Wall clock time and date at job start Tue Mar 31 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47153 * 2 1 4 4 H 1.09000 * 109.47167 * 302.81987 * 3 2 1 5 5 C 1.50695 * 109.47229 * 182.82017 * 3 2 1 6 6 H 1.08003 * 119.99833 * 244.78003 * 5 3 2 7 7 C 1.37880 * 120.00275 * 64.78409 * 5 3 2 8 8 N 1.31509 * 120.00194 * 192.86467 * 7 5 3 9 9 Si 1.86797 * 119.99506 * 12.86552 * 7 5 3 10 10 H 1.48505 * 109.47364 * 85.32391 * 9 7 5 11 11 H 1.48505 * 109.46845 * 205.32031 * 9 7 5 12 12 H 1.48498 * 109.47532 * 325.31730 * 9 7 5 13 13 N 1.46899 * 109.46970 * 62.82029 * 3 2 1 14 14 C 1.46903 * 110.99880 * 261.72516 * 13 3 2 15 15 C 1.53777 * 113.61735 * 227.42269 * 14 13 3 16 16 C 1.53776 * 87.08253 * 220.02064 * 15 14 13 17 17 O 1.42906 * 113.61661 * 139.98018 * 16 15 14 18 18 C 1.42900 * 114.00167 * 151.52781 * 17 16 15 19 19 C 1.50697 * 109.47060 * 179.97438 * 18 17 16 20 20 C 1.38238 * 119.99969 * 90.00440 * 19 18 17 21 21 C 1.38230 * 120.00345 * 179.97438 * 20 19 18 22 22 C 1.38234 * 119.99690 * 359.97151 * 21 20 19 23 23 C 1.38234 * 120.00494 * 0.28499 * 22 21 20 24 24 C 1.38233 * 119.99450 * 359.50251 * 23 22 21 25 25 C 1.53779 * 87.17372 * 25.39221 * 16 15 14 26 26 H 1.08998 * 109.47116 * 301.67086 * 1 2 3 27 27 H 1.08994 * 109.47228 * 61.67535 * 1 2 3 28 28 H 1.08998 * 109.46615 * 181.67027 * 1 2 3 29 29 H 1.09001 * 109.47537 * 239.99806 * 2 1 3 30 30 H 1.09004 * 109.47303 * 120.00024 * 2 1 3 31 31 H 0.97004 * 120.00367 * 179.97438 * 8 7 5 32 32 H 1.00899 * 111.00131 * 137.77811 * 13 3 2 33 33 H 1.09000 * 112.85100 * 358.61955 * 14 13 3 34 34 H 1.08999 * 113.61479 * 105.47281 * 15 14 13 35 35 H 1.09006 * 113.61214 * 334.56770 * 15 14 13 36 36 H 1.08997 * 113.61573 * 270.79830 * 16 15 14 37 37 H 1.09000 * 109.46887 * 60.00223 * 18 17 16 38 38 H 1.08990 * 109.47316 * 300.00312 * 18 17 16 39 39 H 1.08003 * 119.99639 * 359.97438 * 20 19 18 40 40 H 1.07995 * 120.00180 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.99928 * 180.02562 * 22 21 20 42 42 H 1.07998 * 120.00502 * 179.72536 * 23 22 21 43 43 H 1.08004 * 120.00304 * 180.27864 * 24 23 22 44 44 H 1.08995 * 113.61973 * 89.15761 * 25 16 15 45 45 H 1.09000 * 113.61386 * 220.06295 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6360 1.9707 -0.8636 5 6 3.5453 1.4431 -0.0699 6 1 4.1241 1.8279 0.7567 7 6 4.1837 0.9524 -1.1892 8 7 5.4770 0.7159 -1.1579 9 14 3.2115 0.6237 -2.7500 10 1 3.1075 1.8760 -3.5414 11 1 3.9040 -0.4145 -3.5550 12 1 1.8504 0.1482 -2.3945 13 7 1.6067 2.1150 1.2321 14 6 0.4036 2.9239 0.9951 15 6 0.4928 4.3453 1.5749 16 6 -0.9774 4.1816 1.9950 17 8 -1.2686 4.7261 3.2838 18 6 -2.6181 5.1709 3.4354 19 6 -2.8122 5.7222 4.8244 20 6 -2.5863 7.0631 5.0736 21 6 -2.7648 7.5690 6.3476 22 6 -3.1698 6.7342 7.3722 23 6 -3.3906 5.3923 7.1243 24 6 -3.2163 4.8873 5.8494 25 6 -0.7250 2.6648 2.0098 26 1 -0.3633 0.5396 0.8746 27 1 -0.3633 0.4876 -0.9046 28 1 -0.3632 -1.0272 0.0300 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.9261 0.3704 -1.9452 32 1 2.3504 2.6775 1.6177 33 1 0.0723 2.8958 -0.0430 34 1 0.6480 5.1160 0.8199 35 1 1.1803 4.4312 2.4165 36 1 -1.6876 4.4987 1.2313 37 1 -3.2968 4.3322 3.2797 38 1 -2.8286 5.9495 2.7024 39 1 -2.2703 7.7153 4.2729 40 1 -2.5887 8.6166 6.5421 41 1 -3.3096 7.1296 8.3675 42 1 -3.7027 4.7393 7.9258 43 1 -3.3932 3.8398 5.6546 44 1 -0.3710 2.2904 2.9703 45 1 -1.5515 2.0806 1.6052 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716220142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:57:19 Heat of formation + Delta-G solvation = -17.235358 kcal Electronic energy + Delta-G solvation = -22403.004914 eV Core-core repulsion = 19192.246145 eV Total energy + Delta-G solvation = -3210.758769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.67102 -39.98265 -38.05938 -36.38253 -34.12267 -32.74226 -31.85315 -31.78341 -28.88784 -27.02699 -26.53971 -24.63045 -23.61187 -23.46816 -22.25109 -21.46822 -20.67884 -18.84585 -17.97453 -17.61991 -17.17267 -16.59973 -16.49040 -15.90782 -15.74253 -15.43773 -15.08034 -14.81619 -14.54725 -14.30336 -14.22893 -13.78454 -13.67492 -13.56969 -13.29062 -13.23857 -12.82875 -12.72064 -12.62032 -12.34424 -12.04745 -11.93939 -11.81909 -11.73892 -11.55507 -11.40222 -11.09226 -10.97983 -10.54807 -10.31711 -9.81742 -9.74586 -9.03498 -8.31837 -6.33087 0.35240 0.50500 1.34529 1.37032 1.46987 2.34714 2.61671 3.02907 3.14516 3.57133 3.73003 3.76833 3.91111 3.97992 4.06589 4.08522 4.16628 4.29889 4.37496 4.41485 4.49318 4.53497 4.59701 4.67069 4.67451 4.78232 4.84733 4.91991 4.93856 5.07977 5.08772 5.16295 5.20668 5.24495 5.29221 5.36089 5.49269 5.55651 5.58757 5.61415 5.68414 5.83840 6.06187 6.10632 6.37577 6.52742 6.73129 6.88283 7.33512 8.84751 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.033774 B = 0.002720 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.842420 B =10293.333368 C =10504.806964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.197 3.803 4 H 0.005 0.995 5 C -0.536 4.536 6 H 0.034 0.966 7 C 0.018 3.982 8 N -0.944 5.944 9 Si 0.925 3.075 10 H -0.275 1.275 11 H -0.290 1.290 12 H -0.217 1.217 13 N -0.668 5.668 14 C 0.061 3.939 15 C -0.151 4.151 16 C 0.073 3.927 17 O -0.386 6.386 18 C 0.098 3.902 19 C -0.108 4.108 20 C -0.115 4.115 21 C -0.132 4.132 22 C -0.123 4.123 23 C -0.132 4.132 24 C -0.115 4.115 25 C -0.135 4.135 26 H 0.070 0.930 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.265 0.735 32 H 0.335 0.665 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.130 0.870 40 H 0.142 0.858 41 H 0.144 0.856 42 H 0.141 0.859 43 H 0.128 0.872 44 H 0.076 0.924 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.048 11.435 10.807 27.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.088 3.912 4 H 0.022 0.978 5 C -0.574 4.574 6 H 0.052 0.948 7 C -0.180 4.180 8 N -0.583 5.583 9 Si 0.749 3.251 10 H -0.201 1.201 11 H -0.216 1.216 12 H -0.140 1.140 13 N -0.298 5.298 14 C -0.049 4.049 15 C -0.190 4.190 16 C 0.015 3.985 17 O -0.306 6.306 18 C 0.022 3.978 19 C -0.108 4.108 20 C -0.133 4.133 21 C -0.150 4.150 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.133 4.133 25 C -0.173 4.173 26 H 0.089 0.911 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.148 0.852 40 H 0.160 0.840 41 H 0.162 0.838 42 H 0.159 0.841 43 H 0.146 0.854 44 H 0.095 0.905 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.111 10.830 11.090 27.828 hybrid contribution 0.927 0.398 -1.381 1.710 sum -22.184 11.228 9.709 26.692 Atomic orbital electron populations 1.21819 0.95240 1.01240 1.01778 1.21880 0.95887 0.97936 0.99735 1.19395 0.91992 0.92156 0.87675 0.97782 1.21574 0.91796 1.41430 1.02601 0.94771 1.25809 0.95629 0.94223 1.02381 1.70107 1.11593 1.45923 1.30712 0.86275 0.81703 0.78204 0.78878 1.20075 1.21615 1.13997 1.60529 1.07470 1.33088 1.28761 1.22974 0.92455 0.91635 0.97882 1.23700 0.97012 0.97655 1.00606 1.23545 0.96130 0.93566 0.85224 1.88027 1.28684 1.80675 1.33216 1.21478 0.84013 0.98636 0.93659 1.19850 1.01172 0.94427 0.95365 1.21313 0.98911 0.94982 0.98072 1.21468 0.99663 1.01105 0.92757 1.21546 0.98512 0.93808 1.00175 1.21468 1.00284 0.96319 0.96952 1.21316 0.98918 0.99948 0.93118 1.23610 0.97890 0.96029 0.99797 0.91084 0.93590 0.92874 0.93865 0.94050 0.92600 0.84613 0.89934 0.90569 0.90276 0.87334 0.91489 0.91243 0.85229 0.83997 0.83793 0.84088 0.85395 0.90506 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 9.37 71.98 0.67 -4.13 16 2 C -0.12 -4.97 4.97 30.59 0.15 -4.82 16 3 C 0.20 9.04 1.79 44.17 0.08 9.12 16 4 H 0.00 0.21 6.00 -2.39 -0.01 0.20 16 5 C -0.54 -30.40 9.02 25.60 0.23 -30.17 16 6 H 0.03 2.16 7.72 -2.91 -0.02 2.14 16 7 C 0.02 1.03 5.37 84.66 0.45 1.49 16 8 N -0.94 -59.11 13.96 21.45 0.30 -58.81 16 9 Si 0.93 43.06 25.88 68.60 1.78 44.83 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.22 -9.06 5.21 99.48 0.52 -8.54 16 13 N -0.67 -26.72 6.20 -470.32 -2.91 -29.64 16 14 C 0.06 1.92 3.00 45.50 0.14 2.05 16 15 C -0.15 -4.22 7.42 31.12 0.23 -3.99 16 16 C 0.07 1.73 4.29 31.12 0.13 1.87 16 17 O -0.39 -9.86 10.34 -148.98 -1.54 -11.40 16 18 C 0.10 1.90 5.91 71.24 0.42 2.32 16 19 C -0.11 -2.19 5.51 -19.87 -0.11 -2.30 16 20 C -0.11 -2.12 9.70 22.27 0.22 -1.91 16 21 C -0.13 -2.09 10.05 22.27 0.22 -1.87 16 22 C -0.12 -1.83 10.05 22.27 0.22 -1.60 16 23 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 24 C -0.11 -2.19 9.70 22.27 0.22 -1.97 16 25 C -0.13 -3.58 6.54 31.18 0.20 -3.38 16 26 H 0.07 2.25 4.94 -2.39 -0.01 2.24 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.04 1.92 4.50 -2.39 -0.01 1.91 16 30 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 32 H 0.34 14.23 7.48 -89.69 -0.67 13.56 16 33 H 0.08 2.56 7.25 -2.39 -0.02 2.54 16 34 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.08 2.44 7.97 -2.38 -0.02 2.42 16 36 H 0.11 2.00 7.88 -2.39 -0.02 1.98 16 37 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 38 H 0.07 1.11 8.09 -2.39 -0.02 1.10 16 39 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 40 H 0.14 1.56 8.06 -2.91 -0.02 1.54 16 41 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 42 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 43 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 44 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 45 H 0.08 1.84 7.55 -2.39 -0.02 1.82 16 Total: -1.00 -67.14 355.30 1.44 -65.70 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: 0.10 Total: 30.52 kcal Atomic # 6 Polarization: -44.92 SS G_CDS: 3.71 Total: -41.21 kcal Atomic # 7 Polarization: -85.83 SS G_CDS: -2.61 Total: -88.44 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -1.54 Total: -11.40 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.78 Total: 44.83 kcal Total: -67.14 1.44 -65.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716220142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.468 kcal (2) G-P(sol) polarization free energy of solvation -67.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds