Wall clock time and date at job start Tue Mar 31 2020 06:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47185 * 2 1 4 4 N 1.46896 * 109.47181 * 119.99599 * 2 1 3 5 5 C 1.46907 * 111.00063 * 62.80814 * 4 2 1 6 6 C 1.50706 * 109.47028 * 61.80124 * 5 4 2 7 7 C 1.38298 * 119.92972 * 269.59910 * 6 5 4 8 8 C 1.38102 * 120.06803 * 179.72555 * 7 6 5 9 9 C 1.38873 * 119.92645 * 0.56855 * 8 7 6 10 10 O 1.35754 * 120.06498 * 179.68522 * 9 8 7 11 11 C 1.34832 * 116.99678 * 185.66764 * 10 9 8 12 12 H 1.08001 * 120.00543 * 5.40534 * 11 10 9 13 13 C 1.38662 * 119.99915 * 185.40504 * 11 10 9 14 14 N 1.31557 * 119.99647 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 119.99755 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47225 * 90.00239 * 15 13 11 17 17 H 1.48507 * 109.46784 * 209.99810 * 15 13 11 18 18 H 1.48494 * 109.47219 * 329.99863 * 15 13 11 19 19 C 1.38876 * 119.86430 * 359.70091 * 9 8 7 20 20 C 1.38100 * 119.93239 * 0.02562 * 19 9 8 21 21 C 1.46902 * 111.00249 * 186.75767 * 4 2 1 22 22 C 1.53786 * 113.61541 * 180.02562 * 21 4 2 23 23 C 1.53777 * 87.07920 * 219.94037 * 22 21 4 24 24 C 1.53773 * 87.08670 * 25.43423 * 23 22 21 25 25 H 1.08997 * 109.46763 * 302.64361 * 1 2 3 26 26 H 1.09004 * 109.46714 * 62.63888 * 1 2 3 27 27 H 1.08994 * 109.46879 * 182.64289 * 1 2 3 28 28 H 1.09002 * 109.47188 * 239.99680 * 2 1 3 29 29 H 1.08999 * 109.46921 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46732 * 299.99514 * 3 2 1 31 31 H 1.08989 * 109.47161 * 60.00024 * 3 2 1 32 32 H 1.08999 * 109.47153 * 181.80318 * 5 4 2 33 33 H 1.09002 * 109.46630 * 301.80398 * 5 4 2 34 34 H 1.08005 * 119.96946 * 359.97438 * 7 6 5 35 35 H 1.08006 * 120.03520 * 180.26885 * 8 7 6 36 36 H 0.97000 * 119.99029 * 180.02562 * 14 13 11 37 37 H 1.08004 * 120.03424 * 179.97438 * 19 9 8 38 38 H 1.07996 * 119.96400 * 179.97438 * 20 19 9 39 39 H 1.08995 * 112.85208 * 311.20241 * 21 4 2 40 40 H 1.08999 * 113.61133 * 105.38971 * 22 21 4 41 41 H 1.09004 * 113.68999 * 334.50135 * 22 21 4 42 42 H 1.08997 * 113.61491 * 139.98976 * 23 22 21 43 43 H 1.09003 * 113.61292 * 270.88060 * 23 22 21 44 44 H 1.09001 * 113.61754 * 89.11194 * 24 23 22 45 45 H 1.09003 * 113.61828 * 220.02649 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.6043 -2.1015 1.2004 6 6 2.1998 -2.8015 0.0060 7 6 1.5020 -2.8447 -1.1873 8 6 2.0475 -3.4805 -2.2852 9 6 3.2928 -4.0871 -2.1867 10 8 3.8288 -4.7184 -3.2623 11 6 4.9840 -5.3859 -3.0674 12 1 5.3951 -5.4749 -2.0727 13 6 5.6443 -5.9581 -4.1441 14 7 6.7717 -6.6089 -3.9540 15 14 4.9329 -5.8048 -5.8645 16 1 5.4619 -4.5772 -6.5113 17 1 5.3190 -6.9930 -6.6674 18 1 3.4525 -5.7225 -5.7825 19 6 3.9885 -4.0469 -0.9854 20 6 3.4402 -3.4046 0.1073 21 6 3.4792 -0.5738 1.3169 22 6 4.0570 -1.2797 2.5549 23 6 5.0016 -0.0753 2.7035 24 6 3.9426 0.7481 1.9516 25 1 -0.3633 0.5543 0.8653 26 1 -0.3633 0.4723 -0.9127 27 1 -0.3633 -1.0265 0.0474 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6768 1.9563 0.8899 32 1 1.9527 -2.5824 2.1144 33 1 0.5170 -2.1597 1.1509 34 1 0.5313 -2.3772 -1.2618 35 1 1.5040 -3.5101 -3.2181 36 1 7.2337 -7.0089 -4.7073 37 1 4.9571 -4.5181 -0.9056 38 1 3.9806 -3.3734 1.0418 39 1 3.9997 -0.8202 0.3915 40 1 4.5717 -2.2126 2.3251 41 1 3.3449 -1.3799 3.3742 42 1 5.1476 0.2402 3.7365 43 1 5.9383 -0.1851 2.1570 44 1 3.1983 1.2031 2.6051 45 1 4.3650 1.4521 1.2346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740886094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:22 Heat of formation + Delta-G solvation = 22.792079 kcal Electronic energy + Delta-G solvation = -23750.920356 eV Core-core repulsion = 20541.897307 eV Total energy + Delta-G solvation = -3209.023049 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.17956 -38.89228 -37.00127 -35.69481 -32.56196 -32.00623 -30.28671 -29.19127 -27.65171 -25.70753 -25.34031 -24.60510 -23.44959 -22.06719 -20.81608 -19.68037 -19.04737 -17.92380 -17.28112 -16.28849 -15.75859 -15.38433 -14.96275 -14.68769 -14.31250 -13.97962 -13.78559 -13.58526 -13.33902 -12.77677 -12.63224 -12.45380 -12.31025 -12.25036 -12.09969 -12.06907 -11.67371 -11.53401 -11.32052 -11.23484 -10.93665 -10.88388 -10.73864 -10.66774 -10.46804 -10.23782 -10.13029 -9.96916 -9.42528 -8.89533 -8.29345 -8.14794 -7.33843 -6.45194 -4.11697 2.08848 2.15927 3.19065 3.22845 3.37465 4.05644 4.20527 4.45834 4.66586 4.76458 4.84319 4.90622 4.94448 5.05108 5.06524 5.13644 5.40547 5.41776 5.49700 5.57944 5.67100 5.68306 5.71637 5.76673 5.82623 5.85694 5.89432 5.93072 5.95917 5.98659 6.09038 6.15125 6.26235 6.28467 6.31013 6.39289 6.48438 6.56040 6.75985 6.99730 7.16514 7.24255 7.28647 7.39705 7.58231 7.76172 8.00381 8.90150 9.52625 10.62493 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020127 B = 0.004265 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.827474 B = 6563.770361 C = 7196.506776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.069 3.931 3 C -0.150 4.150 4 N -0.514 5.514 5 C 0.103 3.897 6 C -0.209 4.209 7 C -0.067 4.067 8 C -0.195 4.195 9 C 0.160 3.840 10 O -0.218 6.218 11 C -0.389 4.389 12 H 0.106 0.894 13 C 0.064 3.936 14 N -0.879 5.879 15 Si 0.905 3.095 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.260 1.260 19 C -0.222 4.222 20 C -0.064 4.064 21 C 0.060 3.940 22 C -0.133 4.133 23 C -0.146 4.146 24 C -0.125 4.125 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.280 0.720 37 H 0.131 0.869 38 H 0.110 0.890 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.727 13.367 10.601 19.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.039 4.039 3 C -0.208 4.208 4 N -0.238 5.238 5 C -0.024 4.024 6 C -0.211 4.211 7 C -0.086 4.086 8 C -0.214 4.214 9 C 0.108 3.892 10 O -0.122 6.122 11 C -0.465 4.465 12 H 0.123 0.877 13 C -0.140 4.140 14 N -0.517 5.517 15 Si 0.731 3.269 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.184 1.184 19 C -0.241 4.241 20 C -0.083 4.083 21 C -0.049 4.049 22 C -0.170 4.170 23 C -0.184 4.184 24 C -0.163 4.163 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.090 0.910 37 H 0.149 0.851 38 H 0.128 0.872 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.837 13.453 10.676 19.314 hybrid contribution 0.396 -0.567 -1.515 1.666 sum -8.441 12.887 9.160 17.923 Atomic orbital electron populations 1.21874 0.94889 1.01916 1.01437 1.21630 0.95178 0.94594 0.92511 1.22063 1.01678 0.95661 1.01362 1.62776 1.10702 1.12337 1.37946 1.20990 0.99422 0.86609 0.95349 1.20017 0.97461 1.06913 0.96746 1.20559 0.98298 0.97620 0.92123 1.20204 0.95439 1.06092 0.99649 1.19150 0.92083 0.90747 0.87227 1.83588 1.38177 1.58802 1.31683 1.20757 0.97570 1.30590 0.97587 0.87714 1.24471 0.94689 0.95366 0.99445 1.69649 1.14958 1.34063 1.32983 0.86184 0.80655 0.77852 0.82239 1.19910 1.20709 1.18370 1.21281 1.02527 1.06758 0.93515 1.20774 0.94497 0.95611 0.97425 1.23049 0.87935 0.96734 0.97147 1.23050 0.98392 0.97464 0.98140 1.22763 0.97541 0.97520 1.00547 1.23134 0.97864 0.96107 0.99201 0.92319 0.92707 0.92411 0.92836 0.91960 0.92948 0.92270 0.90749 0.90645 0.87076 0.86713 0.91028 0.85113 0.87227 0.91246 0.91505 0.89629 0.91549 0.90396 0.89570 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.79 37.16 0.33 -1.18 16 2 C 0.07 0.83 2.20 -67.71 -0.15 0.68 16 3 C -0.15 -1.61 8.03 37.16 0.30 -1.31 16 4 N -0.51 -6.30 4.58 -219.16 -1.00 -7.31 16 5 C 0.10 1.34 5.04 -4.97 -0.03 1.32 16 6 C -0.21 -3.33 4.14 -104.58 -0.43 -3.76 16 7 C -0.07 -1.12 7.85 -39.61 -0.31 -1.43 16 8 C -0.19 -3.84 9.99 -39.40 -0.39 -4.23 16 9 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 10 O -0.22 -5.75 8.59 0.03 0.00 -5.75 16 11 C -0.39 -10.98 9.90 30.89 0.31 -10.67 16 12 H 0.11 3.02 5.53 -52.49 -0.29 2.73 16 13 C 0.06 1.78 5.49 -17.51 -0.10 1.69 16 14 N -0.88 -25.35 13.96 55.48 0.77 -24.57 16 15 Si 0.91 21.69 28.62 -169.99 -4.86 16.82 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.26 -6.25 7.11 56.52 0.40 -5.85 16 19 C -0.22 -4.74 9.13 -39.40 -0.36 -5.10 16 20 C -0.06 -1.14 8.29 -39.61 -0.33 -1.47 16 21 C 0.06 0.74 1.55 -66.89 -0.10 0.63 16 22 C -0.13 -1.49 6.13 -25.92 -0.16 -1.65 16 23 C -0.15 -1.48 8.08 -25.92 -0.21 -1.69 16 24 C -0.13 -1.31 5.75 -25.92 -0.15 -1.46 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.61 5.23 -51.93 -0.27 0.34 16 28 H 0.05 0.78 5.91 -51.93 -0.31 0.47 16 29 H 0.06 0.69 4.98 -51.93 -0.26 0.43 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.60 8.11 -51.94 -0.42 0.18 16 32 H 0.07 0.94 6.91 -51.93 -0.36 0.58 16 33 H 0.08 0.92 6.17 -51.93 -0.32 0.60 16 34 H 0.11 1.57 6.61 -52.48 -0.35 1.22 16 35 H 0.11 2.14 8.06 -52.48 -0.42 1.71 16 36 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.13 2.97 5.71 -52.48 -0.30 2.67 16 38 H 0.11 1.72 5.68 -52.49 -0.30 1.42 16 39 H 0.07 1.04 7.33 -51.93 -0.38 0.66 16 40 H 0.07 0.80 6.25 -51.93 -0.32 0.47 16 41 H 0.09 0.93 7.90 -51.93 -0.41 0.52 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.64 6.76 -51.93 -0.35 0.29 16 LS Contribution 338.38 15.07 5.10 5.10 Total: -1.00 -28.30 338.38 -8.77 -37.07 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -6.73 Total: 4.83 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: -2.05 Total: -26.19 kcal Atomic # 7 Polarization: -31.65 SS G_CDS: -0.23 Total: -31.88 kcal Atomic # 8 Polarization: -5.75 SS G_CDS: 0.00 Total: -5.75 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.86 Total: 16.82 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.30 -8.77 -37.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740886094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.867 kcal (2) G-P(sol) polarization free energy of solvation -28.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds