Wall clock time and date at job start Tue Mar 31 2020 06:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 108.89466 * 2 1 4 4 C 1.54076 * 108.97967 * 241.24073 * 2 1 3 5 5 C 1.54291 * 112.28784 * 198.26970 * 4 2 1 6 6 C 1.50461 * 113.03344 * 318.29795 * 5 4 2 7 7 C 1.54509 * 108.85413 * 92.15267 * 6 5 4 8 8 C 1.45855 * 111.59497 * 282.80852 * 7 6 5 9 9 N 1.44267 * 108.98383 * 118.76625 * 2 1 3 10 10 C 1.46905 * 110.99556 * 339.95312 * 9 2 1 11 11 C 1.50707 * 109.46650 * 173.33335 * 10 9 2 12 12 C 1.38298 * 119.92511 * 95.94384 * 11 10 9 13 13 C 1.38104 * 120.06686 * 179.97438 * 12 11 10 14 14 C 1.38884 * 119.92890 * 0.02562 * 13 12 11 15 15 O 1.35746 * 120.06839 * 180.02562 * 14 13 12 16 16 C 1.34834 * 117.00045 * 5.67858 * 15 14 13 17 17 H 1.07995 * 119.99894 * 354.92625 * 16 15 14 18 18 C 1.38660 * 119.99965 * 174.93010 * 16 15 14 19 19 N 1.31555 * 119.99930 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99905 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47152 * 269.99861 * 20 18 16 22 22 H 1.48499 * 109.46962 * 29.99984 * 20 18 16 23 23 H 1.48504 * 109.47069 * 149.99838 * 20 18 16 24 24 C 1.38874 * 119.86150 * 0.27839 * 14 13 12 25 25 C 1.38100 * 119.93105 * 359.45008 * 24 14 13 26 26 H 1.08995 * 109.47228 * 305.97925 * 1 2 3 27 27 H 1.08997 * 109.47394 * 65.97978 * 1 2 3 28 28 H 1.09001 * 109.47172 * 185.98046 * 1 2 3 29 29 H 1.08998 * 108.91652 * 77.54319 * 4 2 1 30 30 H 1.08999 * 108.83892 * 318.94216 * 4 2 1 31 31 H 1.08996 * 108.76740 * 197.38206 * 5 4 2 32 32 H 1.08999 * 108.67937 * 79.14944 * 5 4 2 33 33 H 1.08997 * 109.57418 * 332.34816 * 6 5 4 34 34 H 1.08998 * 109.67792 * 212.02612 * 6 5 4 35 35 H 1.08999 * 109.05904 * 162.25916 * 7 6 5 36 36 H 1.09005 * 109.05121 * 43.35189 * 7 6 5 37 37 H 1.08997 * 108.79411 * 300.43939 * 8 7 6 38 38 H 1.09003 * 108.70747 * 182.14918 * 8 7 6 39 39 H 1.08994 * 109.46914 * 53.33825 * 10 9 2 40 40 H 1.08997 * 109.46908 * 293.33452 * 10 9 2 41 41 H 1.07998 * 119.97433 * 359.97438 * 12 11 10 42 42 H 1.08002 * 120.03697 * 180.02562 * 13 12 11 43 43 H 0.96999 * 119.99919 * 179.97438 * 19 18 16 44 44 H 1.08003 * 120.03551 * 179.72272 * 24 14 13 45 45 H 1.08000 * 119.96852 * 180.27560 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8829 1.0313 0.0000 4 6 2.0310 -0.7010 -1.2773 5 6 3.5033 -1.1474 -1.1605 6 6 4.3791 -0.1201 -0.4962 7 6 4.4282 -0.4113 1.0204 8 6 3.2108 0.0300 1.6914 9 7 1.9992 -0.6565 1.1958 10 6 0.9521 -0.6856 2.2258 11 6 1.4185 -1.5174 3.3928 12 6 1.9945 -0.9044 4.4905 13 6 2.4224 -1.6638 5.5618 14 6 2.2742 -3.0445 5.5355 15 8 2.6933 -3.7936 6.5871 16 6 3.1362 -3.1295 7.6739 17 1 3.2233 -2.0533 7.6507 18 6 3.4798 -3.8284 8.8211 19 7 3.3732 -5.1393 8.8494 20 14 4.0940 -2.9085 10.3264 21 1 5.5721 -2.7817 10.2601 22 1 3.4823 -1.5559 10.3635 23 1 3.7158 -3.6566 11.5522 24 6 1.7012 -3.6575 4.4290 25 6 1.2702 -2.8921 3.3634 26 1 -0.3633 0.6037 0.8316 27 1 -0.3634 0.4183 -0.9386 28 1 -0.3633 -1.0221 0.1071 29 1 1.9356 -0.0139 -2.1180 30 1 1.4099 -1.5769 -1.4648 31 1 3.8903 -1.3446 -2.1602 32 1 3.5435 -2.0699 -0.5812 33 1 3.9665 0.8748 -0.6637 34 1 5.3858 -0.1725 -0.9109 35 1 5.2824 0.1079 1.4550 36 1 4.5500 -1.4837 1.1730 37 1 3.0942 1.1027 1.5377 38 1 3.3111 -0.1622 2.7597 39 1 0.0443 -1.1215 1.8087 40 1 0.7459 0.3302 2.5630 41 1 2.1098 0.1692 4.5102 42 1 2.8717 -1.1845 6.4190 43 1 3.6140 -5.6282 9.6518 44 1 1.5887 -4.7314 4.4037 45 1 0.8204 -3.3679 2.5044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734002123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:54 Heat of formation + Delta-G solvation = -1.065574 kcal Electronic energy + Delta-G solvation = -23343.684220 eV Core-core repulsion = 20133.626626 eV Total energy + Delta-G solvation = -3210.057594 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.92622 -38.76578 -36.58382 -34.70640 -33.24091 -32.25184 -30.15569 -30.03494 -28.14880 -26.75580 -25.44045 -24.01714 -22.76780 -21.91754 -20.77256 -20.07352 -19.10266 -17.94006 -16.94768 -16.06823 -15.84581 -15.29882 -14.72896 -14.52660 -14.25242 -14.11290 -13.77670 -13.56312 -13.42054 -12.92348 -12.89329 -12.68514 -12.60699 -12.23040 -12.02685 -11.97268 -11.61836 -11.33853 -11.27974 -10.93132 -10.83527 -10.70235 -10.61722 -10.46963 -10.42190 -10.35282 -10.33407 -10.12090 -9.30568 -8.80845 -8.13852 -8.09214 -7.13241 -6.43260 -4.02044 2.25581 2.33015 3.13180 3.14155 3.18946 3.97846 4.01311 4.62156 4.72957 4.80803 4.89498 5.10569 5.13367 5.20633 5.22633 5.28566 5.32344 5.35713 5.46424 5.51899 5.62864 5.65865 5.70794 5.77241 5.81490 5.83017 5.96275 5.98405 6.04283 6.09389 6.21964 6.24585 6.25994 6.34267 6.38865 6.44717 6.51012 6.75283 6.93971 7.06589 7.23284 7.27239 7.41577 7.45251 7.48707 7.87260 8.01965 9.02521 9.73649 10.74924 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026789 B = 0.003439 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.957832 B = 8138.874094 C = 8413.433046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.081 3.919 3 H 0.042 0.958 4 C -0.101 4.101 5 C -0.110 4.110 6 C -0.114 4.114 7 C -0.114 4.114 8 C 0.050 3.950 9 N -0.517 5.517 10 C 0.107 3.893 11 C -0.177 4.177 12 C -0.068 4.068 13 C -0.234 4.234 14 C 0.155 3.845 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.268 1.268 23 H -0.277 1.277 24 C -0.194 4.194 25 C -0.051 4.051 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.026 0.974 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.029 0.971 41 H 0.101 0.899 42 H 0.125 0.875 43 H 0.270 0.730 44 H 0.115 0.885 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.343 10.911 -16.757 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.028 4.028 3 H 0.060 0.940 4 C -0.140 4.140 5 C -0.148 4.148 6 C -0.152 4.152 7 C -0.152 4.152 8 C -0.077 4.077 9 N -0.241 5.241 10 C -0.019 4.019 11 C -0.179 4.179 12 C -0.087 4.087 13 C -0.254 4.254 14 C 0.102 3.898 15 O -0.083 6.083 16 C -0.468 4.468 17 H 0.108 0.892 18 C -0.165 4.165 19 N -0.498 5.498 20 Si 0.765 3.235 21 H -0.199 1.199 22 H -0.192 1.192 23 H -0.203 1.203 24 C -0.214 4.214 25 C -0.069 4.069 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.044 0.956 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.048 0.952 41 H 0.120 0.880 42 H 0.142 0.858 43 H 0.079 0.921 44 H 0.133 0.867 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.179 9.984 -16.662 19.546 hybrid contribution 0.183 1.362 0.997 1.698 sum -1.996 11.346 -15.666 19.446 Atomic orbital electron populations 1.22287 0.95618 1.02512 1.01615 1.21465 0.94093 0.95772 0.91511 0.94032 1.21960 0.96372 0.99949 0.95702 1.21188 0.94170 0.99803 0.99606 1.21334 0.99084 0.99050 0.95721 1.20589 0.96958 1.02719 0.94969 1.21056 0.90760 0.94899 1.00965 1.61744 1.05315 1.52994 1.04071 1.21053 0.94046 0.96928 0.89903 1.19132 1.08818 0.93910 0.96009 1.20589 0.97045 0.97910 0.93143 1.21109 1.09522 0.93909 1.00826 1.19393 0.91345 0.90124 0.88976 1.83980 1.69571 1.33814 1.20897 1.21313 1.44028 0.92333 0.89102 0.89151 1.25276 0.97129 0.95816 0.98291 1.70038 1.44740 1.06007 1.29047 0.85729 0.79069 0.78962 0.79769 1.19899 1.19235 1.20260 1.20221 1.07192 0.99650 0.94292 1.20424 0.97560 0.92747 0.96219 0.92372 0.92666 0.91424 0.92848 0.92042 0.93376 0.91227 0.92638 0.92487 0.92148 0.91009 0.95553 0.90076 0.89907 0.95238 0.88045 0.85753 0.92057 0.86668 0.87132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 7.66 37.15 0.28 -1.25 16 2 C 0.08 0.87 2.37 -68.56 -0.16 0.70 16 3 H 0.04 0.45 6.51 -51.93 -0.34 0.12 16 4 C -0.10 -1.00 5.52 -25.49 -0.14 -1.15 16 5 C -0.11 -1.14 5.42 -27.32 -0.15 -1.29 16 6 C -0.11 -1.17 5.60 -27.21 -0.15 -1.33 16 7 C -0.11 -1.37 5.53 -29.32 -0.16 -1.53 16 8 C 0.05 0.65 4.78 -6.71 -0.03 0.62 16 9 N -0.52 -6.61 4.23 -232.87 -0.98 -7.59 16 10 C 0.11 1.45 3.83 -4.97 -0.02 1.43 16 11 C -0.18 -3.00 4.79 -104.57 -0.50 -3.50 16 12 C -0.07 -1.24 7.93 -39.61 -0.31 -1.55 16 13 C -0.23 -5.09 9.17 -39.39 -0.36 -5.45 16 14 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 15 O -0.18 -5.16 9.76 0.05 0.00 -5.16 16 16 C -0.39 -11.01 9.49 30.89 0.29 -10.72 16 17 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 18 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 19 N -0.86 -25.47 13.67 55.48 0.76 -24.71 16 20 Si 0.94 20.61 29.55 -169.99 -5.02 15.59 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 24 C -0.19 -4.15 9.99 -39.40 -0.39 -4.54 16 25 C -0.05 -0.92 9.72 -39.61 -0.38 -1.30 16 26 H 0.06 0.55 6.81 -51.93 -0.35 0.20 16 27 H 0.05 0.44 8.13 -51.93 -0.42 0.02 16 28 H 0.07 0.66 7.00 -51.93 -0.36 0.30 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.62 7.97 -51.93 -0.41 0.20 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.85 7.38 -51.93 -0.38 0.46 16 33 H 0.05 0.56 7.15 -51.93 -0.37 0.18 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.98 7.59 -51.93 -0.39 0.58 16 37 H 0.03 0.32 7.24 -51.93 -0.38 -0.06 16 38 H 0.08 1.20 5.12 -51.93 -0.27 0.93 16 39 H 0.08 1.04 5.63 -51.93 -0.29 0.75 16 40 H 0.03 0.39 7.62 -51.93 -0.40 -0.01 16 41 H 0.10 1.60 7.86 -52.49 -0.41 1.19 16 42 H 0.12 2.72 5.64 -52.49 -0.30 2.43 16 43 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.12 2.40 8.06 -52.48 -0.42 1.97 16 45 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 342.31 15.07 5.16 5.16 Total: -1.00 -29.61 342.31 -9.66 -39.28 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.02 Total: 3.80 kcal Atomic # 6 Polarization: -23.81 SS G_CDS: -2.55 Total: -26.36 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: -0.23 Total: -32.31 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.00 Total: -5.16 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.61 -9.66 -39.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734002123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.211 kcal (2) G-P(sol) polarization free energy of solvation -29.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds