Wall clock time and date at job start Tue Mar 31 2020 06:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 108.78957 * 2 1 4 4 C 1.45539 * 108.89839 * 118.55978 * 2 1 3 5 5 C 1.54238 * 112.40492 * 182.69302 * 4 2 1 6 6 C 1.50477 * 108.52806 * 280.02172 * 5 4 2 7 7 C 1.54003 * 112.54769 * 94.06608 * 6 5 4 8 8 C 1.54062 * 112.85647 * 318.44341 * 7 6 5 9 9 C 1.50475 * 112.41901 * 318.13680 * 8 7 6 10 10 H 1.08995 * 109.62732 * 334.29773 * 9 8 7 11 11 N 1.46501 * 109.62954 * 213.91288 * 9 8 7 12 12 C 1.39674 * 120.00235 * 84.99809 * 11 9 8 13 13 C 1.39006 * 120.03893 * 0.02562 * 12 11 9 14 14 C 1.38144 * 120.06405 * 179.97438 * 13 12 11 15 15 C 1.38174 * 120.14252 * 359.97438 * 14 13 12 16 16 C 1.38916 * 120.07785 * 0.02562 * 15 14 13 17 17 O 1.35749 * 120.03184 * 179.97438 * 16 15 14 18 18 C 1.34832 * 117.00086 * 174.48144 * 17 16 15 19 19 H 1.08004 * 120.00105 * 5.07621 * 18 17 16 20 20 C 1.38649 * 119.99866 * 185.08337 * 18 17 16 21 21 N 1.31562 * 120.00238 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99844 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47161 * 90.00065 * 22 20 18 24 24 H 1.48505 * 109.47244 * 209.99489 * 22 20 18 25 25 H 1.48495 * 109.47486 * 329.99642 * 22 20 18 26 26 C 1.38748 * 120.04285 * 179.72638 * 12 11 9 27 27 H 1.08999 * 109.46808 * 178.55263 * 1 2 3 28 28 H 1.09002 * 109.46834 * 298.55019 * 1 2 3 29 29 H 1.08996 * 109.47228 * 58.54880 * 1 2 3 30 30 H 1.08998 * 108.89666 * 303.44736 * 4 2 1 31 31 H 1.09002 * 108.89607 * 62.03501 * 4 2 1 32 32 H 1.08998 * 109.62759 * 39.73114 * 5 4 2 33 33 H 1.08997 * 109.62893 * 160.11868 * 5 4 2 34 34 H 1.08995 * 108.87892 * 214.92257 * 6 5 4 35 35 H 1.08999 * 108.87671 * 333.46809 * 6 5 4 36 36 H 1.08996 * 108.87518 * 197.51595 * 7 6 5 37 37 H 1.08999 * 108.71718 * 79.26018 * 7 6 5 38 38 H 1.08995 * 108.87926 * 197.40857 * 8 7 6 39 39 H 1.09007 * 108.87586 * 78.86216 * 8 7 6 40 40 H 0.97005 * 119.99884 * 265.00244 * 11 9 8 41 41 H 1.08007 * 119.96291 * 359.97438 * 13 12 11 42 42 H 1.08001 * 119.92852 * 180.02562 * 14 13 12 43 43 H 1.07999 * 119.96269 * 180.02562 * 15 14 13 44 44 H 0.97001 * 120.00045 * 179.97438 * 21 20 18 45 45 H 1.08004 * 120.07011 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8811 1.0319 0.0000 4 6 2.0014 -0.6583 1.2094 5 6 3.5394 -0.6448 1.3247 6 6 4.0938 -1.7407 0.4552 7 6 4.4788 -1.2419 -0.9500 8 6 3.4465 -0.2629 -1.5412 9 6 2.0294 -0.6974 -1.2819 10 1 1.9964 -1.7789 -1.1504 11 7 1.1820 -0.3131 -2.4134 12 6 1.0891 -1.1457 -3.5309 13 6 1.8001 -2.3396 -3.5702 14 6 1.7083 -3.1637 -4.6751 15 6 0.9096 -2.8048 -5.7439 16 6 0.1965 -1.6131 -5.7109 17 8 -0.5875 -1.2612 -6.7618 18 6 -1.3403 -0.1517 -6.6194 19 1 -1.2412 0.4581 -5.7334 20 6 -2.2416 0.2064 -7.6102 21 7 -2.3621 -0.5362 -8.6895 22 14 -3.2851 1.7432 -7.4125 23 1 -2.5670 2.9069 -7.9916 24 1 -4.5780 1.5579 -8.1191 25 1 -3.5398 1.9865 -5.9700 26 6 0.2823 -0.7853 -4.6006 27 1 -0.3633 -1.0273 -0.0260 28 1 -0.3633 0.4912 0.9027 29 1 -0.3633 0.5362 -0.8766 30 1 1.5780 -0.1502 2.0758 31 1 1.6582 -1.6929 1.2048 32 1 3.9233 0.3185 0.9889 33 1 3.8303 -0.8136 2.3615 34 1 4.9778 -2.1593 0.9361 35 1 3.3432 -2.5246 0.3544 36 1 4.5710 -2.0999 -1.6158 37 1 5.4449 -0.7405 -0.8906 38 1 3.6027 -0.1933 -2.6176 39 1 3.6002 0.7214 -1.0986 40 1 0.6853 0.5197 -2.3864 41 1 2.4250 -2.6230 -2.7361 42 1 2.2614 -4.0910 -4.7031 43 1 0.8396 -3.4515 -6.6061 44 1 -2.9930 -0.2858 -9.3825 45 1 -0.2753 0.1392 -4.5705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691073251.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:07 Heat of formation + Delta-G solvation = -34.797547 kcal Electronic energy + Delta-G solvation = -23393.102915 eV Core-core repulsion = 20181.582593 eV Total energy + Delta-G solvation = -3211.520322 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.14195 -40.27297 -38.28206 -35.78738 -34.56790 -34.16333 -32.28730 -30.47562 -29.31599 -28.35128 -27.23926 -25.14684 -23.98895 -23.44067 -22.32925 -21.16835 -20.25139 -19.57476 -18.98270 -17.43120 -16.83964 -16.68982 -16.00667 -15.96000 -15.72122 -15.51340 -15.46844 -14.75112 -14.70053 -14.36744 -14.20293 -13.95015 -13.75131 -13.48898 -13.44539 -13.16990 -12.93483 -12.60820 -12.57675 -12.44862 -12.26594 -12.11229 -11.79849 -11.54301 -11.46420 -11.33096 -11.24432 -11.21922 -10.98115 -10.86939 -10.55619 -9.09103 -8.44899 -8.18982 -6.13199 0.78039 0.94363 1.33745 1.44312 1.51566 2.18624 2.56626 2.90199 3.28124 3.56509 3.60898 3.72740 4.04785 4.19100 4.22053 4.23742 4.28401 4.37833 4.43412 4.50086 4.54345 4.62903 4.67465 4.77611 4.84275 4.90261 4.96831 5.02867 5.09232 5.12246 5.16632 5.17176 5.25686 5.30795 5.35432 5.39145 5.41564 5.47241 5.51079 5.54311 5.62606 5.77118 5.82595 6.06312 6.14000 6.65601 6.91150 7.00612 7.84330 8.78888 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021579 B = 0.003904 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.217810 B = 7170.007536 C = 8085.736941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.075 0.925 4 C -0.110 4.110 5 C -0.116 4.116 6 C -0.120 4.120 7 C -0.112 4.112 8 C -0.131 4.131 9 C 0.164 3.836 10 H 0.076 0.924 11 N -0.738 5.738 12 C 0.262 3.738 13 C -0.263 4.263 14 C -0.027 4.027 15 C -0.264 4.264 16 C 0.153 3.847 17 O -0.233 6.233 18 C -0.410 4.410 19 H 0.098 0.902 20 C -0.024 4.024 21 N -0.923 5.923 22 Si 1.018 2.982 23 H -0.263 1.263 24 H -0.270 1.270 25 H -0.254 1.254 26 C -0.318 4.318 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.397 0.603 41 H 0.138 0.862 42 H 0.150 0.850 43 H 0.105 0.895 44 H 0.272 0.728 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.480 1.246 22.694 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.094 0.906 4 C -0.148 4.148 5 C -0.153 4.153 6 C -0.157 4.157 7 C -0.150 4.150 8 C -0.170 4.170 9 C 0.059 3.941 10 H 0.094 0.906 11 N -0.367 5.367 12 C 0.157 3.843 13 C -0.286 4.286 14 C -0.045 4.045 15 C -0.285 4.285 16 C 0.102 3.898 17 O -0.140 6.140 18 C -0.487 4.487 19 H 0.116 0.884 20 C -0.221 4.221 21 N -0.561 5.561 22 Si 0.837 3.163 23 H -0.188 1.188 24 H -0.195 1.195 25 H -0.178 1.178 26 C -0.342 4.342 27 H 0.065 0.935 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.232 0.768 41 H 0.155 0.845 42 H 0.167 0.833 43 H 0.123 0.877 44 H 0.081 0.919 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.454 1.060 22.446 25.222 hybrid contribution -0.913 0.886 -0.774 1.489 sum 10.541 1.946 21.672 24.178 Atomic orbital electron populations 1.21893 0.95333 1.01639 1.01659 1.20249 0.95846 1.00394 0.94047 0.90645 1.20493 0.96352 1.01163 0.96781 1.21340 0.94538 0.99390 1.00032 1.21356 1.01284 0.98479 0.94584 1.21829 0.98063 0.98646 0.96459 1.21858 0.94622 1.00153 1.00347 1.20707 0.89108 0.99535 0.84750 0.90581 1.44924 1.52358 1.23606 1.15841 1.17511 0.90845 0.90069 0.85849 1.20532 1.09736 0.96637 1.01651 1.20806 0.94198 0.98599 0.90928 1.20235 1.07774 0.97626 1.02818 1.19625 0.89927 0.93390 0.86837 1.83946 1.51038 1.43511 1.35460 1.21784 1.18529 1.01034 1.07317 0.88426 1.26579 0.98265 1.02989 0.94270 1.70195 1.36695 1.40281 1.08949 0.84602 0.76858 0.75390 0.79422 1.18802 1.19494 1.17779 1.20500 1.12178 1.04487 0.97030 0.93527 0.91422 0.93531 0.90790 0.92164 0.91588 0.90702 0.91276 0.92429 0.92582 0.91568 0.93563 0.91437 0.76770 0.84461 0.83260 0.87696 0.91909 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.61 71.98 0.62 -2.13 16 2 C -0.09 -1.44 2.03 -12.65 -0.03 -1.46 16 3 H 0.08 1.20 7.47 -2.39 -0.02 1.18 16 4 C -0.11 -1.46 4.45 28.73 0.13 -1.34 16 5 C -0.12 -1.36 5.61 30.20 0.17 -1.19 16 6 C -0.12 -1.56 5.31 30.12 0.16 -1.40 16 7 C -0.11 -1.79 5.85 31.29 0.18 -1.60 16 8 C -0.13 -2.59 4.91 30.14 0.15 -2.44 16 9 C 0.16 3.46 1.49 44.59 0.07 3.52 16 10 H 0.08 1.70 5.36 -2.39 -0.01 1.69 16 11 N -0.74 -20.72 4.40 -320.90 -1.41 -22.13 16 12 C 0.26 9.57 6.51 38.20 0.25 9.82 16 13 C -0.26 -8.81 9.16 22.43 0.21 -8.60 16 14 C -0.03 -0.95 10.03 22.23 0.22 -0.73 16 15 C -0.26 -12.01 9.99 22.42 0.22 -11.79 16 16 C 0.15 8.08 6.65 22.56 0.15 8.23 16 17 O -0.23 -14.67 9.76 -22.75 -0.22 -14.89 16 18 C -0.41 -24.78 9.49 67.92 0.64 -24.14 16 19 H 0.10 5.46 5.20 -2.91 -0.02 5.44 16 20 C -0.02 -1.41 5.49 84.83 0.47 -0.94 16 21 N -0.92 -58.15 13.67 21.61 0.30 -57.85 16 22 Si 1.02 44.02 29.55 68.60 2.03 46.04 16 23 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 26 C -0.32 -14.64 9.01 22.52 0.20 -14.43 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.04 8.11 -2.39 -0.02 1.02 16 29 H 0.05 0.98 6.35 -2.39 -0.02 0.96 16 30 H 0.07 0.84 8.08 -2.39 -0.02 0.82 16 31 H 0.06 0.86 7.47 -2.39 -0.02 0.84 16 32 H 0.07 0.80 6.98 -2.39 -0.02 0.78 16 33 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.06 0.82 6.63 -2.39 -0.02 0.80 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 1.16 7.83 -2.39 -0.02 1.14 16 39 H 0.07 1.21 6.63 -2.38 -0.02 1.19 16 40 H 0.40 10.76 7.08 -92.70 -0.66 10.10 16 41 H 0.14 3.74 6.20 -2.91 -0.02 3.72 16 42 H 0.15 4.09 8.06 -2.91 -0.02 4.07 16 43 H 0.10 4.78 8.06 -2.91 -0.02 4.76 16 44 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 45 H 0.11 5.26 5.63 -2.91 -0.02 5.25 16 Total: -1.00 -71.43 343.44 4.83 -66.60 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: 0.33 Total: 32.85 kcal Atomic # 6 Polarization: -54.43 SS G_CDS: 3.81 Total: -50.62 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -1.12 Total: -79.99 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.22 Total: -14.89 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -71.43 4.83 -66.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691073251.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.801 kcal (2) G-P(sol) polarization free energy of solvation -71.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds