Wall clock time and date at job start Tue Mar 31 2020 06:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.78150 * 2 1 4 4 C 1.50820 * 109.74852 * 120.71193 * 2 1 3 5 5 C 1.53813 * 111.61932 * 214.69621 * 4 2 1 6 6 C 1.54171 * 111.97169 * 319.04301 * 5 4 2 7 7 C 1.50810 * 112.54348 * 318.48603 * 6 5 4 8 8 C 1.54428 * 109.00878 * 93.10479 * 7 6 5 9 9 N 1.39777 * 111.70197 * 282.49633 * 8 7 6 10 10 C 1.46899 * 111.00245 * 189.17069 * 9 8 7 11 11 C 1.50700 * 109.46936 * 64.66883 * 10 9 8 12 12 C 1.38296 * 119.93665 * 263.32321 * 11 10 9 13 13 C 1.38097 * 120.07368 * 179.72812 * 12 11 10 14 14 C 1.38883 * 119.92823 * 0.54008 * 13 12 11 15 15 O 1.35754 * 120.06788 * 179.75126 * 14 13 12 16 16 C 1.34835 * 116.99605 * 185.94706 * 15 14 13 17 17 H 1.07998 * 120.00180 * 5.31170 * 16 15 14 18 18 C 1.38648 * 119.99673 * 185.31292 * 16 15 14 19 19 N 1.31565 * 120.00067 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00025 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46908 * 59.99869 * 20 18 16 22 22 H 1.48504 * 109.47182 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47093 * 300.00333 * 20 18 16 24 24 C 1.38884 * 119.85991 * 359.73424 * 14 13 12 25 25 C 1.38099 * 119.93267 * 359.97438 * 24 14 13 26 26 H 1.08997 * 109.47355 * 174.73788 * 1 2 3 27 27 H 1.09008 * 109.46879 * 294.74006 * 1 2 3 28 28 H 1.09002 * 109.47106 * 54.73295 * 1 2 3 29 29 H 1.09006 * 109.04707 * 335.24834 * 4 2 1 30 30 H 1.08995 * 109.04835 * 94.21119 * 4 2 1 31 31 H 1.09005 * 108.98084 * 79.68366 * 5 4 2 32 32 H 1.08996 * 108.97889 * 198.40197 * 5 4 2 33 33 H 1.09002 * 108.85471 * 79.29574 * 6 5 4 34 34 H 1.09002 * 108.85741 * 197.67790 * 6 5 4 35 35 H 1.09000 * 109.61453 * 333.20941 * 7 6 5 36 36 H 1.09007 * 109.49896 * 212.92779 * 7 6 5 37 37 H 1.09003 * 109.02660 * 161.94645 * 8 7 6 38 38 H 1.09003 * 109.02638 * 43.04750 * 8 7 6 39 39 H 1.08996 * 109.47553 * 184.66946 * 10 9 8 40 40 H 1.09002 * 109.47278 * 304.67306 * 10 9 8 41 41 H 1.08002 * 119.96174 * 359.97438 * 12 11 10 42 42 H 1.07996 * 120.03760 * 180.27072 * 13 12 11 43 43 H 0.96999 * 119.99711 * 179.97438 * 19 18 16 44 44 H 1.08002 * 120.02939 * 180.02562 * 24 14 13 45 45 H 1.07996 * 119.96492 * 180.02562 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0397 -0.7250 1.2204 5 6 3.3377 -0.0947 1.7531 6 6 4.2952 0.3049 0.6128 7 6 4.3576 -0.7325 -0.4800 8 6 3.3307 -0.3717 -1.5754 9 7 2.0288 -0.7095 -1.1948 10 6 1.0966 -0.5640 -2.3207 11 6 1.4539 -1.5536 -3.3997 12 6 2.2370 -1.1566 -4.4683 13 6 2.5708 -2.0625 -5.4557 14 6 2.1100 -3.3705 -5.3807 15 8 2.4322 -4.2620 -6.3524 16 6 1.8530 -5.4777 -6.2842 17 1 1.1032 -5.6773 -5.5330 18 6 2.2201 -6.4715 -7.1786 19 7 3.1332 -6.2282 -8.0940 20 14 1.4183 -8.1560 -7.0837 21 1 -0.0470 -8.0185 -7.2817 22 1 1.9813 -9.0325 -8.1421 23 1 1.6836 -8.7562 -5.7516 24 6 1.3190 -3.7645 -4.3092 25 6 0.9937 -2.8555 -3.3219 26 1 -0.3634 -1.0233 -0.0942 27 1 -0.3633 0.4301 0.9334 28 1 -0.3633 0.5934 -0.8391 29 1 1.2792 -0.6865 2.0004 30 1 2.2311 -1.7663 0.9615 31 1 3.0882 0.7932 2.3341 32 1 3.8395 -0.8120 2.4025 33 1 3.9583 1.2489 0.1844 34 1 5.2948 0.4442 1.0247 35 1 4.1213 -1.7133 -0.0673 36 1 5.3592 -0.7482 -0.9100 37 1 3.5837 -0.9077 -2.4902 38 1 3.3778 0.7002 -1.7674 39 1 0.0796 -0.7527 -1.9771 40 1 1.1636 0.4482 -2.7195 41 1 2.5912 -0.1381 -4.5285 42 1 3.1860 -1.7530 -6.2877 43 1 3.3902 -6.9237 -8.7194 44 1 0.9595 -4.7811 -4.2479 45 1 0.3790 -3.1614 -2.4883 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734002121.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:52 Heat of formation + Delta-G solvation = -20.608777 kcal Electronic energy + Delta-G solvation = -23236.592805 eV Core-core repulsion = 20025.687754 eV Total energy + Delta-G solvation = -3210.905051 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17227 -40.36238 -38.25866 -35.60318 -34.33555 -34.12214 -31.80694 -31.35861 -29.04628 -28.01005 -27.08396 -25.02153 -24.19355 -23.54382 -22.21836 -20.98352 -20.07367 -19.82776 -18.80361 -17.09930 -16.92049 -16.52773 -16.22201 -16.04881 -15.54782 -15.49888 -15.39055 -14.96024 -14.72722 -14.38268 -14.17147 -14.08266 -13.60020 -13.53351 -13.13492 -13.05960 -12.95995 -12.59476 -12.46990 -12.35445 -12.26388 -12.14880 -12.13013 -11.66077 -11.48105 -11.40059 -11.22190 -11.17823 -11.05578 -10.76000 -9.74183 -9.03688 -8.82944 -8.46448 -6.14469 0.61869 0.70811 1.35021 1.45916 1.51415 2.18643 2.75984 3.05544 3.33815 3.52643 3.84996 3.91209 4.04563 4.10403 4.11990 4.20424 4.24548 4.27486 4.41736 4.46562 4.56377 4.61594 4.62965 4.70919 4.78623 4.82522 4.93038 4.98763 5.00720 5.05222 5.11666 5.16218 5.19169 5.24069 5.28249 5.33013 5.35222 5.42323 5.52763 5.59031 5.61905 5.74164 5.85315 6.03753 6.22702 6.36029 6.65176 6.98330 7.79864 8.76852 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025273 B = 0.003324 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.643667 B = 8422.190560 C = 8500.364538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.093 3.907 3 H 0.048 0.952 4 C -0.112 4.112 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.116 4.116 8 C 0.074 3.926 9 N -0.552 5.552 10 C 0.112 3.888 11 C -0.152 4.152 12 C -0.061 4.061 13 C -0.205 4.205 14 C 0.113 3.887 15 O -0.234 6.234 16 C -0.413 4.413 17 H 0.100 0.900 18 C -0.023 4.023 19 N -0.922 5.922 20 Si 1.018 2.982 21 H -0.257 1.257 22 H -0.271 1.271 23 H -0.258 1.258 24 C -0.243 4.243 25 C -0.047 4.047 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.018 0.982 39 H 0.101 0.899 40 H 0.042 0.958 41 H 0.139 0.861 42 H 0.110 0.890 43 H 0.273 0.727 44 H 0.116 0.884 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.910 13.542 19.693 24.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 H 0.066 0.934 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.154 4.154 7 C -0.154 4.154 8 C -0.056 4.056 9 N -0.277 5.277 10 C -0.014 4.014 11 C -0.153 4.153 12 C -0.080 4.080 13 C -0.224 4.224 14 C 0.063 3.937 15 O -0.141 6.141 16 C -0.489 4.489 17 H 0.117 0.883 18 C -0.220 4.220 19 N -0.560 5.560 20 Si 0.837 3.163 21 H -0.181 1.181 22 H -0.196 1.196 23 H -0.182 1.182 24 C -0.262 4.262 25 C -0.066 4.066 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.036 0.964 39 H 0.119 0.881 40 H 0.060 0.940 41 H 0.157 0.843 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.134 0.866 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.628 13.033 19.476 23.714 hybrid contribution 0.172 -0.245 -0.867 0.917 sum -3.457 12.788 18.609 22.843 Atomic orbital electron populations 1.22110 0.93663 1.02519 1.02725 1.21356 0.95323 0.95268 0.89402 0.93428 1.21463 0.97084 1.00078 0.96369 1.21898 0.95328 1.00773 0.97235 1.21395 0.99782 0.98216 0.95990 1.21454 0.98031 0.99870 0.96033 1.20940 0.89002 0.97297 0.98341 1.58858 1.02070 1.61158 1.05656 1.20994 0.97388 0.94913 0.88120 1.19648 1.02909 0.95311 0.97398 1.20843 0.96189 0.98455 0.92500 1.20397 1.07775 0.91297 1.02962 1.19924 0.94151 0.90824 0.88775 1.83948 1.62980 1.23064 1.44085 1.21764 1.21387 0.86875 1.18916 0.88258 1.26590 0.97145 1.03712 0.94600 1.70184 1.31529 1.35899 1.18420 0.84661 0.78435 0.74253 0.78952 1.18099 1.19580 1.18187 1.21252 1.06353 1.01264 0.97313 1.20842 0.97275 0.92298 0.96178 0.91974 0.90565 0.92087 0.90612 0.92382 0.91353 0.92125 0.92623 0.91717 0.91956 0.91745 0.92481 0.96442 0.88112 0.93986 0.84341 0.87153 0.91854 0.86600 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 7.64 71.98 0.55 -1.68 16 2 C 0.09 1.64 2.47 44.07 0.11 1.75 16 3 H 0.05 0.84 6.66 -2.39 -0.02 0.82 16 4 C -0.11 -1.87 4.98 30.16 0.15 -1.72 16 5 C -0.11 -1.73 5.91 31.26 0.18 -1.54 16 6 C -0.12 -1.97 5.32 30.28 0.16 -1.80 16 7 C -0.12 -2.49 5.64 30.37 0.17 -2.31 16 8 C 0.07 1.77 4.77 88.07 0.42 2.19 16 9 N -0.55 -12.62 3.93 -892.41 -3.50 -16.12 16 10 C 0.11 2.65 4.29 85.56 0.37 3.02 16 11 C -0.15 -4.81 4.60 -19.83 -0.09 -4.90 16 12 C -0.06 -2.11 8.21 22.25 0.18 -1.92 16 13 C -0.21 -8.96 9.99 22.39 0.22 -8.73 16 14 C 0.11 5.80 6.65 22.58 0.15 5.95 16 15 O -0.23 -14.42 9.76 -22.84 -0.22 -14.65 16 16 C -0.41 -24.57 9.44 67.92 0.64 -23.93 16 17 H 0.10 5.43 5.30 -2.91 -0.02 5.41 16 18 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 19 N -0.92 -57.51 13.67 21.61 0.30 -57.21 16 20 Si 1.02 43.48 29.55 68.60 2.03 45.50 16 21 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 23 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 24 C -0.24 -10.86 9.13 22.39 0.20 -10.66 16 25 C -0.05 -1.69 9.72 22.25 0.22 -1.47 16 26 H 0.06 0.99 7.68 -2.39 -0.02 0.98 16 27 H 0.08 0.86 8.00 -2.38 -0.02 0.84 16 28 H 0.06 0.86 6.84 -2.39 -0.02 0.85 16 29 H 0.08 1.04 7.62 -2.38 -0.02 1.02 16 30 H 0.06 1.21 7.25 -2.39 -0.02 1.20 16 31 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 0.94 6.58 -2.39 -0.02 0.92 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 1.49 7.10 -2.39 -0.02 1.48 16 36 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.06 1.66 5.70 -2.39 -0.01 1.64 16 38 H 0.02 0.40 7.54 -2.39 -0.02 0.38 16 39 H 0.10 2.11 5.35 -2.39 -0.01 2.09 16 40 H 0.04 0.92 8.01 -2.39 -0.02 0.91 16 41 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 42 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 43 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 44 H 0.12 5.30 5.72 -2.91 -0.02 5.29 16 45 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -69.16 342.89 3.67 -65.48 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.97 Total: 25.63 kcal Atomic # 6 Polarization: -52.75 SS G_CDS: 4.11 Total: -48.64 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -3.21 Total: -73.33 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.22 Total: -14.65 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -69.16 3.67 -65.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734002121.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.875 kcal (2) G-P(sol) polarization free energy of solvation -69.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds