Wall clock time and date at job start Tue Mar 31 2020 05:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46914 * 2 1 4 4 H 1.09000 * 109.46784 * 304.99385 * 3 2 1 5 5 C 1.52998 * 109.47366 * 64.99567 * 3 2 1 6 6 C 1.52994 * 109.46937 * 184.99876 * 3 2 1 7 7 H 1.09001 * 109.47458 * 299.99621 * 6 3 2 8 8 C 1.52998 * 109.47344 * 59.99678 * 6 3 2 9 9 N 1.46500 * 109.47367 * 179.97438 * 6 3 2 10 10 C 1.34768 * 120.00373 * 154.99769 * 9 6 3 11 11 O 1.21278 * 120.00192 * 0.02562 * 10 9 6 12 12 C 1.50707 * 120.00038 * 179.97438 * 10 9 6 13 13 C 1.50697 * 109.46928 * 179.97438 * 12 10 9 14 14 C 1.37636 * 120.13324 * 265.00344 * 13 12 10 15 15 C 1.38611 * 120.25061 * 180.29956 * 14 13 12 16 16 C 1.38664 * 120.50100 * 359.44846 * 15 14 13 17 17 C 1.37594 * 120.24287 * 0.55015 * 16 15 14 18 18 C 1.40705 * 120.12306 * 85.03131 * 13 12 10 19 19 C 1.41387 * 120.24582 * 359.95154 * 18 13 12 20 20 H 1.08006 * 119.99793 * 334.08529 * 19 18 13 21 21 C 1.39940 * 120.00234 * 154.09032 * 19 18 13 22 22 N 1.30822 * 119.99912 * 343.61546 * 21 19 18 23 23 Si 1.86803 * 120.00192 * 163.62649 * 21 19 18 24 24 H 1.48494 * 109.47516 * 89.99468 * 23 21 19 25 25 H 1.48504 * 109.46852 * 209.99866 * 23 21 19 26 26 H 1.48504 * 109.47021 * 329.99095 * 23 21 19 27 27 H 1.09010 * 109.46789 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47519 * 300.00305 * 1 2 3 29 29 H 1.09000 * 109.47301 * 60.00717 * 1 2 3 30 30 H 1.08998 * 109.47519 * 239.99695 * 2 1 3 31 31 H 1.09008 * 109.46695 * 119.99336 * 2 1 3 32 32 H 1.09001 * 109.46890 * 60.00465 * 5 3 2 33 33 H 1.09002 * 109.47370 * 179.97438 * 5 3 2 34 34 H 1.08995 * 109.47292 * 300.00460 * 5 3 2 35 35 H 1.09004 * 109.47546 * 179.97438 * 8 6 3 36 36 H 1.09002 * 109.47370 * 300.00111 * 8 6 3 37 37 H 1.09000 * 109.47318 * 59.99915 * 8 6 3 38 38 H 0.97007 * 119.99793 * 335.00161 * 9 6 3 39 39 H 1.09003 * 109.46843 * 60.00870 * 12 10 9 40 40 H 1.08991 * 109.47194 * 300.00622 * 12 10 9 41 41 H 1.08002 * 119.87644 * 0.02562 * 14 13 12 42 42 H 1.07996 * 119.75145 * 179.69894 * 15 14 13 43 43 H 1.07998 * 119.87531 * 180.29896 * 16 15 14 44 44 H 1.08002 * 120.12524 * 179.74850 * 17 16 15 45 45 H 0.97001 * 120.00439 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6351 2.1266 1.3073 6 6 3.5647 1.4444 -0.1257 7 1 3.9994 0.9054 0.7162 8 6 3.9696 0.7603 -1.4329 9 7 4.0531 2.8256 -0.1263 10 6 5.3117 3.0956 0.2728 11 8 6.0403 2.1951 0.6321 12 6 5.8141 4.5164 0.2716 13 6 7.2400 4.5453 0.7583 14 6 7.5128 4.7980 2.0835 15 6 8.8237 4.8313 2.5326 16 6 9.8737 4.5998 1.6570 17 6 9.6245 4.3452 0.3279 18 6 8.2978 4.3147 -0.1405 19 6 8.0297 4.0537 -1.5040 20 1 7.0832 3.6228 -1.7953 21 6 8.9907 4.3537 -2.4760 22 7 9.9853 5.1531 -2.1876 23 14 8.8533 3.6129 -4.1853 24 1 8.0543 4.5150 -5.0530 25 1 10.2111 3.4451 -4.7627 26 1 8.1852 2.2894 -4.0989 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.0698 1.5877 2.1491 33 1 1.9988 3.1542 1.3075 34 1 0.5488 2.1253 1.3968 35 1 5.0559 0.7620 -1.5227 36 1 3.6063 -0.2674 -1.4330 37 1 3.5350 1.2992 -2.2748 38 1 3.4704 3.5459 -0.4140 39 1 5.1930 5.1220 0.9317 40 1 5.7671 4.9176 -0.7407 41 1 6.7026 4.9753 2.7752 42 1 9.0287 5.0350 3.5731 43 1 10.8910 4.6234 2.0187 44 1 10.4440 4.1692 -0.3532 45 1 10.6517 5.3608 -2.8611 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776852040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:03 Heat of formation + Delta-G solvation = -48.606729 kcal Electronic energy + Delta-G solvation = -23279.116680 eV Core-core repulsion = 20066.997547 eV Total energy + Delta-G solvation = -3212.119133 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.50471 -37.78006 -36.82520 -33.66012 -33.56554 -31.74343 -30.12446 -29.42428 -29.37115 -26.65602 -24.95361 -24.53578 -22.59464 -20.87951 -20.25910 -20.14836 -19.10654 -17.12917 -16.36909 -15.96186 -15.37757 -15.10984 -14.63198 -14.42732 -14.20751 -13.72582 -13.54018 -13.34801 -13.15972 -13.00067 -12.54366 -12.39659 -12.24280 -11.85675 -11.71496 -11.63069 -11.52392 -11.35932 -11.09934 -10.95056 -10.92549 -10.84197 -10.66856 -10.60322 -10.44630 -10.35241 -9.42976 -9.32473 -9.11347 -9.03574 -8.60081 -7.25659 -7.23251 -6.68964 -4.28897 2.83113 3.02815 3.09279 3.14771 3.31202 3.44446 3.73866 3.97466 4.60729 4.71004 4.74095 4.82308 5.14053 5.32268 5.34811 5.45662 5.48901 5.59747 5.67152 5.78211 5.82713 5.85779 5.86800 5.88850 5.93085 6.05323 6.10943 6.19170 6.22631 6.33643 6.37157 6.48015 6.49501 6.56354 6.85802 6.96400 7.13795 7.35021 7.47828 7.69888 7.96144 8.05291 8.14342 8.18561 8.37132 8.70340 8.96812 8.98401 9.07246 10.25359 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015758 B = 0.004715 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.426224 B = 5937.059033 C = 7318.829120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.098 4.098 4 H 0.073 0.927 5 C -0.147 4.147 6 C 0.147 3.853 7 H 0.083 0.917 8 C -0.166 4.166 9 N -0.740 5.740 10 C 0.515 3.485 11 O -0.522 6.522 12 C -0.072 4.072 13 C -0.179 4.179 14 C -0.082 4.082 15 C -0.240 4.240 16 C -0.108 4.108 17 C -0.160 4.160 18 C 0.129 3.871 19 C -0.456 4.456 20 H 0.074 0.926 21 C 0.077 3.923 22 N -0.796 5.796 23 Si 0.901 3.099 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.262 1.262 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.393 0.607 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.116 0.884 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.462 -4.723 0.591 16.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.117 4.117 4 H 0.091 0.909 5 C -0.204 4.204 6 C 0.042 3.958 7 H 0.101 0.899 8 C -0.225 4.225 9 N -0.394 5.394 10 C 0.303 3.697 11 O -0.395 6.395 12 C -0.112 4.112 13 C -0.181 4.181 14 C -0.100 4.100 15 C -0.259 4.259 16 C -0.126 4.126 17 C -0.179 4.179 18 C 0.127 3.873 19 C -0.486 4.486 20 H 0.092 0.908 21 C -0.140 4.140 22 N -0.422 5.422 23 Si 0.725 3.275 24 H -0.196 1.196 25 H -0.201 1.201 26 H -0.186 1.186 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.227 0.773 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.134 0.866 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.689 -5.271 0.752 15.624 hybrid contribution -0.225 0.070 -0.989 1.016 sum -14.914 -5.201 -0.237 15.797 Atomic orbital electron populations 1.21813 0.95886 1.01420 1.01818 1.21614 0.95756 0.95930 1.02546 1.21432 0.94620 0.96852 0.98773 0.90903 1.21860 1.00789 1.00832 0.96968 1.20841 0.92537 0.83723 0.98653 0.89881 1.22254 1.02863 1.00050 0.97295 1.46204 1.14845 1.08391 1.69938 1.21185 0.80396 0.92435 0.75695 1.90670 1.55164 1.47912 1.45795 1.20273 0.95789 0.92026 1.03065 1.19061 0.92122 1.12800 0.94084 1.20293 0.95180 1.00279 0.94265 1.20298 0.93052 1.15006 0.97563 1.20669 0.96496 1.00969 0.94475 1.21286 0.97463 1.05453 0.93713 1.17328 0.90650 0.87030 0.92308 1.19459 1.01430 1.36617 0.91058 0.90805 1.25866 0.94261 0.92929 1.00930 1.69821 1.10990 1.25658 1.35738 0.86431 0.78538 0.80704 0.81781 1.19574 1.20107 1.18562 0.92930 0.92545 0.92845 0.91329 0.91799 0.92668 0.92404 0.92616 0.91664 0.91992 0.92786 0.77335 0.90788 0.88696 0.89831 0.89726 0.89636 0.86590 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.77 16 2 C -0.12 -1.06 5.19 -26.73 -0.14 -1.20 16 3 C -0.10 -0.96 2.02 -90.62 -0.18 -1.14 16 4 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.15 -1.40 8.79 37.16 0.33 -1.07 16 6 C 0.15 1.95 2.16 -67.93 -0.15 1.81 16 7 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 8 C -0.17 -2.23 9.14 37.16 0.34 -1.89 16 9 N -0.74 -10.77 4.38 -53.81 -0.24 -11.01 16 10 C 0.52 10.08 7.43 -10.99 -0.08 10.00 16 11 O -0.52 -12.60 15.70 5.56 0.09 -12.52 16 12 C -0.07 -1.42 5.18 -29.03 -0.15 -1.57 16 13 C -0.18 -4.37 4.43 -103.91 -0.46 -4.83 16 14 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 15 C -0.24 -5.70 10.05 -39.29 -0.39 -6.10 16 16 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 17 C -0.16 -4.35 8.68 -38.87 -0.34 -4.69 16 18 C 0.13 3.51 5.56 -106.83 -0.59 2.91 16 19 C -0.46 -12.16 8.14 -37.75 -0.31 -12.47 16 20 H 0.07 1.92 6.68 -52.48 -0.35 1.57 16 21 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 22 N -0.80 -20.84 10.97 55.55 0.61 -20.23 16 23 Si 0.90 19.11 29.59 -169.99 -5.03 14.08 16 24 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.26 -5.63 7.11 56.52 0.40 -5.22 16 27 H 0.05 0.36 8.14 -51.92 -0.42 -0.07 16 28 H 0.06 0.40 6.56 -51.93 -0.34 0.06 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.60 6.17 -51.93 -0.32 0.28 16 31 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 34 H 0.05 0.45 6.56 -51.93 -0.34 0.11 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.70 6.32 -51.93 -0.33 0.37 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.39 4.57 8.39 -40.82 -0.34 4.22 16 39 H 0.07 1.23 8.05 -51.93 -0.42 0.81 16 40 H 0.09 1.86 7.06 -51.93 -0.37 1.49 16 41 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 44 H 0.12 3.24 6.22 -52.49 -0.33 2.91 16 45 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 359.75 15.07 5.42 5.42 Total: -1.00 -30.68 359.75 -9.06 -39.75 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -7.28 Total: 9.02 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -2.64 Total: -24.52 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.37 Total: -31.23 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.68 -9.06 -39.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776852040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.861 kcal (2) G-P(sol) polarization free energy of solvation -30.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds