Wall clock time and date at job start Tue Mar 31 2020 06:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47257 * 2 1 4 4 N 1.46896 * 109.47007 * 119.99582 * 2 1 3 5 5 C 1.46904 * 111.00284 * 170.18753 * 4 2 1 6 6 C 1.50694 * 109.47034 * 293.95803 * 5 4 2 7 7 H 1.07998 * 120.00249 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99907 * 179.97438 * 6 5 4 9 9 N 1.31514 * 119.99709 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 119.99833 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47368 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47280 * 120.00275 * 10 8 6 13 13 H 1.48497 * 109.46983 * 239.99862 * 10 8 6 14 14 C 1.46906 * 111.00367 * 294.14241 * 4 2 1 15 15 C 1.50700 * 109.47105 * 163.94265 * 14 4 2 16 16 C 1.38280 * 120.11833 * 275.14706 * 15 14 4 17 17 C 1.37940 * 120.35023 * 179.97438 * 16 15 14 18 18 C 1.39282 * 120.23753 * 0.55370 * 17 16 15 19 19 C 1.38885 * 118.87601 * 359.40981 * 18 17 16 20 20 C 1.37739 * 120.78513 * 0.42078 * 19 18 17 21 21 C 1.51646 * 107.03745 * 180.67975 * 19 18 17 22 22 C 1.54710 * 101.92021 * 15.47388 * 21 19 18 23 23 H 1.08998 * 110.74812 * 93.01535 * 22 21 19 24 24 C 1.53000 * 110.75124 * 216.18294 * 22 21 19 25 25 O 1.36138 * 129.88266 * 179.09501 * 18 17 16 26 26 H 1.09001 * 109.47203 * 66.19628 * 1 2 3 27 27 H 1.09002 * 109.47183 * 186.19737 * 1 2 3 28 28 H 1.09005 * 109.47250 * 306.20272 * 1 2 3 29 29 H 1.08996 * 109.47345 * 239.99682 * 2 1 3 30 30 H 1.08996 * 109.47203 * 59.99595 * 3 2 1 31 31 H 1.09000 * 109.47516 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46687 * 299.99827 * 3 2 1 33 33 H 1.09003 * 109.46736 * 53.95529 * 5 4 2 34 34 H 1.09001 * 109.47229 * 173.95335 * 5 4 2 35 35 H 0.97006 * 119.99635 * 180.02562 * 9 8 6 36 36 H 1.08995 * 109.47081 * 283.94868 * 14 4 2 37 37 H 1.09007 * 109.46710 * 43.94894 * 14 4 2 38 38 H 1.08004 * 119.82697 * 0.18145 * 16 15 14 39 39 H 1.08001 * 119.87908 * 180.32653 * 17 16 15 40 40 H 1.08002 * 120.00673 * 179.76414 * 20 19 18 41 41 H 1.08994 * 110.94061 * 133.62880 * 21 19 18 42 42 H 1.08997 * 110.94123 * 257.28169 * 21 19 18 43 43 H 1.09000 * 109.46580 * 59.99857 * 24 22 21 44 44 H 1.08994 * 109.47031 * 180.02562 * 24 22 21 45 45 H 1.09000 * 109.46833 * 300.00249 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.4692 -0.9178 1.1224 6 6 3.7688 -1.8825 0.0042 7 1 2.9630 -2.2879 -0.5897 8 6 5.0717 -2.2474 -0.2609 9 7 6.0529 -1.7541 0.4626 10 14 5.4430 -3.4438 -1.6466 11 1 4.1744 -3.8510 -2.3023 12 1 6.3276 -2.7880 -2.6431 13 1 6.1224 -4.6438 -1.0958 14 6 1.6662 0.0498 2.4170 15 6 1.8209 -0.8496 3.6163 16 6 0.7904 -1.6932 3.9884 17 6 0.9270 -2.5188 5.0850 18 6 2.1010 -2.5013 5.8342 19 6 3.1292 -1.6505 5.4499 20 6 2.9920 -0.8295 4.3525 21 6 4.2684 -1.8598 6.4288 22 6 3.8655 -3.1900 7.1083 23 1 4.3234 -4.0379 6.5990 24 6 4.2475 -3.1795 8.5898 25 8 2.4370 -3.2099 6.9470 26 1 -0.3633 0.4148 -0.9402 27 1 -0.3634 -1.0217 0.1109 28 1 -0.3634 0.6070 0.8293 29 1 1.8933 -0.5139 -0.8899 30 1 1.6767 1.9564 0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.9744 0.0289 0.9308 34 1 3.8228 -1.3339 2.0658 35 1 6.9696 -2.0106 0.2759 36 1 2.3256 0.9114 2.5215 37 1 0.6327 0.3894 2.3484 38 1 -0.1251 -1.7081 3.4155 39 1 0.1192 -3.1785 5.3657 40 1 3.7982 -0.1699 4.0672 41 1 5.2185 -1.9622 5.9047 42 1 4.3119 -1.0483 7.1552 43 1 3.7347 -2.3588 9.0913 44 1 3.9552 -4.1247 9.0471 45 1 5.3252 -3.0475 8.6861 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720828263.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:58 Heat of formation + Delta-G solvation = -28.472319 kcal Electronic energy + Delta-G solvation = -23512.097434 eV Core-core repulsion = 20300.851394 eV Total energy + Delta-G solvation = -3211.246040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.08400 -39.82456 -38.07758 -34.86508 -34.10577 -33.14301 -31.96705 -31.18309 -28.95654 -27.93780 -27.48018 -25.94550 -24.00037 -23.07606 -22.62395 -22.05725 -20.16442 -18.45256 -18.32554 -17.69903 -17.19684 -16.56454 -16.30935 -16.00837 -15.69348 -15.11041 -14.78635 -14.66205 -14.51187 -14.06272 -14.05581 -13.97189 -13.67154 -13.63920 -13.30566 -13.13520 -12.96047 -12.72737 -12.66466 -12.55476 -12.49298 -12.31559 -12.09673 -11.99341 -11.73214 -11.64584 -11.59731 -11.32965 -11.07088 -10.57774 -9.76623 -9.00047 -8.81990 -8.17261 -6.24798 0.39273 0.43701 1.38027 1.39295 1.52049 2.25858 2.40631 2.74007 3.15657 3.44472 3.54437 3.59430 3.93890 3.99396 4.04402 4.16008 4.21902 4.26855 4.40494 4.45985 4.50231 4.62118 4.63326 4.68778 4.72847 4.74192 4.84177 4.89435 4.91753 4.99910 5.05520 5.12379 5.20498 5.22228 5.31031 5.32476 5.34946 5.45292 5.51591 5.59501 5.68833 5.72474 5.77289 6.14055 6.28126 6.49136 6.74654 6.92765 7.43624 8.93475 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.012790 B = 0.005285 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.606025 B = 5297.044676 C = 6737.984958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.074 3.926 3 C -0.172 4.172 4 N -0.530 5.530 5 C 0.208 3.792 6 C -0.515 4.515 7 H 0.058 0.942 8 C 0.003 3.997 9 N -0.933 5.933 10 Si 0.960 3.040 11 H -0.264 1.264 12 H -0.279 1.279 13 H -0.282 1.282 14 C 0.098 3.902 15 C -0.102 4.102 16 C -0.067 4.067 17 C -0.144 4.144 18 C 0.081 3.919 19 C -0.191 4.191 20 C -0.074 4.074 21 C -0.104 4.104 22 C 0.071 3.929 23 H 0.083 0.917 24 C -0.139 4.139 25 O -0.316 6.316 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.025 0.975 32 H 0.072 0.928 33 H -0.035 1.035 34 H 0.009 0.991 35 H 0.261 0.739 36 H 0.024 0.976 37 H 0.102 0.898 38 H 0.151 0.849 39 H 0.146 0.854 40 H 0.104 0.896 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.548 1.863 11.218 14.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.034 4.034 3 C -0.231 4.231 4 N -0.253 5.253 5 C 0.082 3.918 6 C -0.554 4.554 7 H 0.076 0.924 8 C -0.195 4.195 9 N -0.574 5.574 10 Si 0.785 3.215 11 H -0.188 1.188 12 H -0.204 1.204 13 H -0.208 1.208 14 C -0.029 4.029 15 C -0.102 4.102 16 C -0.085 4.085 17 C -0.163 4.163 18 C 0.036 3.964 19 C -0.192 4.192 20 C -0.093 4.093 21 C -0.141 4.141 22 C 0.015 3.985 23 H 0.101 0.899 24 C -0.196 4.196 25 O -0.231 6.231 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.045 0.955 32 H 0.091 0.909 33 H -0.017 1.017 34 H 0.027 0.973 35 H 0.070 0.930 36 H 0.042 0.958 37 H 0.120 0.880 38 H 0.169 0.831 39 H 0.164 0.836 40 H 0.123 0.877 41 H 0.107 0.893 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.730 1.278 11.416 14.428 hybrid contribution 1.570 0.295 -0.925 1.846 sum -7.160 1.573 10.491 12.798 Atomic orbital electron populations 1.21785 0.92634 1.02131 1.02229 1.21675 0.96325 0.92009 0.93383 1.22341 1.00050 0.98215 1.02516 1.62293 1.15607 1.46394 1.01034 1.19372 0.83237 0.93358 0.95830 1.21515 0.92166 1.25919 1.15790 0.92360 1.25808 0.96185 0.98330 0.99161 1.70092 0.99799 1.45943 1.41578 0.85469 0.78321 0.78613 0.79064 1.18815 1.20434 1.20761 1.20996 1.01449 0.92619 0.87870 1.19827 0.93995 0.99883 0.96543 1.20895 0.99291 0.93481 0.94820 1.20479 0.96907 1.03074 0.95808 1.19731 0.95958 0.92492 0.88192 1.20973 0.98404 1.00447 0.99340 1.20275 0.97055 0.98401 0.93595 1.21916 0.97050 0.98531 0.96628 1.23592 0.77845 0.97240 0.99777 0.89936 1.21869 1.03275 1.03805 0.90660 1.86758 1.25604 1.70644 1.40140 0.91096 0.92532 0.91686 0.92036 0.91888 0.95539 0.90907 1.01750 0.97334 0.93001 0.95790 0.87993 0.83109 0.83624 0.87743 0.89350 0.87730 0.91333 0.90649 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 9.00 71.98 0.65 -2.92 16 2 C 0.07 2.75 2.78 44.92 0.12 2.87 16 3 C -0.17 -5.85 8.50 71.98 0.61 -5.24 16 4 N -0.53 -22.34 4.39 -880.06 -3.87 -26.21 16 5 C 0.21 11.06 4.44 85.55 0.38 11.44 16 6 C -0.52 -29.53 8.37 25.60 0.21 -29.32 16 7 H 0.06 3.31 7.18 -2.91 -0.02 3.29 16 8 C 0.00 0.16 5.46 84.66 0.46 0.62 16 9 N -0.93 -56.69 13.29 21.45 0.28 -56.41 16 10 Si 0.96 45.15 29.54 68.60 2.03 47.17 16 11 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 C 0.10 3.47 3.85 85.56 0.33 3.80 16 15 C -0.10 -3.67 4.94 -19.83 -0.10 -3.77 16 16 C -0.07 -2.10 9.70 22.21 0.22 -1.88 16 17 C -0.14 -4.46 10.06 22.45 0.23 -4.24 16 18 C 0.08 2.73 7.04 22.68 0.16 2.89 16 19 C -0.19 -6.64 6.27 -19.53 -0.12 -6.76 16 20 C -0.07 -2.83 8.27 22.18 0.18 -2.65 16 21 C -0.10 -2.87 6.65 30.73 0.20 -2.66 16 22 C 0.07 1.77 4.25 31.18 0.13 1.90 16 23 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 24 C -0.14 -2.34 9.59 71.98 0.69 -1.65 16 25 O -0.32 -9.74 10.82 -95.12 -1.03 -10.77 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.54 6.54 -2.38 -0.02 1.52 16 29 H 0.06 2.63 6.65 -2.39 -0.02 2.62 16 30 H 0.06 1.90 6.69 -2.39 -0.02 1.88 16 31 H 0.03 1.06 6.57 -2.39 -0.02 1.05 16 32 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 33 H -0.04 -2.02 6.39 -2.39 -0.02 -2.04 16 34 H 0.01 0.50 6.14 -2.39 -0.01 0.48 16 35 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 36 H 0.02 0.89 7.05 -2.39 -0.02 0.87 16 37 H 0.10 2.95 6.01 -2.38 -0.01 2.94 16 38 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 39 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 40 H 0.10 4.18 8.02 -2.91 -0.02 4.15 16 41 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.10 2.42 7.93 -2.39 -0.02 2.40 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -67.94 353.27 2.74 -65.20 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.96 Total: 18.57 kcal Atomic # 6 Polarization: -41.92 SS G_CDS: 4.36 Total: -37.56 kcal Atomic # 7 Polarization: -79.04 SS G_CDS: -3.58 Total: -82.62 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -1.03 Total: -10.77 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -67.94 2.74 -65.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720828263.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.724 kcal (2) G-P(sol) polarization free energy of solvation -67.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds