Wall clock time and date at job start Tue Mar 31 2020 06:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47257 * 2 1 4 4 N 1.46896 * 109.47007 * 119.99582 * 2 1 3 5 5 C 1.46904 * 111.00284 * 170.18753 * 4 2 1 6 6 C 1.50694 * 109.47034 * 293.95803 * 5 4 2 7 7 H 1.07998 * 120.00249 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99907 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99709 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99833 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47368 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47280 * 120.00275 * 10 8 6 13 13 H 1.48497 * 109.46983 * 239.99862 * 10 8 6 14 14 C 1.46906 * 111.00367 * 294.14241 * 4 2 1 15 15 C 1.50700 * 109.47105 * 163.94265 * 14 4 2 16 16 C 1.38280 * 120.11833 * 275.14706 * 15 14 4 17 17 C 1.37940 * 120.35023 * 179.97438 * 16 15 14 18 18 C 1.39282 * 120.23753 * 0.55370 * 17 16 15 19 19 C 1.38885 * 118.87601 * 359.40981 * 18 17 16 20 20 C 1.37739 * 120.78513 * 0.42078 * 19 18 17 21 21 C 1.51646 * 107.03745 * 180.67975 * 19 18 17 22 22 C 1.54710 * 101.92021 * 15.47388 * 21 19 18 23 23 H 1.08998 * 110.74812 * 93.01535 * 22 21 19 24 24 C 1.53000 * 110.75124 * 216.18294 * 22 21 19 25 25 O 1.36138 * 129.88266 * 179.09501 * 18 17 16 26 26 H 1.09001 * 109.47203 * 66.19628 * 1 2 3 27 27 H 1.09002 * 109.47183 * 186.19737 * 1 2 3 28 28 H 1.09005 * 109.47250 * 306.20272 * 1 2 3 29 29 H 1.08996 * 109.47345 * 239.99682 * 2 1 3 30 30 H 1.08996 * 109.47203 * 59.99595 * 3 2 1 31 31 H 1.09000 * 109.47516 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46687 * 299.99827 * 3 2 1 33 33 H 1.09003 * 109.46736 * 53.95529 * 5 4 2 34 34 H 1.09001 * 109.47229 * 173.95335 * 5 4 2 35 35 H 0.97006 * 119.99635 * 180.02562 * 9 8 6 36 36 H 1.08995 * 109.47081 * 283.94868 * 14 4 2 37 37 H 1.09007 * 109.46710 * 43.94894 * 14 4 2 38 38 H 1.08004 * 119.82697 * 0.18145 * 16 15 14 39 39 H 1.08001 * 119.87908 * 180.32653 * 17 16 15 40 40 H 1.08002 * 120.00673 * 179.76414 * 20 19 18 41 41 H 1.08994 * 110.94061 * 133.62880 * 21 19 18 42 42 H 1.08997 * 110.94123 * 257.28169 * 21 19 18 43 43 H 1.09000 * 109.46580 * 59.99857 * 24 22 21 44 44 H 1.08994 * 109.47031 * 180.02562 * 24 22 21 45 45 H 1.09000 * 109.46833 * 300.00249 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4692 -0.9178 1.1224 6 6 3.7688 -1.8825 0.0042 7 1 2.9630 -2.2879 -0.5897 8 6 5.0717 -2.2474 -0.2609 9 7 6.0529 -1.7541 0.4626 10 14 5.4430 -3.4438 -1.6466 11 1 4.1744 -3.8510 -2.3023 12 1 6.3276 -2.7880 -2.6431 13 1 6.1224 -4.6438 -1.0958 14 6 1.6662 0.0498 2.4170 15 6 1.8209 -0.8496 3.6163 16 6 0.7904 -1.6932 3.9884 17 6 0.9270 -2.5188 5.0850 18 6 2.1010 -2.5013 5.8342 19 6 3.1292 -1.6505 5.4499 20 6 2.9920 -0.8295 4.3525 21 6 4.2684 -1.8598 6.4288 22 6 3.8655 -3.1900 7.1083 23 1 4.3234 -4.0379 6.5990 24 6 4.2475 -3.1795 8.5898 25 8 2.4370 -3.2099 6.9470 26 1 -0.3633 0.4148 -0.9402 27 1 -0.3634 -1.0217 0.1109 28 1 -0.3634 0.6070 0.8293 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9564 0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.9744 0.0289 0.9308 34 1 3.8228 -1.3339 2.0658 35 1 6.9696 -2.0106 0.2759 36 1 2.3256 0.9114 2.5215 37 1 0.6327 0.3894 2.3484 38 1 -0.1251 -1.7081 3.4155 39 1 0.1192 -3.1785 5.3657 40 1 3.7982 -0.1699 4.0672 41 1 5.2185 -1.9622 5.9047 42 1 4.3119 -1.0483 7.1552 43 1 3.7347 -2.3588 9.0913 44 1 3.9552 -4.1247 9.0471 45 1 5.3252 -3.0475 8.6861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720828263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:59 Heat of formation + Delta-G solvation = -11.165676 kcal Electronic energy + Delta-G solvation = -23511.346962 eV Core-core repulsion = 20300.851394 eV Total energy + Delta-G solvation = -3210.495568 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.87251 -38.35425 -36.69791 -33.00067 -32.75583 -31.76721 -30.76660 -29.60525 -27.34550 -26.56777 -26.20647 -24.35097 -22.16819 -21.80533 -21.50565 -20.73531 -18.60317 -17.25749 -16.54413 -16.12252 -15.78692 -15.08566 -14.74478 -14.49208 -14.10313 -13.83039 -13.47193 -13.23143 -12.96899 -12.88978 -12.83642 -12.64764 -12.43328 -12.19274 -12.03065 -11.90804 -11.44715 -11.33454 -11.26008 -11.07153 -10.77724 -10.66041 -10.61592 -10.54976 -10.38865 -10.31831 -9.96618 -9.68299 -9.10254 -8.48475 -8.37049 -7.66254 -7.14058 -5.99957 -3.99417 1.70056 1.77540 3.31731 3.39421 3.40535 3.44321 4.04716 4.46023 4.61043 4.63245 4.96958 5.07856 5.16836 5.23987 5.34107 5.36301 5.41163 5.54374 5.60938 5.61554 5.73773 5.78473 5.81343 5.89314 5.96207 5.98105 6.04395 6.06024 6.09642 6.15293 6.29016 6.36205 6.47559 6.54537 6.66184 6.76539 6.80216 6.90782 6.97459 7.09673 7.39861 7.45238 7.54211 7.84747 8.16317 8.28258 8.60642 9.08207 9.63984 11.10948 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.005285 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.606025 B = 5297.044676 C = 6737.984958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.081 3.919 3 C -0.181 4.181 4 N -0.524 5.524 5 C 0.188 3.812 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.899 5.899 10 Si 0.893 3.107 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.093 3.907 15 C -0.083 4.083 16 C -0.067 4.067 17 C -0.142 4.142 18 C 0.093 3.907 19 C -0.174 4.174 20 C -0.053 4.053 21 C -0.105 4.105 22 C 0.076 3.924 23 H 0.085 0.915 24 C -0.147 4.147 25 O -0.309 6.309 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.047 0.953 33 H -0.007 1.007 34 H 0.036 0.964 35 H 0.259 0.741 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.917 2.371 10.947 13.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.028 4.028 3 C -0.240 4.240 4 N -0.248 5.248 5 C 0.063 3.937 6 C -0.540 4.540 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.721 3.279 11 H -0.197 1.197 12 H -0.212 1.212 13 H -0.211 1.211 14 C -0.035 4.035 15 C -0.084 4.084 16 C -0.085 4.085 17 C -0.161 4.161 18 C 0.048 3.952 19 C -0.175 4.175 20 C -0.072 4.072 21 C -0.142 4.142 22 C 0.020 3.980 23 H 0.103 0.897 24 C -0.204 4.204 25 O -0.224 6.224 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.111 0.889 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.011 0.989 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.090 0.910 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.109 0.891 42 H 0.104 0.896 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.081 1.779 11.144 13.322 hybrid contribution 1.066 0.119 -0.878 1.386 sum -6.016 1.898 10.266 12.049 Atomic orbital electron populations 1.21886 0.96211 1.01688 1.00154 1.21592 0.93620 0.91965 0.95615 1.22444 1.02476 0.98595 1.00500 1.62379 1.18909 1.44607 0.98911 1.19813 0.80376 0.95452 0.98036 1.21206 0.92019 1.25583 1.15220 0.91971 1.24952 0.96320 0.96585 0.96692 1.69966 0.99408 1.44592 1.39928 0.86515 0.78296 0.80984 0.82088 1.19676 1.21199 1.21131 1.20961 1.00162 0.93204 0.89201 1.19693 0.93430 0.98929 0.96369 1.20644 0.99003 0.94229 0.94647 1.20134 0.96526 1.03152 0.96261 1.19455 0.95623 0.92377 0.87736 1.20620 0.96877 1.00802 0.99224 1.20243 0.96957 0.97572 0.92384 1.21815 0.98268 0.97222 0.96872 1.23325 0.79269 0.97985 0.97427 0.89743 1.21858 1.01905 1.03153 0.93468 1.86767 1.23942 1.70907 1.40738 0.93329 0.92177 0.93603 0.88950 0.93558 0.91908 0.93357 0.98900 0.94642 0.93163 0.94904 0.91014 0.85445 0.86080 0.86051 0.89053 0.89609 0.91596 0.91583 0.90436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.00 37.16 0.33 -1.80 16 2 C 0.08 1.51 2.78 -67.71 -0.19 1.32 16 3 C -0.18 -3.11 8.50 37.16 0.32 -2.79 16 4 N -0.52 -10.92 4.39 -229.52 -1.01 -11.93 16 5 C 0.19 4.77 4.44 -4.98 -0.02 4.75 16 6 C -0.50 -13.96 8.37 -34.44 -0.29 -14.24 16 7 H 0.06 1.73 7.18 -52.49 -0.38 1.35 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 9 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 10 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 C 0.09 1.65 3.85 -4.97 -0.02 1.63 16 15 C -0.08 -1.49 4.94 -104.57 -0.52 -2.01 16 16 C -0.07 -1.09 9.70 -39.68 -0.38 -1.48 16 17 C -0.14 -2.28 10.06 -39.30 -0.40 -2.68 16 18 C 0.09 1.58 7.04 -38.95 -0.27 1.30 16 19 C -0.17 -2.97 6.27 -104.10 -0.65 -3.62 16 20 C -0.05 -0.96 8.27 -39.72 -0.33 -1.29 16 21 C -0.10 -1.44 6.65 -26.52 -0.18 -1.61 16 22 C 0.08 0.98 4.25 -25.83 -0.11 0.87 16 23 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 24 C -0.15 -1.39 9.59 37.16 0.36 -1.03 16 25 O -0.31 -4.89 10.82 -20.18 -0.22 -5.11 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.04 0.63 6.54 -51.93 -0.34 0.29 16 29 H 0.09 1.95 6.65 -51.93 -0.35 1.60 16 30 H 0.05 0.72 6.69 -51.93 -0.35 0.38 16 31 H 0.06 1.23 6.57 -51.93 -0.34 0.89 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 33 H -0.01 -0.18 6.39 -51.93 -0.33 -0.51 16 34 H 0.04 0.97 6.14 -51.93 -0.32 0.65 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.03 0.59 7.05 -51.93 -0.37 0.23 16 37 H 0.07 1.12 6.01 -51.93 -0.31 0.81 16 38 H 0.13 1.83 8.06 -52.48 -0.42 1.41 16 39 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.12 2.22 8.02 -52.49 -0.42 1.80 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.09 1.02 7.93 -51.93 -0.41 0.61 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 353.27 15.07 5.32 5.32 Total: -1.00 -30.53 353.27 -9.91 -40.44 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.28 Total: 1.54 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -2.45 Total: -21.22 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.27 Total: -37.68 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.22 Total: -5.11 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.53 -9.91 -40.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720828263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.270 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds