Wall clock time and date at job start Tue Mar 31 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46914 * 2 1 4 4 H 1.09000 * 109.46784 * 304.99385 * 3 2 1 5 5 C 1.52998 * 109.47366 * 64.99567 * 3 2 1 6 6 C 1.52994 * 109.46937 * 184.99876 * 3 2 1 7 7 H 1.09001 * 109.47458 * 299.99621 * 6 3 2 8 8 C 1.52998 * 109.47344 * 59.99678 * 6 3 2 9 9 N 1.46500 * 109.47367 * 179.97438 * 6 3 2 10 10 C 1.34768 * 120.00373 * 154.99769 * 9 6 3 11 11 O 1.21278 * 120.00192 * 0.02562 * 10 9 6 12 12 C 1.50707 * 120.00038 * 179.97438 * 10 9 6 13 13 C 1.50697 * 109.46928 * 179.97438 * 12 10 9 14 14 C 1.37636 * 120.13324 * 265.00344 * 13 12 10 15 15 C 1.38611 * 120.25061 * 180.29956 * 14 13 12 16 16 C 1.38664 * 120.50100 * 359.44846 * 15 14 13 17 17 C 1.37594 * 120.24287 * 0.55015 * 16 15 14 18 18 C 1.40705 * 120.12306 * 85.03131 * 13 12 10 19 19 C 1.41387 * 120.24582 * 359.95154 * 18 13 12 20 20 H 1.08006 * 119.99793 * 334.08529 * 19 18 13 21 21 C 1.39940 * 120.00234 * 154.09032 * 19 18 13 22 22 N 1.30822 * 119.99912 * 343.61546 * 21 19 18 23 23 Si 1.86803 * 120.00192 * 163.62649 * 21 19 18 24 24 H 1.48494 * 109.47516 * 89.99468 * 23 21 19 25 25 H 1.48504 * 109.46852 * 209.99866 * 23 21 19 26 26 H 1.48504 * 109.47021 * 329.99095 * 23 21 19 27 27 H 1.09010 * 109.46789 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47519 * 300.00305 * 1 2 3 29 29 H 1.09000 * 109.47301 * 60.00717 * 1 2 3 30 30 H 1.08998 * 109.47519 * 239.99695 * 2 1 3 31 31 H 1.09008 * 109.46695 * 119.99336 * 2 1 3 32 32 H 1.09001 * 109.46890 * 60.00465 * 5 3 2 33 33 H 1.09002 * 109.47370 * 179.97438 * 5 3 2 34 34 H 1.08995 * 109.47292 * 300.00460 * 5 3 2 35 35 H 1.09004 * 109.47546 * 179.97438 * 8 6 3 36 36 H 1.09002 * 109.47370 * 300.00111 * 8 6 3 37 37 H 1.09000 * 109.47318 * 59.99915 * 8 6 3 38 38 H 0.97007 * 119.99793 * 335.00161 * 9 6 3 39 39 H 1.09003 * 109.46843 * 60.00870 * 12 10 9 40 40 H 1.08991 * 109.47194 * 300.00622 * 12 10 9 41 41 H 1.08002 * 119.87644 * 0.02562 * 14 13 12 42 42 H 1.07996 * 119.75145 * 179.69894 * 15 14 13 43 43 H 1.07998 * 119.87531 * 180.29896 * 16 15 14 44 44 H 1.08002 * 120.12524 * 179.74850 * 17 16 15 45 45 H 0.97001 * 120.00439 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6351 2.1266 1.3073 6 6 3.5647 1.4444 -0.1257 7 1 3.9994 0.9054 0.7162 8 6 3.9696 0.7603 -1.4329 9 7 4.0531 2.8256 -0.1263 10 6 5.3117 3.0956 0.2728 11 8 6.0403 2.1951 0.6321 12 6 5.8141 4.5164 0.2716 13 6 7.2400 4.5453 0.7583 14 6 7.5128 4.7980 2.0835 15 6 8.8237 4.8313 2.5326 16 6 9.8737 4.5998 1.6570 17 6 9.6245 4.3452 0.3279 18 6 8.2978 4.3147 -0.1405 19 6 8.0297 4.0537 -1.5040 20 1 7.0832 3.6228 -1.7953 21 6 8.9907 4.3537 -2.4760 22 7 9.9853 5.1531 -2.1876 23 14 8.8533 3.6129 -4.1853 24 1 8.0543 4.5150 -5.0530 25 1 10.2111 3.4451 -4.7627 26 1 8.1852 2.2894 -4.0989 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.0698 1.5877 2.1491 33 1 1.9988 3.1542 1.3075 34 1 0.5488 2.1253 1.3968 35 1 5.0559 0.7620 -1.5227 36 1 3.6063 -0.2674 -1.4330 37 1 3.5350 1.2992 -2.2748 38 1 3.4704 3.5459 -0.4140 39 1 5.1930 5.1220 0.9317 40 1 5.7671 4.9176 -0.7407 41 1 6.7026 4.9753 2.7752 42 1 9.0287 5.0350 3.5731 43 1 10.8910 4.6234 2.0187 44 1 10.4440 4.1692 -0.3532 45 1 10.6517 5.3608 -2.8611 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776852040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:02 Heat of formation + Delta-G solvation = -65.211789 kcal Electronic energy + Delta-G solvation = -23279.836730 eV Core-core repulsion = 20066.997547 eV Total energy + Delta-G solvation = -3212.839183 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.94424 -39.36487 -38.18898 -35.49573 -34.82322 -33.45362 -31.44925 -31.20985 -30.20211 -28.37035 -26.85064 -25.33484 -23.70968 -22.81247 -21.81947 -21.26201 -20.52720 -19.06050 -17.78927 -17.35365 -17.11883 -16.23095 -16.15513 -15.86041 -15.42619 -15.29325 -14.93482 -14.62737 -14.46852 -14.35362 -14.09714 -13.56856 -13.43441 -13.34576 -12.99165 -12.88963 -12.75078 -12.69711 -12.62166 -12.49415 -12.48308 -12.24644 -12.13130 -11.61619 -11.43527 -11.32825 -11.31248 -11.20397 -11.01810 -10.64689 -9.92949 -9.22026 -9.14912 -8.59305 -6.28604 1.00266 1.14132 1.34695 1.46064 1.53241 1.90549 2.19628 2.42897 2.79296 3.70547 3.77958 3.95965 4.04406 4.17855 4.35519 4.38530 4.42915 4.49373 4.59185 4.62911 4.67625 4.71977 4.74309 4.80338 4.82032 4.88684 5.00614 5.07792 5.09149 5.17982 5.20532 5.21999 5.24868 5.36507 5.37321 5.52182 5.55730 5.56451 5.72278 5.78537 6.04750 6.17716 6.21975 6.42963 6.71688 6.79228 7.00141 7.12288 7.53277 8.37379 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015758 B = 0.004715 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.426224 B = 5937.059033 C = 7318.829120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.086 4.086 4 H 0.090 0.910 5 C -0.147 4.147 6 C 0.146 3.854 7 H 0.056 0.944 8 C -0.162 4.162 9 N -0.718 5.718 10 C 0.518 3.482 11 O -0.576 6.576 12 C -0.071 4.071 13 C -0.186 4.186 14 C -0.092 4.092 15 C -0.243 4.243 16 C -0.118 4.118 17 C -0.195 4.195 18 C 0.096 3.904 19 C -0.482 4.482 20 H 0.070 0.930 21 C 0.037 3.963 22 N -0.827 5.827 23 Si 0.970 3.030 24 H -0.254 1.254 25 H -0.268 1.268 26 H -0.269 1.269 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.022 0.978 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.412 0.588 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.236 -4.545 0.279 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.105 4.105 4 H 0.108 0.892 5 C -0.204 4.204 6 C 0.041 3.959 7 H 0.074 0.926 8 C -0.220 4.220 9 N -0.372 5.372 10 C 0.305 3.695 11 O -0.455 6.455 12 C -0.110 4.110 13 C -0.188 4.188 14 C -0.111 4.111 15 C -0.262 4.262 16 C -0.136 4.136 17 C -0.215 4.215 18 C 0.094 3.906 19 C -0.512 4.512 20 H 0.088 0.912 21 C -0.178 4.178 22 N -0.453 5.453 23 Si 0.791 3.209 24 H -0.178 1.178 25 H -0.192 1.192 26 H -0.193 1.193 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.041 0.959 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.248 0.752 39 H 0.129 0.871 40 H 0.114 0.886 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.515 -5.064 0.433 18.238 hybrid contribution 0.598 0.019 -0.782 0.985 sum -16.917 -5.045 -0.349 17.656 Atomic orbital electron populations 1.21786 0.94419 1.02060 1.02330 1.21618 0.96965 0.94959 1.02317 1.21370 0.91437 0.98027 0.99688 0.89182 1.21864 1.02021 1.00341 0.96157 1.20966 0.94987 0.82329 0.97581 0.92568 1.22218 1.00114 1.01839 0.97869 1.45983 1.13397 1.09843 1.67952 1.21076 0.81379 0.91649 0.75353 1.90654 1.56966 1.49172 1.48684 1.20293 0.93964 0.92967 1.03808 1.19558 0.93900 1.10978 0.94322 1.20736 0.96222 0.99530 0.94569 1.20714 0.92936 1.13699 0.98843 1.20944 0.98129 1.00639 0.93922 1.21302 0.97400 1.08094 0.94665 1.17727 0.91461 0.88021 0.93384 1.19606 1.02070 1.37900 0.91652 0.91156 1.26652 0.93643 0.92814 1.04642 1.69881 1.11708 1.26498 1.37261 0.85392 0.78899 0.79459 0.77135 1.17807 1.19233 1.19345 0.92333 0.92181 0.92138 0.91194 0.92529 0.93961 0.92597 0.90634 0.95859 0.89839 0.91257 0.75189 0.87060 0.88622 0.86596 0.86709 0.87719 0.88602 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.67 71.98 0.70 -1.06 16 2 C -0.12 -1.84 5.19 30.59 0.16 -1.68 16 3 C -0.09 -1.48 2.02 -10.80 -0.02 -1.50 16 4 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 5 C -0.15 -2.42 8.79 71.98 0.63 -1.79 16 6 C 0.15 3.73 2.16 44.99 0.10 3.83 16 7 H 0.06 1.78 7.58 -2.39 -0.02 1.76 16 8 C -0.16 -4.24 9.14 71.98 0.66 -3.58 16 9 N -0.72 -20.03 4.38 -442.55 -1.94 -21.97 16 10 C 0.52 20.15 7.43 87.66 0.65 20.81 16 11 O -0.58 -28.63 15.70 -3.02 -0.05 -28.68 16 12 C -0.07 -2.74 5.18 29.10 0.15 -2.59 16 13 C -0.19 -9.12 4.43 -19.40 -0.09 -9.21 16 14 C -0.09 -4.26 9.66 22.22 0.21 -4.04 16 15 C -0.24 -11.32 10.05 22.46 0.23 -11.09 16 16 C -0.12 -5.96 10.02 22.22 0.22 -5.74 16 17 C -0.20 -11.06 8.68 22.73 0.20 -10.86 16 18 C 0.10 5.39 5.56 -21.29 -0.12 5.28 16 19 C -0.48 -26.59 8.14 23.46 0.19 -26.40 16 20 H 0.07 3.78 6.68 -2.91 -0.02 3.76 16 21 C 0.04 1.91 5.16 85.26 0.44 2.35 16 22 N -0.83 -44.61 10.97 21.82 0.24 -44.38 16 23 Si 0.97 39.80 29.59 68.60 2.03 41.83 16 24 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 25 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 27 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.06 0.67 6.56 -2.39 -0.02 0.65 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.63 16 30 H 0.07 1.05 6.17 -2.39 -0.01 1.03 16 31 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.94 7.45 -2.39 -0.02 0.92 16 34 H 0.07 0.97 6.56 -2.39 -0.02 0.95 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 1.79 6.32 -2.39 -0.02 1.77 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.41 8.52 8.39 -92.70 -0.78 7.74 16 39 H 0.11 3.40 8.05 -2.39 -0.02 3.38 16 40 H 0.10 3.69 7.06 -2.39 -0.02 3.67 16 41 H 0.12 4.49 8.06 -2.91 -0.02 4.47 16 42 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 43 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 44 H 0.10 5.67 6.22 -2.91 -0.02 5.66 16 45 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 Total: -1.00 -69.79 359.75 4.79 -65.01 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.20 Total: 35.45 kcal Atomic # 6 Polarization: -51.58 SS G_CDS: 4.31 Total: -47.27 kcal Atomic # 7 Polarization: -64.64 SS G_CDS: -1.70 Total: -66.34 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.05 Total: -28.68 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -69.79 4.79 -65.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776852040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.206 kcal (2) G-P(sol) polarization free energy of solvation -69.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds