Wall clock time and date at job start Tue Mar 31 2020 05:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47153 * 2 1 4 4 H 1.09000 * 109.47167 * 302.81987 * 3 2 1 5 5 C 1.50695 * 109.47229 * 182.82017 * 3 2 1 6 6 H 1.08003 * 119.99833 * 244.78003 * 5 3 2 7 7 C 1.37880 * 120.00275 * 64.78409 * 5 3 2 8 8 N 1.31509 * 120.00194 * 192.86467 * 7 5 3 9 9 Si 1.86797 * 119.99506 * 12.86552 * 7 5 3 10 10 H 1.48505 * 109.47364 * 85.32391 * 9 7 5 11 11 H 1.48505 * 109.46845 * 205.32031 * 9 7 5 12 12 H 1.48498 * 109.47532 * 325.31730 * 9 7 5 13 13 N 1.46899 * 109.46970 * 62.82029 * 3 2 1 14 14 C 1.46903 * 110.99880 * 261.72516 * 13 3 2 15 15 C 1.53777 * 113.61735 * 227.42269 * 14 13 3 16 16 C 1.53776 * 87.08253 * 220.02064 * 15 14 13 17 17 O 1.42906 * 113.61661 * 139.98018 * 16 15 14 18 18 C 1.42900 * 114.00167 * 151.52781 * 17 16 15 19 19 C 1.50697 * 109.47060 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99969 * 90.00440 * 19 18 17 21 21 C 1.38230 * 120.00345 * 179.97438 * 20 19 18 22 22 C 1.38234 * 119.99690 * 359.97151 * 21 20 19 23 23 C 1.38234 * 120.00494 * 0.28499 * 22 21 20 24 24 C 1.38233 * 119.99450 * 359.50251 * 23 22 21 25 25 C 1.53779 * 87.17372 * 25.39221 * 16 15 14 26 26 H 1.08998 * 109.47116 * 301.67086 * 1 2 3 27 27 H 1.08994 * 109.47228 * 61.67535 * 1 2 3 28 28 H 1.08998 * 109.46615 * 181.67027 * 1 2 3 29 29 H 1.09001 * 109.47537 * 239.99806 * 2 1 3 30 30 H 1.09004 * 109.47303 * 120.00024 * 2 1 3 31 31 H 0.97004 * 120.00367 * 179.97438 * 8 7 5 32 32 H 1.00899 * 111.00131 * 137.77811 * 13 3 2 33 33 H 1.09000 * 112.85100 * 358.61955 * 14 13 3 34 34 H 1.08999 * 113.61479 * 105.47281 * 15 14 13 35 35 H 1.09006 * 113.61214 * 334.56770 * 15 14 13 36 36 H 1.08997 * 113.61573 * 270.79830 * 16 15 14 37 37 H 1.09000 * 109.46887 * 60.00223 * 18 17 16 38 38 H 1.08990 * 109.47316 * 300.00312 * 18 17 16 39 39 H 1.08003 * 119.99639 * 359.97438 * 20 19 18 40 40 H 1.07995 * 120.00180 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.99928 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00502 * 179.72536 * 23 22 21 43 43 H 1.08004 * 120.00304 * 180.27864 * 24 23 22 44 44 H 1.08995 * 113.61973 * 89.15761 * 25 16 15 45 45 H 1.09000 * 113.61386 * 220.06295 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6360 1.9707 -0.8636 5 6 3.5453 1.4431 -0.0699 6 1 4.1241 1.8279 0.7567 7 6 4.1837 0.9524 -1.1892 8 7 5.4770 0.7159 -1.1579 9 14 3.2115 0.6237 -2.7500 10 1 3.1075 1.8760 -3.5414 11 1 3.9040 -0.4145 -3.5550 12 1 1.8504 0.1482 -2.3945 13 7 1.6067 2.1150 1.2321 14 6 0.4036 2.9239 0.9951 15 6 0.4928 4.3453 1.5749 16 6 -0.9774 4.1816 1.9950 17 8 -1.2686 4.7261 3.2838 18 6 -2.6181 5.1709 3.4354 19 6 -2.8122 5.7222 4.8244 20 6 -2.5863 7.0631 5.0736 21 6 -2.7648 7.5690 6.3476 22 6 -3.1698 6.7342 7.3722 23 6 -3.3906 5.3923 7.1243 24 6 -3.2163 4.8873 5.8494 25 6 -0.7250 2.6648 2.0098 26 1 -0.3633 0.5396 0.8746 27 1 -0.3633 0.4876 -0.9046 28 1 -0.3632 -1.0272 0.0300 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.9261 0.3704 -1.9452 32 1 2.3504 2.6775 1.6177 33 1 0.0723 2.8958 -0.0430 34 1 0.6480 5.1160 0.8199 35 1 1.1803 4.4312 2.4165 36 1 -1.6876 4.4987 1.2313 37 1 -3.2968 4.3322 3.2797 38 1 -2.8286 5.9495 2.7024 39 1 -2.2703 7.7153 4.2729 40 1 -2.5887 8.6166 6.5421 41 1 -3.3096 7.1296 8.3675 42 1 -3.7027 4.7393 7.9258 43 1 -3.3932 3.8398 5.6546 44 1 -0.3710 2.2904 2.9703 45 1 -1.5515 2.0806 1.6052 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716220142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:20 Heat of formation + Delta-G solvation = 1.073883 kcal Electronic energy + Delta-G solvation = -22402.210966 eV Core-core repulsion = 19192.246145 eV Total energy + Delta-G solvation = -3209.964821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.71531 -39.07123 -36.77917 -34.92356 -32.15220 -31.81435 -31.12296 -30.37493 -27.09528 -26.15419 -25.39331 -23.00310 -22.80061 -22.17997 -21.54399 -19.78219 -19.32988 -17.25721 -16.93777 -16.51327 -15.81453 -15.67962 -15.38021 -14.82541 -14.36096 -14.29155 -13.73015 -13.62736 -13.42732 -12.97239 -12.87162 -12.71067 -12.45799 -12.10048 -12.04220 -11.88558 -11.62571 -11.32497 -11.24890 -11.10466 -10.89690 -10.73054 -10.43512 -10.35645 -10.21288 -9.75377 -9.32256 -9.23154 -9.13678 -9.04779 -9.03835 -8.45809 -7.43749 -6.12359 -4.09016 1.05009 1.18451 3.26700 3.36045 3.38081 3.39027 3.97961 4.39828 4.58031 4.63005 4.78010 4.80472 4.87907 4.93125 5.04777 5.07047 5.16419 5.18675 5.21376 5.33268 5.39475 5.43863 5.70569 5.74508 5.81661 5.98332 6.06679 6.09599 6.13272 6.21637 6.25468 6.27225 6.31073 6.38816 6.43950 6.50490 6.69370 6.75763 6.81568 7.05836 7.11496 7.31628 7.47276 7.66613 8.01944 8.37896 8.62551 8.95673 9.52841 11.00662 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033774 B = 0.002720 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.842420 B =10293.333368 C =10504.806964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C 0.191 3.809 4 H 0.002 0.998 5 C -0.531 4.531 6 H 0.076 0.924 7 C 0.077 3.923 8 N -0.893 5.893 9 Si 0.861 3.139 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.245 1.245 13 N -0.664 5.664 14 C 0.071 3.929 15 C -0.151 4.151 16 C 0.058 3.942 17 O -0.365 6.365 18 C 0.101 3.899 19 C -0.087 4.087 20 C -0.100 4.100 21 C -0.125 4.125 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.098 4.098 25 C -0.143 4.143 26 H 0.062 0.938 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.264 0.736 32 H 0.343 0.657 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.094 0.906 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.806 10.847 11.103 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C 0.082 3.918 4 H 0.020 0.980 5 C -0.569 4.569 6 H 0.094 0.906 7 C -0.126 4.126 8 N -0.530 5.530 9 Si 0.688 3.312 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.170 1.170 13 N -0.295 5.295 14 C -0.040 4.040 15 C -0.189 4.189 16 C 0.000 4.000 17 O -0.285 6.285 18 C 0.024 3.976 19 C -0.087 4.087 20 C -0.118 4.118 21 C -0.143 4.143 22 C -0.136 4.136 23 C -0.142 4.142 24 C -0.116 4.116 25 C -0.181 4.181 26 H 0.081 0.919 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.163 0.837 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.112 0.888 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.830 10.231 11.365 25.042 hybrid contribution -0.130 0.510 -1.637 1.720 sum -19.960 10.741 9.728 24.667 Atomic orbital electron populations 1.21913 0.98674 0.99566 1.00795 1.21960 0.92827 0.99442 1.01085 1.19536 0.95158 0.90832 0.86316 0.98036 1.21241 0.89206 1.42515 1.03941 0.90609 1.24908 0.94707 0.94277 0.98743 1.69958 1.09460 1.44000 1.29598 0.87317 0.81973 0.78206 0.83680 1.20706 1.21486 1.16952 1.60513 1.06652 1.32044 1.30285 1.22836 0.93475 0.90759 0.96965 1.23758 0.95650 0.98583 1.00925 1.23662 0.96863 0.94875 0.84565 1.88054 1.26761 1.80588 1.33057 1.21316 0.85340 0.97810 0.93128 1.19681 1.00158 0.93841 0.95034 1.21087 0.98584 0.94952 0.97170 1.21146 1.00186 0.99906 0.93049 1.21190 0.99376 0.93932 0.99092 1.21159 1.00642 0.95612 0.96808 1.21107 0.98423 0.99569 0.92550 1.23728 0.98506 0.94487 1.01416 0.91903 0.94744 0.94838 0.92776 0.92335 0.92646 0.83654 0.90353 0.91499 0.88796 0.90064 0.92558 0.92709 0.85965 0.85987 0.86111 0.85938 0.85848 0.88797 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.37 37.16 0.35 -2.45 16 2 C -0.11 -2.54 4.97 -26.73 -0.13 -2.67 16 3 C 0.19 4.41 1.79 -68.87 -0.12 4.28 16 4 H 0.00 0.05 6.00 -51.93 -0.31 -0.26 16 5 C -0.53 -14.62 9.02 -34.44 -0.31 -14.93 16 6 H 0.08 2.26 7.72 -52.48 -0.41 1.86 16 7 C 0.08 2.18 5.37 -17.82 -0.10 2.08 16 8 N -0.89 -27.05 13.96 55.43 0.77 -26.27 16 9 Si 0.86 20.95 25.88 -169.99 -4.40 16.55 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.25 -5.60 5.21 56.52 0.29 -5.30 16 13 N -0.66 -13.28 6.20 -100.01 -0.62 -13.90 16 14 C 0.07 1.17 3.00 -66.81 -0.20 0.97 16 15 C -0.15 -2.19 7.42 -25.92 -0.19 -2.38 16 16 C 0.06 0.76 4.29 -25.92 -0.11 0.65 16 17 O -0.37 -4.96 10.34 -35.23 -0.36 -5.32 16 18 C 0.10 1.07 5.91 36.00 0.21 1.28 16 19 C -0.09 -0.93 5.51 -104.62 -0.58 -1.51 16 20 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 21 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 23 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 24 C -0.10 -0.99 9.70 -39.58 -0.38 -1.37 16 25 C -0.14 -2.05 6.54 -25.83 -0.17 -2.22 16 26 H 0.06 1.09 4.94 -51.93 -0.26 0.84 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 1.26 4.50 -51.93 -0.23 1.02 16 30 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.34 7.04 7.48 -39.29 -0.29 6.75 16 33 H 0.08 1.32 7.25 -51.93 -0.38 0.95 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 1.44 7.97 -51.93 -0.41 1.03 16 36 H 0.08 0.91 7.88 -51.93 -0.41 0.50 16 37 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 38 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16 39 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 43 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 44 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.06 0.82 7.55 -51.93 -0.39 0.43 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -30.35 355.30 -9.97 -40.32 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -7.40 Total: 7.31 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -3.31 Total: -24.03 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.15 Total: -40.17 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.36 Total: -5.32 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.40 Total: 16.55 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.35 -9.97 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716220142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.393 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds