Wall clock time and date at job start Tue Mar 31 2020 05:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46811 * 2 1 4 4 H 1.09001 * 109.47263 * 54.99760 * 3 2 1 5 5 C 1.50703 * 109.46826 * 174.99919 * 3 2 1 6 6 H 1.08001 * 119.99925 * 120.00645 * 5 3 2 7 7 C 1.37870 * 120.00092 * 299.99350 * 5 3 2 8 8 N 1.31515 * 120.00280 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99954 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46815 * 90.01038 * 9 7 5 11 11 H 1.48498 * 109.47193 * 210.00456 * 9 7 5 12 12 H 1.48496 * 109.47192 * 330.00878 * 9 7 5 13 13 N 1.46901 * 109.47399 * 294.99989 * 3 2 1 14 14 C 1.46897 * 110.99982 * 84.99645 * 13 3 2 15 15 C 1.53782 * 113.61657 * 205.00137 * 14 13 3 16 16 C 1.53781 * 87.08260 * 220.02235 * 15 14 13 17 17 O 1.42905 * 113.61505 * 270.80084 * 16 15 14 18 18 C 1.42891 * 113.99873 * 208.47211 * 17 16 15 19 19 C 1.50696 * 109.47395 * 180.02562 * 18 17 16 20 20 C 1.38240 * 119.99802 * 269.72953 * 19 18 17 21 21 C 1.38235 * 120.00045 * 179.76335 * 20 19 18 22 22 C 1.38243 * 119.99954 * 0.50184 * 21 20 19 23 23 C 1.38236 * 119.99378 * 359.74927 * 22 21 20 24 24 C 1.38226 * 120.00585 * 359.97438 * 23 22 21 25 25 C 1.53786 * 87.17350 * 25.39213 * 16 15 14 26 26 H 1.09003 * 109.46727 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47274 * 299.99789 * 1 2 3 28 28 H 1.09001 * 109.47137 * 60.00219 * 1 2 3 29 29 H 1.08999 * 109.47274 * 240.00211 * 2 1 3 30 30 H 1.09001 * 109.47137 * 119.99781 * 2 1 3 31 31 H 0.96998 * 120.00690 * 179.97438 * 8 7 5 32 32 H 1.00896 * 111.00428 * 208.95592 * 13 3 2 33 33 H 1.09002 * 112.84982 * 336.20191 * 14 13 3 34 34 H 1.09001 * 113.61250 * 105.47053 * 15 14 13 35 35 H 1.08996 * 113.68722 * 334.58367 * 15 14 13 36 36 H 1.09002 * 113.61445 * 139.98212 * 16 15 14 37 37 H 1.08999 * 109.47438 * 299.99783 * 18 17 16 38 38 H 1.09002 * 109.47642 * 59.99603 * 18 17 16 39 39 H 1.08001 * 120.00174 * 359.97438 * 20 19 18 40 40 H 1.08001 * 120.00304 * 180.22999 * 21 20 19 41 41 H 1.08000 * 120.00210 * 179.72728 * 22 21 20 42 42 H 1.08006 * 119.99739 * 179.97438 * 23 22 21 43 43 H 1.08007 * 120.00249 * 179.97438 * 24 23 22 44 44 H 1.08993 * 113.61491 * 89.15923 * 25 16 15 45 45 H 1.09000 * 113.61138 * 220.06261 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5418 1.4444 0.1239 6 1 4.1471 1.8890 -0.6522 7 6 4.1432 0.8786 1.2280 8 7 3.4062 0.3369 2.1730 9 14 6.0049 0.8802 1.3811 10 1 6.4427 2.1132 2.0838 11 1 6.4390 -0.3108 2.1546 12 1 6.6130 0.8397 0.0270 13 7 1.6513 2.0994 -1.2552 14 6 0.2912 2.6467 -1.1638 15 6 -0.4081 2.7900 -2.5259 16 6 -0.9652 4.1276 -2.0108 17 8 -2.2148 4.0027 -1.3289 18 6 -3.0398 5.1666 -1.4096 19 6 -4.3243 4.9249 -0.6597 20 6 -5.4185 4.3933 -1.3163 21 6 -6.5953 4.1670 -0.6273 22 6 -6.6813 4.4820 0.7160 23 6 -5.5887 5.0184 1.3713 24 6 -4.4102 5.2394 0.6837 25 6 0.2484 4.1827 -1.0678 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8292 -0.0615 2.9496 32 1 2.3137 2.8172 -1.5079 33 1 -0.3173 2.1451 -0.4113 34 1 -1.1757 2.0369 -2.7041 35 1 0.2816 2.8976 -3.3630 36 1 -0.9702 4.9170 -2.7625 37 1 -2.5160 6.0146 -0.9684 38 1 -3.2636 5.3817 -2.4545 39 1 -5.3529 4.1515 -2.3669 40 1 -7.4490 3.7482 -1.1394 41 1 -7.6021 4.3093 1.2533 42 1 -5.6560 5.2649 2.4207 43 1 -3.5567 5.6589 1.1956 44 1 1.1189 4.6719 -1.5046 45 1 0.0099 4.5523 -0.0705 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716220141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:17 Heat of formation + Delta-G solvation = -15.926142 kcal Electronic energy + Delta-G solvation = -22692.031187 eV Core-core repulsion = 19481.329190 eV Total energy + Delta-G solvation = -3210.701997 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.77253 -40.00111 -37.99631 -36.25748 -33.89241 -32.66380 -31.80141 -31.67024 -28.56143 -26.97148 -26.52771 -25.14612 -23.64154 -23.48561 -22.24810 -21.45877 -20.59064 -18.51327 -17.93986 -17.38007 -16.94986 -16.63686 -16.53848 -16.02417 -15.88724 -15.20905 -15.08699 -14.69639 -14.30545 -14.29038 -14.18986 -13.70085 -13.67138 -13.29121 -13.22881 -13.18726 -13.00180 -12.81518 -12.69095 -12.38914 -12.05489 -11.96745 -11.84820 -11.75024 -11.53855 -11.50192 -10.82249 -10.75504 -10.50296 -10.39140 -9.83480 -9.76696 -8.89977 -8.10620 -6.25431 0.32924 0.48770 1.41315 1.42706 1.53333 2.42046 2.54571 3.09453 3.16397 3.62265 3.71929 3.76087 3.93450 4.00708 4.12289 4.14293 4.27169 4.33502 4.35120 4.38681 4.52212 4.58110 4.64546 4.65995 4.76206 4.80377 4.85844 4.90689 5.06880 5.09784 5.14348 5.17600 5.22749 5.25409 5.34626 5.50964 5.53950 5.59602 5.65447 5.66301 5.74532 5.91043 6.08889 6.30464 6.34519 6.57280 6.84521 7.07551 7.45002 8.94020 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.003082 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.964705 B = 9081.946960 C = 9412.452638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C 0.226 3.774 4 H -0.038 1.038 5 C -0.538 4.538 6 H 0.060 0.940 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 0.962 3.038 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.674 5.674 14 C 0.056 3.944 15 C -0.119 4.119 16 C 0.078 3.922 17 O -0.381 6.381 18 C 0.100 3.900 19 C -0.109 4.109 20 C -0.111 4.111 21 C -0.130 4.130 22 C -0.121 4.121 23 C -0.134 4.134 24 C -0.119 4.119 25 C -0.186 4.186 26 H 0.047 0.953 27 H 0.027 0.973 28 H 0.064 0.936 29 H 0.030 0.970 30 H 0.059 0.941 31 H 0.261 0.739 32 H 0.333 0.667 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.135 0.865 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.139 0.861 43 H 0.121 0.879 44 H 0.099 0.901 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.141 11.170 -7.486 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.140 4.140 3 C 0.118 3.882 4 H -0.020 1.020 5 C -0.576 4.576 6 H 0.078 0.922 7 C -0.187 4.187 8 N -0.556 5.556 9 Si 0.787 3.213 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.303 5.303 14 C -0.055 4.055 15 C -0.157 4.157 16 C 0.019 3.981 17 O -0.301 6.301 18 C 0.024 3.976 19 C -0.109 4.109 20 C -0.129 4.129 21 C -0.148 4.148 22 C -0.139 4.139 23 C -0.152 4.152 24 C -0.137 4.137 25 C -0.225 4.225 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.083 0.917 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.152 0.848 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.125 0.875 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.163 0.837 42 H 0.156 0.844 43 H 0.139 0.861 44 H 0.117 0.883 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.369 10.312 -7.514 22.365 hybrid contribution 1.355 0.733 1.175 1.938 sum -17.014 11.045 -6.339 21.252 Atomic orbital electron populations 1.21900 0.97204 1.00210 1.00250 1.21373 0.93666 0.98993 0.99999 1.18832 0.93309 0.91159 0.84923 1.02047 1.21653 0.92672 1.38005 1.05295 0.92227 1.25749 1.02812 0.94814 0.95368 1.70039 1.36640 1.39068 1.09902 0.85504 0.80051 0.77491 0.78242 1.20186 1.20973 1.19141 1.60568 1.02279 1.33197 1.34264 1.23302 0.91311 0.92715 0.98127 1.23289 0.98772 0.96170 0.97485 1.22897 0.82462 0.98862 0.93854 1.87971 1.28806 1.37944 1.75397 1.21499 0.88398 0.87961 0.99757 1.19830 0.94972 1.01317 0.94747 1.21329 0.92907 0.97691 1.00943 1.21498 0.98323 0.99981 0.94995 1.21554 0.99339 0.97954 0.95075 1.21449 0.93156 0.99702 1.00904 1.21295 0.98506 0.99911 0.93966 1.24228 0.99555 0.98486 1.00242 0.93437 0.95373 0.91745 0.95070 0.92229 0.92970 0.84848 0.90209 0.91406 0.87533 0.88043 0.92009 0.90491 0.84711 0.83632 0.83683 0.84364 0.86051 0.88313 0.93048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.02 8.48 71.98 0.61 -5.41 16 2 C -0.10 -5.20 5.45 30.59 0.17 -5.03 16 3 C 0.23 11.84 2.20 44.17 0.10 11.93 16 4 H -0.04 -2.25 7.84 -2.39 -0.02 -2.27 16 5 C -0.54 -30.09 8.59 25.60 0.22 -29.87 16 6 H 0.06 3.24 7.62 -2.91 -0.02 3.22 16 7 C 0.01 0.65 5.29 84.65 0.45 1.10 16 8 N -0.92 -54.09 11.29 21.44 0.24 -53.85 16 9 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 N -0.67 -28.92 6.37 -470.29 -3.00 -31.92 16 14 C 0.06 2.07 2.46 45.50 0.11 2.18 16 15 C -0.12 -3.43 7.69 31.12 0.24 -3.19 16 16 C 0.08 2.00 4.36 31.12 0.14 2.13 16 17 O -0.38 -10.79 10.26 -148.98 -1.53 -12.32 16 18 C 0.10 2.15 5.91 71.23 0.42 2.57 16 19 C -0.11 -2.45 5.51 -19.87 -0.11 -2.56 16 20 C -0.11 -2.18 9.70 22.27 0.22 -1.97 16 21 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 22 C -0.12 -2.05 10.05 22.27 0.22 -1.83 16 23 C -0.13 -2.58 10.05 22.27 0.22 -2.35 16 24 C -0.12 -2.66 9.70 22.27 0.22 -2.44 16 25 C -0.19 -5.74 7.54 31.18 0.24 -5.51 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.03 1.24 7.90 -2.39 -0.02 1.22 16 28 H 0.06 2.63 5.59 -2.39 -0.01 2.61 16 29 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 3.41 5.95 -2.39 -0.01 3.39 16 31 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.33 13.77 7.69 -89.70 -0.69 13.08 16 33 H 0.08 3.36 5.12 -2.39 -0.01 3.34 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.10 1.97 7.88 -2.39 -0.02 1.95 16 37 H 0.06 1.23 8.08 -2.39 -0.02 1.21 16 38 H 0.08 1.30 8.08 -2.39 -0.02 1.29 16 39 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 41 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 42 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 44 H 0.10 2.78 7.83 -2.39 -0.02 2.76 16 45 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -65.19 360.72 1.69 -63.50 By element: Atomic # 1 Polarization: 30.43 SS G_CDS: 0.27 Total: 30.70 kcal Atomic # 6 Polarization: -45.92 SS G_CDS: 3.68 Total: -42.24 kcal Atomic # 7 Polarization: -83.02 SS G_CDS: -2.76 Total: -85.77 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -1.53 Total: -12.32 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -65.19 1.69 -63.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716220141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.571 kcal (2) G-P(sol) polarization free energy of solvation -65.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds