Wall clock time and date at job start Tue Mar 31 2020 06:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47185 * 2 1 4 4 N 1.46896 * 109.47181 * 119.99599 * 2 1 3 5 5 C 1.46907 * 111.00063 * 62.80814 * 4 2 1 6 6 C 1.50706 * 109.47028 * 61.80124 * 5 4 2 7 7 C 1.38298 * 119.92972 * 269.59910 * 6 5 4 8 8 C 1.38102 * 120.06803 * 179.72555 * 7 6 5 9 9 C 1.38873 * 119.92645 * 0.56855 * 8 7 6 10 10 O 1.35754 * 120.06498 * 179.68522 * 9 8 7 11 11 C 1.34832 * 116.99678 * 185.66764 * 10 9 8 12 12 H 1.08001 * 120.00543 * 5.40534 * 11 10 9 13 13 C 1.38662 * 119.99915 * 185.40504 * 11 10 9 14 14 N 1.31557 * 119.99647 * 179.97438 * 13 11 10 15 15 Si 1.86795 * 119.99755 * 359.97438 * 13 11 10 16 16 H 1.48501 * 109.47225 * 90.00239 * 15 13 11 17 17 H 1.48507 * 109.46784 * 209.99810 * 15 13 11 18 18 H 1.48494 * 109.47219 * 329.99863 * 15 13 11 19 19 C 1.38876 * 119.86430 * 359.70091 * 9 8 7 20 20 C 1.38100 * 119.93239 * 0.02562 * 19 9 8 21 21 C 1.46902 * 111.00249 * 186.75767 * 4 2 1 22 22 C 1.53786 * 113.61541 * 180.02562 * 21 4 2 23 23 C 1.53777 * 87.07920 * 219.94037 * 22 21 4 24 24 C 1.53773 * 87.08670 * 25.43423 * 23 22 21 25 25 H 1.08997 * 109.46763 * 302.64361 * 1 2 3 26 26 H 1.09004 * 109.46714 * 62.63888 * 1 2 3 27 27 H 1.08994 * 109.46879 * 182.64289 * 1 2 3 28 28 H 1.09002 * 109.47188 * 239.99680 * 2 1 3 29 29 H 1.08999 * 109.46921 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.46732 * 299.99514 * 3 2 1 31 31 H 1.08989 * 109.47161 * 60.00024 * 3 2 1 32 32 H 1.08999 * 109.47153 * 181.80318 * 5 4 2 33 33 H 1.09002 * 109.46630 * 301.80398 * 5 4 2 34 34 H 1.08005 * 119.96946 * 359.97438 * 7 6 5 35 35 H 1.08006 * 120.03520 * 180.26885 * 8 7 6 36 36 H 0.97000 * 119.99029 * 180.02562 * 14 13 11 37 37 H 1.08004 * 120.03424 * 179.97438 * 19 9 8 38 38 H 1.07996 * 119.96400 * 179.97438 * 20 19 9 39 39 H 1.08995 * 112.85208 * 311.20241 * 21 4 2 40 40 H 1.08999 * 113.61133 * 105.38971 * 22 21 4 41 41 H 1.09004 * 113.68999 * 334.50135 * 22 21 4 42 42 H 1.08997 * 113.61491 * 139.98976 * 23 22 21 43 43 H 1.09003 * 113.61292 * 270.88060 * 23 22 21 44 44 H 1.09001 * 113.61754 * 89.11194 * 24 23 22 45 45 H 1.09003 * 113.61828 * 220.02649 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 1.6043 -2.1015 1.2004 6 6 2.1998 -2.8015 0.0060 7 6 1.5020 -2.8447 -1.1873 8 6 2.0475 -3.4805 -2.2852 9 6 3.2928 -4.0871 -2.1867 10 8 3.8288 -4.7184 -3.2623 11 6 4.9840 -5.3859 -3.0674 12 1 5.3951 -5.4749 -2.0727 13 6 5.6443 -5.9581 -4.1441 14 7 6.7717 -6.6089 -3.9540 15 14 4.9329 -5.8048 -5.8645 16 1 5.4619 -4.5772 -6.5113 17 1 5.3190 -6.9930 -6.6674 18 1 3.4525 -5.7225 -5.7825 19 6 3.9885 -4.0469 -0.9854 20 6 3.4402 -3.4046 0.1073 21 6 3.4792 -0.5738 1.3169 22 6 4.0570 -1.2797 2.5549 23 6 5.0016 -0.0753 2.7035 24 6 3.9426 0.7481 1.9516 25 1 -0.3633 0.5543 0.8653 26 1 -0.3633 0.4723 -0.9127 27 1 -0.3633 -1.0265 0.0474 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8901 31 1 1.6768 1.9563 0.8899 32 1 1.9527 -2.5824 2.1144 33 1 0.5170 -2.1597 1.1509 34 1 0.5313 -2.3772 -1.2618 35 1 1.5040 -3.5101 -3.2181 36 1 7.2337 -7.0089 -4.7073 37 1 4.9571 -4.5181 -0.9056 38 1 3.9806 -3.3734 1.0418 39 1 3.9997 -0.8202 0.3915 40 1 4.5717 -2.2126 2.3251 41 1 3.3449 -1.3799 3.3742 42 1 5.1476 0.2402 3.7365 43 1 5.9383 -0.1851 2.1570 44 1 3.1983 1.2031 2.6051 45 1 4.3650 1.4521 1.2346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000740886094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:21 Heat of formation + Delta-G solvation = 6.989085 kcal Electronic energy + Delta-G solvation = -23751.605626 eV Core-core repulsion = 20541.897307 eV Total energy + Delta-G solvation = -3209.708318 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.41618 -40.40756 -38.43651 -36.83331 -34.52652 -33.25754 -31.84777 -30.50246 -28.63555 -27.46369 -26.25333 -25.88895 -24.49660 -23.64271 -22.30511 -20.65794 -20.11571 -19.81694 -19.09919 -17.25645 -16.87492 -16.66078 -16.46373 -16.07936 -15.81854 -15.63835 -15.32850 -14.99469 -14.45364 -14.27676 -14.11879 -14.09170 -13.51815 -13.25399 -13.17535 -12.95755 -12.92029 -12.75775 -12.58494 -12.52951 -12.43203 -12.22464 -11.98065 -11.86327 -11.76224 -11.49954 -11.27340 -11.11552 -10.92676 -10.85740 -9.83311 -9.28424 -8.98499 -8.53863 -6.26479 0.51555 0.58449 1.28020 1.32028 1.48582 2.24588 2.69584 2.99823 3.07475 3.17636 3.73500 3.85392 3.94051 3.99835 4.02946 4.11148 4.15670 4.21909 4.26816 4.46943 4.50618 4.58616 4.68782 4.79884 4.85675 4.87563 4.90455 4.95225 4.98231 5.01030 5.07155 5.10070 5.13728 5.19226 5.24034 5.33766 5.39639 5.42049 5.49148 5.54418 5.58738 5.71026 5.76405 5.87397 6.20388 6.23036 6.33512 6.80425 7.54555 8.57936 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.020127 B = 0.004265 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.827474 B = 6563.770361 C = 7196.506776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.065 3.935 3 C -0.147 4.147 4 N -0.503 5.503 5 C 0.103 3.897 6 C -0.181 4.181 7 C -0.058 4.058 8 C -0.194 4.194 9 C 0.120 3.880 10 O -0.245 6.245 11 C -0.400 4.400 12 H 0.078 0.922 13 C 0.011 3.989 14 N -0.922 5.922 15 Si 0.971 3.029 16 H -0.267 1.267 17 H -0.265 1.265 18 H -0.263 1.263 19 C -0.237 4.237 20 C -0.063 4.063 21 C 0.052 3.948 22 C -0.132 4.132 23 C -0.142 4.142 24 C -0.114 4.114 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.027 0.973 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.148 0.852 35 H 0.126 0.874 36 H 0.285 0.715 37 H 0.104 0.896 38 H 0.130 0.870 39 H 0.037 0.963 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.476 15.656 11.891 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.043 4.043 3 C -0.204 4.204 4 N -0.226 5.226 5 C -0.024 4.024 6 C -0.183 4.183 7 C -0.076 4.076 8 C -0.213 4.213 9 C 0.071 3.929 10 O -0.153 6.153 11 C -0.476 4.476 12 H 0.096 0.904 13 C -0.188 4.188 14 N -0.563 5.563 15 Si 0.793 3.207 16 H -0.192 1.192 17 H -0.190 1.190 18 H -0.187 1.187 19 C -0.257 4.257 20 C -0.082 4.082 21 C -0.057 4.057 22 C -0.169 4.169 23 C -0.180 4.180 24 C -0.152 4.152 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.166 0.834 35 H 0.144 0.856 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.147 0.853 39 H 0.055 0.945 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.606 15.771 12.002 22.967 hybrid contribution 1.104 -1.072 -1.633 2.244 sum -10.503 14.698 10.369 20.829 Atomic orbital electron populations 1.21852 0.93179 1.02285 1.02421 1.21717 0.96531 0.95029 0.91066 1.22028 1.01188 0.94926 1.02277 1.62864 1.10478 1.11360 1.37864 1.21152 1.00496 0.86773 0.93968 1.20524 0.95972 1.03916 0.97860 1.20974 0.99466 0.96126 0.91049 1.20514 0.94119 1.05424 1.01278 1.19678 0.93656 0.92437 0.87169 1.83524 1.37885 1.60779 1.33116 1.20672 0.98487 1.31572 0.96863 0.90449 1.25284 0.95072 0.95107 1.03296 1.69732 1.16453 1.35781 1.34333 0.85219 0.79445 0.78535 0.77518 1.19162 1.18962 1.18730 1.21261 1.01887 1.07863 0.94662 1.20999 0.95358 0.94835 0.96988 1.23056 0.87734 0.98601 0.96272 1.23066 0.98757 0.97277 0.97822 1.22748 0.97026 0.96766 1.01461 1.23068 0.97903 0.95187 0.99015 0.91398 0.91793 0.92267 0.95505 0.92767 0.92194 0.91201 0.89650 0.88558 0.83401 0.85611 0.90520 0.87839 0.85277 0.94473 0.92668 0.88453 0.89856 0.91060 0.88572 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.79 71.98 0.63 -1.72 16 2 C 0.06 1.36 2.20 44.92 0.10 1.46 16 3 C -0.15 -2.74 8.03 71.98 0.58 -2.16 16 4 N -0.50 -10.72 4.58 -847.29 -3.88 -14.60 16 5 C 0.10 2.31 5.04 85.56 0.43 2.74 16 6 C -0.18 -5.36 4.14 -19.83 -0.08 -5.44 16 7 C -0.06 -1.77 7.85 22.25 0.17 -1.60 16 8 C -0.19 -7.54 9.99 22.39 0.22 -7.32 16 9 C 0.12 5.72 6.65 22.57 0.15 5.87 16 10 O -0.25 -13.61 8.59 -22.80 -0.20 -13.81 16 11 C -0.40 -23.98 9.90 67.92 0.67 -23.31 16 12 H 0.08 4.89 5.53 -2.91 -0.02 4.88 16 13 C 0.01 0.64 5.49 84.84 0.47 1.11 16 14 N -0.92 -55.66 13.96 21.62 0.30 -55.36 16 15 Si 0.97 45.97 28.62 68.60 1.96 47.93 16 16 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.26 -12.43 7.11 99.48 0.71 -11.73 16 19 C -0.24 -10.69 9.13 22.39 0.20 -10.48 16 20 C -0.06 -2.23 8.29 22.25 0.18 -2.04 16 21 C 0.05 1.18 1.55 45.45 0.07 1.25 16 22 C -0.13 -2.68 6.13 31.12 0.19 -2.49 16 23 C -0.14 -2.59 8.08 31.12 0.25 -2.33 16 24 C -0.11 -2.11 5.75 31.12 0.18 -1.93 16 25 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 27 H 0.06 0.97 5.23 -2.39 -0.01 0.96 16 28 H 0.03 0.72 5.91 -2.39 -0.01 0.70 16 29 H 0.05 1.09 4.98 -2.39 -0.01 1.08 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.16 8.11 -2.39 -0.02 1.14 16 32 H 0.09 1.81 6.91 -2.39 -0.02 1.79 16 33 H 0.10 1.86 6.17 -2.39 -0.01 1.85 16 34 H 0.15 3.53 6.61 -2.91 -0.02 3.51 16 35 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 36 H 0.29 15.74 8.31 -92.71 -0.77 14.97 16 37 H 0.10 5.18 5.71 -2.91 -0.02 5.16 16 38 H 0.13 4.00 5.68 -2.91 -0.02 3.98 16 39 H 0.04 1.10 7.33 -2.39 -0.02 1.09 16 40 H 0.05 1.25 6.25 -2.39 -0.01 1.23 16 41 H 0.10 1.78 7.90 -2.38 -0.02 1.77 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.38 16 44 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.06 1.19 6.76 -2.39 -0.02 1.17 16 Total: -1.00 -64.94 338.38 3.60 -61.34 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.99 Total: 22.88 kcal Atomic # 6 Polarization: -52.81 SS G_CDS: 4.43 Total: -48.39 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -3.58 Total: -69.96 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -0.20 Total: -13.81 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.96 Total: 47.93 kcal Total: -64.94 3.60 -61.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740886094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.328 kcal (2) G-P(sol) polarization free energy of solvation -64.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds