Wall clock time and date at job start Tue Mar 31 2020 06:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47074 * 2 1 4 4 N 1.46898 * 109.46673 * 119.99880 * 2 1 3 5 5 C 1.46899 * 111.00220 * 309.69980 * 4 2 1 6 6 C 1.50704 * 109.47139 * 193.60376 * 5 4 2 7 7 C 1.38307 * 119.92691 * 84.42558 * 6 5 4 8 8 C 1.38101 * 120.06590 * 180.25824 * 7 6 5 9 9 C 1.38881 * 119.92946 * 359.46621 * 8 7 6 10 10 O 1.35754 * 120.06611 * 180.25737 * 9 8 7 11 11 C 1.34826 * 116.99957 * 185.25142 * 10 9 8 12 12 H 1.08004 * 119.99787 * 5.73761 * 11 10 9 13 13 C 1.38649 * 120.00217 * 185.73449 * 11 10 9 14 14 N 1.31551 * 120.00145 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00110 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47147 * 0.02562 * 15 13 11 17 17 H 1.48510 * 109.47134 * 120.00084 * 15 13 11 18 18 H 1.48504 * 109.47452 * 240.00077 * 15 13 11 19 19 C 1.38878 * 119.86443 * 0.52998 * 9 8 7 20 20 C 1.38106 * 119.92708 * 359.72876 * 19 9 8 21 21 C 1.46904 * 111.00158 * 73.66003 * 4 2 1 22 22 C 1.53001 * 109.46873 * 66.04384 * 21 4 2 23 23 C 1.53008 * 117.49308 * 243.61885 * 22 21 4 24 24 C 1.52998 * 60.00133 * 252.51135 * 23 22 21 25 25 H 1.09003 * 109.47236 * 299.99815 * 1 2 3 26 26 H 1.08998 * 109.47099 * 60.00196 * 1 2 3 27 27 H 1.08998 * 109.47042 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46892 * 239.99727 * 2 1 3 29 29 H 1.08994 * 109.47288 * 184.15757 * 3 2 1 30 30 H 1.09002 * 109.47278 * 304.15928 * 3 2 1 31 31 H 1.09004 * 109.47474 * 64.15440 * 3 2 1 32 32 H 1.09000 * 109.46826 * 73.60982 * 5 4 2 33 33 H 1.08994 * 109.47070 * 313.60691 * 5 4 2 34 34 H 1.07992 * 119.96548 * 359.97438 * 7 6 5 35 35 H 1.08000 * 120.03005 * 179.72463 * 8 7 6 36 36 H 0.97002 * 120.00821 * 179.97438 * 14 13 11 37 37 H 1.07994 * 120.03510 * 179.70314 * 19 9 8 38 38 H 1.07993 * 119.96165 * 179.97438 * 20 19 9 39 39 H 1.09002 * 109.46898 * 186.03962 * 21 4 2 40 40 H 1.08998 * 109.47120 * 306.04176 * 21 4 2 41 41 H 1.08992 * 115.55421 * 29.32693 * 22 21 4 42 42 H 1.08993 * 117.49802 * 0.02562 * 23 22 21 43 43 H 1.09007 * 117.49338 * 145.02291 * 23 22 21 44 44 H 1.09000 * 117.49901 * 252.51308 * 24 23 22 45 45 H 1.08999 * 117.49700 * 107.48640 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.3691 -0.1728 2.4098 6 6 2.1169 -0.6523 3.6272 7 6 3.2276 0.0413 4.0723 8 6 3.9181 -0.3985 5.1845 9 6 3.4895 -1.5322 5.8626 10 8 4.1631 -1.9640 6.9593 11 6 3.7607 -3.1292 7.5054 12 1 2.9995 -3.7198 7.0174 13 6 4.3241 -3.5693 8.6933 14 7 5.2510 -2.8497 9.2880 15 14 3.7660 -5.1833 9.4503 16 1 2.7202 -5.7966 8.5929 17 1 4.9239 -6.1073 9.5553 18 1 3.2109 -4.9295 10.8040 19 6 2.3738 -2.2264 5.4132 20 6 1.6907 -1.7845 4.2972 21 6 1.8313 -2.1447 1.0827 22 6 2.7207 -2.6858 -0.0385 23 6 2.0273 -3.3118 -1.2503 24 6 2.7570 -4.2018 -0.2422 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 3.1274 1.4434 -0.0745 30 1 1.6171 1.9774 -0.8504 31 1 1.7388 1.9344 0.9249 32 1 0.3403 -0.5303 2.4512 33 1 1.3745 0.9168 2.3858 34 1 3.5579 0.9251 3.5469 35 1 4.7880 0.1410 5.5289 36 1 5.6450 -3.1573 10.1193 37 1 2.0410 -3.1110 5.9357 38 1 0.8233 -2.3242 3.9470 39 1 2.1020 -2.6230 2.0240 40 1 0.7873 -2.3584 0.8536 41 1 3.6424 -2.1319 -0.2161 42 1 0.9377 -3.3377 -1.2489 43 1 2.4930 -3.1696 -2.2256 44 1 3.7026 -4.6451 -0.5542 45 1 2.1473 -4.8135 0.4227 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731211717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:24 Heat of formation + Delta-G solvation = 4.907163 kcal Electronic energy + Delta-G solvation = -23012.006088 eV Core-core repulsion = 19802.207491 eV Total energy + Delta-G solvation = -3209.798597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.93155 -39.96720 -38.20722 -37.25178 -34.35292 -33.02779 -31.75169 -31.01717 -28.09925 -27.87793 -27.13867 -25.04144 -23.58564 -23.21676 -22.33362 -21.60070 -20.09868 -19.79164 -18.80308 -17.42141 -16.54095 -16.34819 -16.32075 -16.03174 -15.56700 -15.45931 -15.35119 -15.02313 -14.57618 -14.34128 -14.19524 -13.99400 -13.73299 -13.44482 -13.30364 -12.98596 -12.70693 -12.57497 -12.41211 -12.34674 -12.30729 -12.13085 -12.10360 -12.03419 -11.77940 -11.54982 -11.17818 -11.10866 -10.78001 -10.72315 -9.73570 -9.13217 -8.84611 -8.46735 -6.14597 0.62882 0.71451 1.34538 1.42923 1.52865 2.17782 2.74552 2.92357 3.06402 3.31786 3.54137 3.85161 4.00847 4.05905 4.08050 4.11992 4.18067 4.22701 4.34591 4.42542 4.49761 4.53028 4.63009 4.65566 4.73636 4.79859 4.83119 4.87811 4.95595 5.00481 5.05724 5.07619 5.11876 5.13057 5.16213 5.27480 5.33109 5.37132 5.41811 5.49931 5.61538 5.73704 5.84164 6.03993 6.22111 6.28809 6.37705 6.98269 7.80361 8.77026 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.003656 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.749988 B = 7656.096810 C = 8479.397601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.076 3.924 3 C -0.141 4.141 4 N -0.533 5.533 5 C 0.114 3.886 6 C -0.149 4.149 7 C -0.046 4.046 8 C -0.205 4.205 9 C 0.113 3.887 10 O -0.234 6.234 11 C -0.412 4.412 12 H 0.099 0.901 13 C -0.023 4.023 14 N -0.921 5.921 15 Si 1.018 2.982 16 H -0.252 1.252 17 H -0.268 1.268 18 H -0.268 1.268 19 C -0.242 4.242 20 C -0.063 4.063 21 C 0.086 3.914 22 C -0.151 4.151 23 C -0.166 4.166 24 C -0.187 4.187 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.092 0.908 34 H 0.143 0.857 35 H 0.111 0.889 36 H 0.272 0.728 37 H 0.115 0.885 38 H 0.131 0.869 39 H 0.060 0.940 40 H 0.041 0.959 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.706 2.952 -21.353 24.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.032 4.032 3 C -0.199 4.199 4 N -0.256 5.256 5 C -0.013 4.013 6 C -0.150 4.150 7 C -0.064 4.064 8 C -0.224 4.224 9 C 0.063 3.937 10 O -0.141 6.141 11 C -0.488 4.488 12 H 0.117 0.883 13 C -0.220 4.220 14 N -0.560 5.560 15 Si 0.837 3.163 16 H -0.175 1.175 17 H -0.193 1.193 18 H -0.193 1.193 19 C -0.261 4.261 20 C -0.082 4.082 21 C -0.042 4.042 22 C -0.169 4.169 23 C -0.203 4.203 24 C -0.224 4.224 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.160 0.840 35 H 0.129 0.871 36 H 0.081 0.919 37 H 0.133 0.867 38 H 0.149 0.851 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.121 0.879 44 H 0.115 0.885 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -9.898 3.150 -21.031 23.457 hybrid contribution -0.576 -0.952 0.908 1.436 sum -10.474 2.198 -20.124 22.792 Atomic orbital electron populations 1.22432 0.96987 1.01728 1.02854 1.21757 0.93109 0.95614 0.92743 1.21833 1.01335 0.94646 1.02072 1.62150 1.58045 1.03471 1.01982 1.20831 0.94139 1.00206 0.86147 1.19616 0.98918 0.97449 0.99022 1.20787 0.93488 0.99046 0.93123 1.20455 1.03926 0.98272 0.99791 1.19930 0.91655 0.94146 0.87977 1.83950 1.53503 1.38638 1.38007 1.21824 1.24100 0.95865 1.07010 0.88330 1.26573 0.96003 1.03762 0.95694 1.70187 1.26950 1.40307 1.18522 0.84543 0.78638 0.74880 0.78218 1.17546 1.19303 1.19255 1.21189 0.99140 1.03833 1.01918 1.20884 0.98405 0.95562 0.93329 1.21633 0.96676 0.88210 0.97677 1.22185 1.01365 0.95402 0.97988 1.23081 0.99614 1.03360 0.94260 1.22998 1.02939 0.92994 1.03508 0.92434 0.90961 0.93147 0.89676 0.92796 0.91023 0.92690 0.93615 0.88969 0.83960 0.87130 0.91857 0.86692 0.85124 0.92110 0.94105 0.88171 0.88497 0.87915 0.88506 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 8.42 71.98 0.61 -2.06 16 2 C 0.08 1.29 2.79 44.92 0.13 1.42 16 3 C -0.14 -2.20 9.29 71.98 0.67 -1.53 16 4 N -0.53 -11.79 4.39 -875.53 -3.84 -15.64 16 5 C 0.11 2.66 3.78 85.56 0.32 2.99 16 6 C -0.15 -4.71 4.86 -19.83 -0.10 -4.81 16 7 C -0.05 -1.60 9.71 22.25 0.22 -1.38 16 8 C -0.21 -9.02 9.99 22.39 0.22 -8.79 16 9 C 0.11 5.78 6.65 22.58 0.15 5.93 16 10 O -0.23 -14.44 9.76 -22.74 -0.22 -14.67 16 11 C -0.41 -24.48 9.44 67.92 0.64 -23.84 16 12 H 0.10 5.41 5.28 -2.91 -0.02 5.40 16 13 C -0.02 -1.33 5.49 84.83 0.47 -0.87 16 14 N -0.92 -57.39 13.67 21.61 0.30 -57.09 16 15 Si 1.02 43.52 29.55 68.60 2.03 45.54 16 16 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 18 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 19 C -0.24 -10.78 9.14 22.39 0.20 -10.57 16 20 C -0.06 -2.22 8.20 22.25 0.18 -2.04 16 21 C 0.09 1.95 4.98 86.30 0.43 2.38 16 22 C -0.15 -3.13 4.67 -10.79 -0.05 -3.18 16 23 C -0.17 -2.67 10.05 30.60 0.31 -2.36 16 24 C -0.19 -3.60 10.25 30.60 0.31 -3.28 16 25 H 0.06 0.88 6.61 -2.39 -0.02 0.86 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.78 6.73 -2.39 -0.02 0.76 16 28 H 0.09 1.44 6.83 -2.39 -0.02 1.43 16 29 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.88 6.32 -2.38 -0.02 0.86 16 32 H 0.05 1.00 6.94 -2.39 -0.02 0.98 16 33 H 0.09 1.94 6.11 -2.39 -0.01 1.92 16 34 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 35 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 36 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.12 5.26 5.70 -2.91 -0.02 5.24 16 38 H 0.13 3.81 8.05 -2.91 -0.02 3.78 16 39 H 0.06 1.71 6.03 -2.39 -0.01 1.69 16 40 H 0.04 0.85 6.33 -2.39 -0.02 0.83 16 41 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.10 1.42 8.03 -2.39 -0.02 1.40 16 43 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 45 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -69.08 356.80 3.94 -65.15 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: 0.97 Total: 28.70 kcal Atomic # 6 Polarization: -56.71 SS G_CDS: 4.71 Total: -52.00 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -3.55 Total: -72.73 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.22 Total: -14.67 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -69.08 3.94 -65.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731211717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.054 kcal (2) G-P(sol) polarization free energy of solvation -69.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds