Wall clock time and date at job start Tue Mar 31 2020 06:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09006 * 108.89466 * 2 1 4 4 C 1.54076 * 108.97967 * 241.24073 * 2 1 3 5 5 C 1.54291 * 112.28784 * 198.26970 * 4 2 1 6 6 C 1.50461 * 113.03344 * 318.29795 * 5 4 2 7 7 C 1.54509 * 108.85413 * 92.15267 * 6 5 4 8 8 C 1.45855 * 111.59497 * 282.80852 * 7 6 5 9 9 N 1.44267 * 108.98383 * 118.76625 * 2 1 3 10 10 C 1.46905 * 110.99556 * 339.95312 * 9 2 1 11 11 C 1.50707 * 109.46650 * 173.33335 * 10 9 2 12 12 C 1.38298 * 119.92511 * 95.94384 * 11 10 9 13 13 C 1.38104 * 120.06686 * 179.97438 * 12 11 10 14 14 C 1.38884 * 119.92890 * 0.02562 * 13 12 11 15 15 O 1.35746 * 120.06839 * 180.02562 * 14 13 12 16 16 C 1.34834 * 117.00045 * 5.67858 * 15 14 13 17 17 H 1.07995 * 119.99894 * 354.92625 * 16 15 14 18 18 C 1.38660 * 119.99965 * 174.93010 * 16 15 14 19 19 N 1.31555 * 119.99930 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99905 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47152 * 269.99861 * 20 18 16 22 22 H 1.48499 * 109.46962 * 29.99984 * 20 18 16 23 23 H 1.48504 * 109.47069 * 149.99838 * 20 18 16 24 24 C 1.38874 * 119.86150 * 0.27839 * 14 13 12 25 25 C 1.38100 * 119.93105 * 359.45008 * 24 14 13 26 26 H 1.08995 * 109.47228 * 305.97925 * 1 2 3 27 27 H 1.08997 * 109.47394 * 65.97978 * 1 2 3 28 28 H 1.09001 * 109.47172 * 185.98046 * 1 2 3 29 29 H 1.08998 * 108.91652 * 77.54319 * 4 2 1 30 30 H 1.08999 * 108.83892 * 318.94216 * 4 2 1 31 31 H 1.08996 * 108.76740 * 197.38206 * 5 4 2 32 32 H 1.08999 * 108.67937 * 79.14944 * 5 4 2 33 33 H 1.08997 * 109.57418 * 332.34816 * 6 5 4 34 34 H 1.08998 * 109.67792 * 212.02612 * 6 5 4 35 35 H 1.08999 * 109.05904 * 162.25916 * 7 6 5 36 36 H 1.09005 * 109.05121 * 43.35189 * 7 6 5 37 37 H 1.08997 * 108.79411 * 300.43939 * 8 7 6 38 38 H 1.09003 * 108.70747 * 182.14918 * 8 7 6 39 39 H 1.08994 * 109.46914 * 53.33825 * 10 9 2 40 40 H 1.08997 * 109.46908 * 293.33452 * 10 9 2 41 41 H 1.07998 * 119.97433 * 359.97438 * 12 11 10 42 42 H 1.08002 * 120.03697 * 180.02562 * 13 12 11 43 43 H 0.96999 * 119.99919 * 179.97438 * 19 18 16 44 44 H 1.08003 * 120.03551 * 179.72272 * 24 14 13 45 45 H 1.08000 * 119.96852 * 180.27560 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8829 1.0313 0.0000 4 6 2.0310 -0.7010 -1.2773 5 6 3.5033 -1.1474 -1.1605 6 6 4.3791 -0.1201 -0.4962 7 6 4.4282 -0.4113 1.0204 8 6 3.2108 0.0300 1.6914 9 7 1.9992 -0.6565 1.1958 10 6 0.9521 -0.6856 2.2258 11 6 1.4185 -1.5174 3.3928 12 6 1.9945 -0.9044 4.4905 13 6 2.4224 -1.6638 5.5618 14 6 2.2742 -3.0445 5.5355 15 8 2.6933 -3.7936 6.5871 16 6 3.1362 -3.1295 7.6739 17 1 3.2233 -2.0533 7.6507 18 6 3.4798 -3.8284 8.8211 19 7 3.3732 -5.1393 8.8494 20 14 4.0940 -2.9085 10.3264 21 1 5.5721 -2.7817 10.2601 22 1 3.4823 -1.5559 10.3635 23 1 3.7158 -3.6566 11.5522 24 6 1.7012 -3.6575 4.4290 25 6 1.2702 -2.8921 3.3634 26 1 -0.3633 0.6037 0.8316 27 1 -0.3634 0.4183 -0.9386 28 1 -0.3633 -1.0221 0.1071 29 1 1.9356 -0.0139 -2.1180 30 1 1.4099 -1.5769 -1.4648 31 1 3.8903 -1.3446 -2.1602 32 1 3.5435 -2.0699 -0.5812 33 1 3.9665 0.8748 -0.6637 34 1 5.3858 -0.1725 -0.9109 35 1 5.2824 0.1079 1.4550 36 1 4.5500 -1.4837 1.1730 37 1 3.0942 1.1027 1.5377 38 1 3.3111 -0.1622 2.7597 39 1 0.0443 -1.1215 1.8087 40 1 0.7459 0.3302 2.5630 41 1 2.1098 0.1692 4.5102 42 1 2.8717 -1.1845 6.4190 43 1 3.6140 -5.6282 9.6518 44 1 1.5887 -4.7314 4.4037 45 1 0.8204 -3.3679 2.5044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734002123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:54 Heat of formation + Delta-G solvation = -17.784827 kcal Electronic energy + Delta-G solvation = -23344.409222 eV Core-core repulsion = 20133.626626 eV Total energy + Delta-G solvation = -3210.782596 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.12427 -40.31367 -38.22881 -35.70803 -34.39800 -34.02145 -31.77766 -31.44630 -29.04131 -27.97761 -27.24774 -25.21444 -23.81188 -23.45309 -22.13364 -21.22657 -19.99451 -19.79698 -18.79917 -17.10824 -16.89867 -16.44357 -16.35586 -16.02950 -15.59876 -15.48943 -15.26768 -14.93258 -14.64585 -14.40634 -14.17482 -13.80491 -13.59927 -13.56358 -13.36636 -13.06441 -12.96908 -12.75186 -12.45596 -12.34888 -12.17267 -12.13857 -11.98334 -11.58018 -11.48639 -11.38925 -11.22701 -11.15778 -11.03250 -10.76556 -9.73374 -9.11054 -8.85769 -8.46696 -6.14816 0.61901 0.70655 1.34405 1.43789 1.52056 2.17840 2.76213 3.04614 3.30434 3.54293 3.85030 3.95615 4.01998 4.06743 4.12159 4.22731 4.31394 4.36382 4.40355 4.43458 4.56338 4.59525 4.63550 4.73098 4.81108 4.83878 4.90673 4.95922 5.01231 5.05213 5.10763 5.16110 5.24612 5.28197 5.32395 5.35427 5.42785 5.46182 5.52323 5.59971 5.62386 5.72798 5.84091 6.03736 6.22781 6.27180 6.45724 6.98053 7.79966 8.76775 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.026789 B = 0.003439 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.957832 B = 8138.874094 C = 8413.433046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.079 3.921 3 H 0.046 0.954 4 C -0.100 4.100 5 C -0.110 4.110 6 C -0.108 4.108 7 C -0.115 4.115 8 C 0.051 3.949 9 N -0.526 5.526 10 C 0.110 3.890 11 C -0.150 4.150 12 C -0.063 4.063 13 C -0.242 4.242 14 C 0.114 3.886 15 O -0.234 6.234 16 C -0.413 4.413 17 H 0.101 0.899 18 C -0.023 4.023 19 N -0.922 5.922 20 Si 1.018 2.982 21 H -0.263 1.263 22 H -0.253 1.253 23 H -0.271 1.271 24 C -0.206 4.206 25 C -0.046 4.046 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.048 0.952 37 H 0.040 0.960 38 H 0.059 0.941 39 H 0.101 0.899 40 H 0.044 0.956 41 H 0.133 0.867 42 H 0.116 0.884 43 H 0.272 0.728 44 H 0.110 0.890 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.097 13.951 -19.066 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.030 4.030 3 H 0.064 0.936 4 C -0.138 4.138 5 C -0.148 4.148 6 C -0.146 4.146 7 C -0.153 4.153 8 C -0.076 4.076 9 N -0.251 5.251 10 C -0.017 4.017 11 C -0.151 4.151 12 C -0.082 4.082 13 C -0.261 4.261 14 C 0.063 3.937 15 O -0.141 6.141 16 C -0.490 4.490 17 H 0.118 0.882 18 C -0.221 4.221 19 N -0.560 5.560 20 Si 0.837 3.163 21 H -0.188 1.188 22 H -0.177 1.177 23 H -0.195 1.195 24 C -0.225 4.225 25 C -0.064 4.064 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.119 0.881 40 H 0.062 0.938 41 H 0.151 0.849 42 H 0.134 0.866 43 H 0.081 0.919 44 H 0.128 0.872 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.951 13.058 -19.032 23.269 hybrid contribution 0.318 0.539 1.349 1.488 sum -2.633 13.597 -17.683 22.461 Atomic orbital electron populations 1.22261 0.94390 1.02492 1.02684 1.21545 0.95120 0.95758 0.90549 0.93604 1.21964 0.95663 1.00265 0.95902 1.21179 0.94925 0.98798 0.99865 1.21289 0.99742 0.99380 0.94147 1.20573 0.96955 1.01200 0.96543 1.21046 0.91166 0.95754 0.99651 1.61693 1.05014 1.53899 1.04477 1.21089 0.94742 0.97019 0.88803 1.19643 1.05167 0.93852 0.96460 1.20906 0.95856 0.99282 0.92120 1.21196 1.09892 0.93165 1.01873 1.19917 0.93223 0.91458 0.89067 1.83941 1.72381 1.35485 1.22302 1.21811 1.44399 0.93043 0.89708 0.88219 1.26587 0.97117 0.96782 1.01569 1.70187 1.47407 1.08084 1.30312 0.84596 0.78761 0.77945 0.74962 1.18804 1.17660 1.19536 1.20453 1.07441 0.99976 0.94635 1.20777 0.96506 0.93277 0.95846 0.92186 0.91036 0.91736 0.91049 0.92230 0.92188 0.93512 0.91720 0.91628 0.91607 0.93361 0.94194 0.92245 0.88123 0.93791 0.84927 0.86605 0.91861 0.87217 0.84050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 7.66 71.98 0.55 -1.79 16 2 C 0.08 1.38 2.37 45.77 0.11 1.49 16 3 H 0.05 0.80 6.51 -2.38 -0.02 0.78 16 4 C -0.10 -1.62 5.52 31.40 0.17 -1.45 16 5 C -0.11 -2.01 5.42 30.21 0.16 -1.85 16 6 C -0.11 -1.93 5.60 30.29 0.17 -1.76 16 7 C -0.11 -2.56 5.53 28.92 0.16 -2.40 16 8 C 0.05 1.18 4.78 83.94 0.40 1.59 16 9 N -0.53 -11.76 4.23 -890.65 -3.76 -15.52 16 10 C 0.11 2.56 3.83 85.56 0.33 2.88 16 11 C -0.15 -4.72 4.79 -19.83 -0.10 -4.81 16 12 C -0.06 -2.19 7.93 22.25 0.18 -2.02 16 13 C -0.24 -10.71 9.17 22.39 0.21 -10.51 16 14 C 0.11 5.79 6.65 22.58 0.15 5.94 16 15 O -0.23 -14.43 9.76 -22.75 -0.22 -14.65 16 16 C -0.41 -24.52 9.49 67.92 0.64 -23.87 16 17 H 0.10 5.43 5.20 -2.91 -0.02 5.42 16 18 C -0.02 -1.34 5.49 84.84 0.47 -0.88 16 19 N -0.92 -57.39 13.67 21.61 0.30 -57.10 16 20 Si 1.02 43.39 29.55 68.60 2.03 45.41 16 21 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 22 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 23 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 24 C -0.21 -9.04 9.99 22.39 0.22 -8.82 16 25 C -0.05 -1.58 9.72 22.25 0.22 -1.37 16 26 H 0.06 0.86 6.81 -2.39 -0.02 0.84 16 27 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 28 H 0.06 0.99 7.00 -2.39 -0.02 0.98 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 1.00 7.97 -2.39 -0.02 0.98 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 1.07 7.38 -2.39 -0.02 1.05 16 33 H 0.06 1.06 7.15 -2.39 -0.02 1.04 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.29 7.59 -2.38 -0.02 1.27 16 37 H 0.04 0.83 7.24 -2.39 -0.02 0.81 16 38 H 0.06 1.62 5.12 -2.39 -0.01 1.61 16 39 H 0.10 2.07 5.63 -2.39 -0.01 2.06 16 40 H 0.04 0.94 7.62 -2.39 -0.02 0.92 16 41 H 0.13 3.79 7.86 -2.91 -0.02 3.77 16 42 H 0.12 5.24 5.64 -2.91 -0.02 5.22 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 45 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -69.05 342.31 3.35 -65.70 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.97 Total: 25.77 kcal Atomic # 6 Polarization: -53.66 SS G_CDS: 4.04 Total: -49.61 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -3.47 Total: -72.62 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.22 Total: -14.65 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -69.05 3.35 -65.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734002123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.918 kcal (2) G-P(sol) polarization free energy of solvation -69.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds