Wall clock time and date at job start Tue Mar 31 2020 05:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46811 * 2 1 4 4 H 1.09001 * 109.47263 * 54.99760 * 3 2 1 5 5 C 1.50703 * 109.46826 * 174.99919 * 3 2 1 6 6 H 1.08001 * 119.99925 * 120.00645 * 5 3 2 7 7 C 1.37870 * 120.00092 * 299.99350 * 5 3 2 8 8 N 1.31515 * 120.00280 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99954 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46815 * 90.01038 * 9 7 5 11 11 H 1.48498 * 109.47193 * 210.00456 * 9 7 5 12 12 H 1.48496 * 109.47192 * 330.00878 * 9 7 5 13 13 N 1.46901 * 109.47399 * 294.99989 * 3 2 1 14 14 C 1.46897 * 110.99982 * 84.99645 * 13 3 2 15 15 C 1.53782 * 113.61657 * 205.00137 * 14 13 3 16 16 C 1.53781 * 87.08260 * 220.02235 * 15 14 13 17 17 O 1.42905 * 113.61505 * 270.80084 * 16 15 14 18 18 C 1.42891 * 113.99873 * 208.47211 * 17 16 15 19 19 C 1.50696 * 109.47395 * 180.02562 * 18 17 16 20 20 C 1.38240 * 119.99802 * 269.72953 * 19 18 17 21 21 C 1.38235 * 120.00045 * 179.76335 * 20 19 18 22 22 C 1.38243 * 119.99954 * 0.50184 * 21 20 19 23 23 C 1.38236 * 119.99378 * 359.74927 * 22 21 20 24 24 C 1.38226 * 120.00585 * 359.97438 * 23 22 21 25 25 C 1.53786 * 87.17350 * 25.39213 * 16 15 14 26 26 H 1.09003 * 109.46727 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47274 * 299.99789 * 1 2 3 28 28 H 1.09001 * 109.47137 * 60.00219 * 1 2 3 29 29 H 1.08999 * 109.47274 * 240.00211 * 2 1 3 30 30 H 1.09001 * 109.47137 * 119.99781 * 2 1 3 31 31 H 0.96998 * 120.00690 * 179.97438 * 8 7 5 32 32 H 1.00896 * 111.00428 * 208.95592 * 13 3 2 33 33 H 1.09002 * 112.84982 * 336.20191 * 14 13 3 34 34 H 1.09001 * 113.61250 * 105.47053 * 15 14 13 35 35 H 1.08996 * 113.68722 * 334.58367 * 15 14 13 36 36 H 1.09002 * 113.61445 * 139.98212 * 16 15 14 37 37 H 1.08999 * 109.47438 * 299.99783 * 18 17 16 38 38 H 1.09002 * 109.47642 * 59.99603 * 18 17 16 39 39 H 1.08001 * 120.00174 * 359.97438 * 20 19 18 40 40 H 1.08001 * 120.00304 * 180.22999 * 21 20 19 41 41 H 1.08000 * 120.00210 * 179.72728 * 22 21 20 42 42 H 1.08006 * 119.99739 * 179.97438 * 23 22 21 43 43 H 1.08007 * 120.00249 * 179.97438 * 24 23 22 44 44 H 1.08993 * 113.61491 * 89.15923 * 25 16 15 45 45 H 1.09000 * 113.61138 * 220.06261 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8786 1.2280 8 7 3.4062 0.3369 2.1730 9 14 6.0049 0.8802 1.3811 10 1 6.4427 2.1132 2.0838 11 1 6.4390 -0.3108 2.1546 12 1 6.6130 0.8397 0.0270 13 7 1.6513 2.0994 -1.2552 14 6 0.2912 2.6467 -1.1638 15 6 -0.4081 2.7900 -2.5259 16 6 -0.9652 4.1276 -2.0108 17 8 -2.2148 4.0027 -1.3289 18 6 -3.0398 5.1666 -1.4096 19 6 -4.3243 4.9249 -0.6597 20 6 -5.4185 4.3933 -1.3163 21 6 -6.5953 4.1670 -0.6273 22 6 -6.6813 4.4820 0.7160 23 6 -5.5887 5.0184 1.3713 24 6 -4.4102 5.2394 0.6837 25 6 0.2484 4.1827 -1.0678 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0615 2.9496 32 1 2.3137 2.8172 -1.5079 33 1 -0.3173 2.1451 -0.4113 34 1 -1.1757 2.0369 -2.7041 35 1 0.2816 2.8976 -3.3630 36 1 -0.9702 4.9170 -2.7625 37 1 -2.5160 6.0146 -0.9684 38 1 -3.2636 5.3817 -2.4545 39 1 -5.3529 4.1515 -2.3669 40 1 -7.4490 3.7482 -1.1394 41 1 -7.6021 4.3093 1.2533 42 1 -5.6560 5.2649 2.4207 43 1 -3.5567 5.6589 1.1956 44 1 1.1189 4.6719 -1.5046 45 1 0.0099 4.5523 -0.0705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716220141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:18 Heat of formation + Delta-G solvation = 0.656638 kcal Electronic energy + Delta-G solvation = -22691.312104 eV Core-core repulsion = 19481.329190 eV Total energy + Delta-G solvation = -3209.982914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.69741 -39.02722 -36.58783 -34.66490 -32.08082 -31.56603 -31.05852 -29.94196 -26.70266 -26.02599 -25.27183 -23.35931 -22.73742 -22.06976 -21.45762 -19.60003 -19.13622 -17.16008 -16.60471 -16.19072 -15.73378 -15.60638 -15.03505 -14.76891 -14.34947 -14.07255 -13.79259 -13.55369 -13.29494 -12.77657 -12.70379 -12.48823 -12.26241 -12.06705 -11.89433 -11.61443 -11.35090 -11.18520 -11.15304 -11.00206 -10.84816 -10.60681 -10.45285 -10.13117 -9.92411 -9.56203 -9.37997 -9.10161 -9.06900 -8.97420 -8.73973 -8.40300 -7.14453 -5.98628 -4.05390 1.10843 1.25036 3.30735 3.37644 3.41335 3.41377 3.97907 4.42651 4.64167 4.66812 4.84147 4.90374 4.94600 5.09633 5.13327 5.14994 5.25221 5.31179 5.39580 5.40968 5.50038 5.69682 5.80386 5.85326 5.87992 6.08349 6.18380 6.27964 6.33685 6.37308 6.40350 6.44890 6.49673 6.56737 6.68139 6.69689 6.82113 7.13421 7.22072 7.35571 7.46191 7.67165 7.82029 7.96813 8.36333 8.49180 8.73913 9.06648 9.60203 11.06798 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.003082 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.964705 B = 9081.946960 C = 9412.452638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.518 4.518 6 H 0.058 0.942 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.678 5.678 14 C 0.074 3.926 15 C -0.130 4.130 16 C 0.061 3.939 17 O -0.357 6.357 18 C 0.102 3.898 19 C -0.087 4.087 20 C -0.099 4.099 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.097 4.097 25 C -0.189 4.189 26 H 0.028 0.972 27 H 0.037 0.963 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.089 0.911 31 H 0.260 0.740 32 H 0.331 0.669 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.085 0.915 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.368 10.402 -6.024 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.557 4.557 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.723 3.277 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.307 5.307 14 C -0.038 4.038 15 C -0.169 4.169 16 C 0.003 3.997 17 O -0.276 6.276 18 C 0.026 3.974 19 C -0.088 4.088 20 C -0.117 4.117 21 C -0.143 4.143 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.116 4.116 25 C -0.229 4.229 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.070 0.930 32 H 0.149 0.851 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.104 0.896 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.576 9.526 -6.037 20.883 hybrid contribution 1.199 0.959 0.682 1.680 sum -16.377 10.485 -5.355 20.170 Atomic orbital electron populations 1.22056 0.99791 0.98987 1.00121 1.21533 0.91364 0.99688 1.01940 1.19090 0.94327 0.91009 0.84505 0.98084 1.21295 0.91416 1.37922 1.05062 0.92339 1.24919 0.98150 0.95226 0.95697 1.69894 1.34806 1.38509 1.09473 0.86559 0.85690 0.77420 0.78079 1.20842 1.21233 1.19895 1.60593 1.00780 1.32593 1.36729 1.23227 0.93178 0.91054 0.96301 1.23362 0.99053 0.95247 0.99205 1.23029 0.83416 0.98933 0.94314 1.87997 1.28424 1.36142 1.75025 1.21328 0.88797 0.88916 0.98386 1.19653 0.94424 1.00280 0.94400 1.21073 0.92763 0.97764 1.00133 1.21141 0.97891 1.00554 0.94738 1.21192 0.98666 0.98839 0.94825 1.21163 0.93258 0.99782 0.99975 1.21115 0.97822 0.99038 0.93581 1.24262 0.97634 1.00865 1.00112 0.95303 0.94431 0.92951 0.94411 0.89258 0.92969 0.85132 0.87670 0.91251 0.89048 0.91491 0.92571 0.92608 0.85957 0.85992 0.86102 0.85912 0.85850 0.89646 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.48 37.16 0.32 -2.96 16 2 C -0.11 -2.66 5.45 -26.73 -0.15 -2.81 16 3 C 0.22 5.54 2.20 -68.86 -0.15 5.39 16 4 H 0.00 0.04 7.84 -51.93 -0.41 -0.37 16 5 C -0.52 -14.26 8.59 -34.44 -0.30 -14.55 16 6 H 0.06 1.58 7.62 -52.49 -0.40 1.18 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.54 11.29 55.43 0.63 -24.91 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 13 N -0.68 -14.46 6.37 -100.00 -0.64 -15.10 16 14 C 0.07 1.36 2.46 -66.81 -0.16 1.20 16 15 C -0.13 -2.00 7.69 -25.92 -0.20 -2.20 16 16 C 0.06 0.86 4.36 -25.92 -0.11 0.74 16 17 O -0.36 -5.26 10.26 -35.23 -0.36 -5.62 16 18 C 0.10 1.17 5.91 36.00 0.21 1.39 16 19 C -0.09 -1.02 5.51 -104.62 -0.58 -1.60 16 20 C -0.10 -1.05 9.70 -39.58 -0.38 -1.43 16 21 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 22 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 23 C -0.12 -1.24 10.05 -39.59 -0.40 -1.63 16 24 C -0.10 -1.09 9.70 -39.59 -0.38 -1.48 16 25 C -0.19 -2.99 7.54 -25.82 -0.19 -3.19 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.04 0.81 7.90 -51.93 -0.41 0.40 16 28 H 0.05 1.07 5.59 -51.93 -0.29 0.78 16 29 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.09 2.47 5.95 -51.93 -0.31 2.16 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.33 6.85 7.69 -39.29 -0.30 6.55 16 33 H 0.11 2.16 5.12 -51.93 -0.27 1.89 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.07 0.78 7.88 -51.93 -0.41 0.37 16 37 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 38 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 43 H 0.12 1.28 8.06 -52.48 -0.42 0.85 16 44 H 0.09 1.26 7.83 -51.93 -0.41 0.86 16 45 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -29.71 360.72 -10.73 -40.44 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -7.40 Total: 8.00 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -3.37 Total: -24.59 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.01 Total: -40.01 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -0.36 Total: -5.62 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.71 -10.73 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716220141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.093 kcal (2) G-P(sol) polarization free energy of solvation -29.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds