21669 -19.26614 -17.80138 -17.28095 -16.21785 -15.39650 -15.24483 -15.01751 -14.65591 -14.28416 -14.25172 -13.66984 -13.53837 -13.46063 -13.19064 -12.88073 -12.81201 -12.62769 -12.26776 -12.20036 -11.78906 -11.60048 -11.53093 -11.15369 -10.99439 -10.83711 -10.71020 -10.62123 -10.54178 -10.51000 -10.43560 -10.33870 -10.14015 -9.33823 -9.29818 -8.71430 -7.29297 -6.68754 -6.37094 -3.96182 2.44440 2.63886 3.16342 3.17229 3.21574 3.81847 4.02838 4.39161 4.48485 4.74947 4.77434 4.95779 4.99293 5.06695 5.17051 5.19900 5.28903 5.33491 5.42542 5.53876 5.59707 5.68005 5.73255 5.80528 5.82362 5.84825 5.95528 6.00346 6.05341 6.08535 6.13470 6.21351 6.24292 6.29784 6.34180 6.37564 6.46684 6.72905 6.74511 7.11866 7.20623 7.45687 7.55244 7.74552 8.09632 8.11306 8.29702 9.09243 9.82811 10.81465 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021579 B = 0.003904 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.217810 B = 7170.007536 C = 8085.736941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 H 0.068 0.932 4 C -0.111 4.111 5 C -0.118 4.118 6 C -0.121 4.121 7 C -0.114 4.114 8 C -0.136 4.136 9 C 0.167 3.833 10 H 0.079 0.921 11 N -0.748 5.748 12 C 0.252 3.748 13 C -0.279 4.279 14 C -0.041 4.041 15 C -0.238 4.238 16 C 0.190 3.810 17 O -0.180 6.180 18 C -0.388 4.388 19 H 0.090 0.910 20 C 0.038 3.962 21 N -0.866 5.866 22 Si 0.939 3.061 23 H -0.274 1.274 24 H -0.278 1.278 25 H -0.269 1.269 26 C -0.304 4.304 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.393 0.607 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.111 0.889 44 H 0.268 0.732 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.026 0.647 19.049 21.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.115 4.115 3 H 0.086 0.914 4 C -0.149 4.149 5 C -0.156 4.156 6 C -0.159 4.159 7 C -0.152 4.152 8 C -0.175 4.175 9 C 0.061 3.939 10 H 0.097 0.903 11 N -0.380 5.380 12 C 0.151 3.849 13 C -0.301 4.301 14 C -0.060 4.060 15 C -0.259 4.259 16 C 0.135 3.865 17 O -0.083 6.083 18 C -0.464 4.464 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.501 5.501 22 Si 0.764 3.236 23 H -0.200 1.200 24 H -0.203 1.203 25 H -0.193 1.193 26 C -0.327 4.327 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.228 0.772 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.129 0.871 44 H 0.078 0.922 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.952 0.460 18.721 21.207 hybrid contribution -0.687 1.180 0.103 1.369 sum 9.265 1.640 18.824 21.045 Atomic orbital electron populations 1.21887 0.94816 1.02365 1.01392 1.20297 0.96411 1.00107 0.94677 0.91357 1.20504 0.95681 1.01370 0.97296 1.21346 0.95293 0.99643 0.99278 1.21360 1.00792 0.98411 0.95309 1.21842 0.98266 0.99294 0.95809 1.21930 0.94831 0.98920 1.01777 1.20470 0.89047 0.99423 0.84968 0.90272 1.44758 1.52638 1.24209 1.16363 1.17448 0.92228 0.89390 0.85828 1.20106 1.10997 0.97793 1.01245 1.20371 0.95811 0.97357 0.92434 1.20023 1.06407 0.98098 1.01374 1.19064 0.89332 0.91648 0.86422 1.83986 1.48941 1.42424 1.32961 1.21289 1.17956 1.00612 1.06578 0.89241 1.25257 0.97141 0.99189 0.94986 1.70044 1.34989 1.37522 1.07558 0.85750 0.78964 0.80227 0.78677 1.19997 1.20321 1.19336 1.20499 1.10962 1.04937 0.96340 0.92434 0.93090 0.92235 0.92077 0.91904 0.91621 0.92115 0.92491 0.92019 0.92024 0.92478 0.91052 0.92431 0.77224 0.87786 0.87377 0.87053 0.92173 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.61 37.16 0.32 -1.22 16 2 C -0.10 -0.94 2.03 -93.49 -0.19 -1.13 16 3 H 0.07 0.66 7.47 -51.93 -0.39 0.27 16 4 C -0.11 -0.94 4.45 -29.60 -0.13 -1.07 16 5 C -0.12 -0.93 5.61 -27.34 -0.15 -1.08 16 6 C -0.12 -1.02 5.31 -27.47 -0.15 -1.16 16 7 C -0.11 -1.10 5.85 -25.65 -0.15 -1.25 16 8 C -0.14 -1.53 4.91 -27.44 -0.13 -1.66 16 9 C 0.17 1.98 1.49 -68.54 -0.10 1.88 16 10 H 0.08 1.02 5.36 -51.93 -0.28 0.74 16 11 N -0.75 -11.08 4.40 -52.78 -0.23 -11.31 16 12 C 0.25 4.73 6.51 -83.81 -0.55 4.19 16 13 C -0.28 -5.00 9.16 -39.33 -0.36 -5.36 16 14 C -0.04 -0.76 10.03 -39.64 -0.40 -1.16 16 15 C -0.24 -5.29 9.99 -39.35 -0.39 -5.68 16 16 C 0.19 4.76 6.65 -39.14 -0.26 4.50 16 17 O -0.18 -5.29 9.76 0.05 0.00 -5.29 16 18 C -0.39 -11.09 9.49 30.88 0.29 -10.80 16 19 H 0.09 2.38 5.20 -52.48 -0.27 2.11 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 21 N -0.87 -25.90 13.67 55.48 0.76 -25.14 16 22 Si 0.94 20.92 29.55 -169.99 -5.02 15.90 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 C -0.30 -6.79 9.01 -39.20 -0.35 -7.14 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.46 8.11 -51.93 -0.42 0.04 16 29 H 0.06 0.67 6.35 -51.93 -0.33 0.34 16 30 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.06 0.56 7.47 -51.93 -0.39 0.17 16 32 H 0.07 0.53 6.98 -51.93 -0.36 0.17 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.55 6.63 -51.93 -0.34 0.21 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.97 7.83 -51.93 -0.41 0.57 16 39 H 0.06 0.60 6.63 -51.92 -0.34 0.26 16 40 H 0.39 5.54 7.08 -40.82 -0.29 5.25 16 41 H 0.10 1.63 6.20 -52.48 -0.33 1.31 16 42 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.11 2.41 8.06 -52.49 -0.42 1.99 16 44 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.12 2.76 5.63 -52.48 -0.30 2.47 16 LS Contribution 343.44 15.07 5.18 5.18 Total: -1.00 -30.60 343.44 -9.08 -39.68 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.96 Total: 8.17 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -2.80 Total: -27.19 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.53 Total: -36.46 kcal Atomic # 8 Polarization: -5.29 SS G_CDS: 0.00 Total: -5.29 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.60 -9.08 -39.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691073251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.722 kcal (2) G-P(sol) polarization free energy of solvation -30.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds