Wall clock time and date at job start Tue Mar 31 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47274 * 2 1 4 4 H 1.09001 * 109.46869 * 55.00263 * 3 2 1 5 5 C 1.52999 * 109.47506 * 295.00365 * 3 2 1 6 6 C 1.53002 * 109.47081 * 175.00032 * 3 2 1 7 7 H 1.08994 * 109.47657 * 305.00519 * 6 3 2 8 8 C 1.53004 * 109.46894 * 65.00475 * 6 3 2 9 9 N 1.46498 * 109.46942 * 185.00308 * 6 3 2 10 10 C 1.34776 * 119.99716 * 155.00316 * 9 6 3 11 11 O 1.21280 * 120.00242 * 359.97438 * 10 9 6 12 12 C 1.50704 * 119.99769 * 179.97438 * 10 9 6 13 13 C 1.50708 * 109.46836 * 180.02562 * 12 10 9 14 14 C 1.37638 * 120.12731 * 264.99646 * 13 12 10 15 15 C 1.38612 * 120.24716 * 179.70195 * 14 13 12 16 16 C 1.38654 * 120.50391 * 0.02770 * 15 14 13 17 17 C 1.37598 * 120.24493 * 0.02562 * 16 15 14 18 18 C 1.40695 * 120.12811 * 84.72781 * 13 12 10 19 19 C 1.41400 * 120.24227 * 0.24689 * 18 13 12 20 20 H 1.07999 * 120.00083 * 334.04667 * 19 18 13 21 21 C 1.39956 * 119.99758 * 154.03962 * 19 18 13 22 22 N 1.30823 * 119.99664 * 343.67404 * 21 19 18 23 23 Si 1.86795 * 119.99774 * 163.67226 * 21 19 18 24 24 H 1.48500 * 109.47179 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46832 * 120.00304 * 23 21 19 26 26 H 1.48500 * 109.47145 * 240.00294 * 23 21 19 27 27 H 1.08995 * 109.47067 * 59.98901 * 1 2 3 28 28 H 1.09000 * 109.47244 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46377 * 299.99661 * 1 2 3 30 30 H 1.09010 * 109.46888 * 240.00303 * 2 1 3 31 31 H 1.09004 * 109.47382 * 120.00604 * 2 1 3 32 32 H 1.09000 * 109.46508 * 59.99986 * 5 3 2 33 33 H 1.08995 * 109.47128 * 179.97438 * 5 3 2 34 34 H 1.08998 * 109.47236 * 300.00289 * 5 3 2 35 35 H 1.09000 * 109.46968 * 180.02562 * 8 6 3 36 36 H 1.08999 * 109.47144 * 299.99971 * 8 6 3 37 37 H 1.09003 * 109.46778 * 59.99891 * 8 6 3 38 38 H 0.96992 * 120.00487 * 335.00156 * 9 6 3 39 39 H 1.09000 * 109.46970 * 60.00650 * 12 10 9 40 40 H 1.08995 * 109.47187 * 299.99730 * 12 10 9 41 41 H 1.08001 * 119.87503 * 359.73491 * 14 13 12 42 42 H 1.08000 * 119.74526 * 180.02562 * 15 14 13 43 43 H 1.07996 * 119.87718 * 179.97438 * 16 15 14 44 44 H 1.08003 * 120.12563 * 179.97438 * 17 16 15 45 45 H 0.97005 * 119.99322 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6353 2.1266 -1.3073 6 6 3.5649 1.4442 0.1257 7 1 3.8572 0.8799 1.0112 8 6 4.1798 0.7976 -1.1171 9 7 4.0433 2.8237 0.2459 10 6 5.2191 3.0786 0.8534 11 8 5.8808 2.1661 1.3010 12 6 5.7115 4.4976 0.9765 13 6 7.0392 4.5084 1.6895 14 6 7.0919 4.7208 3.0484 15 6 8.3112 4.7251 3.7077 16 6 9.4901 4.5167 3.0084 17 6 9.4614 4.3035 1.6493 18 6 8.2292 4.2959 0.9696 19 6 8.1873 4.0763 -0.4266 20 1 7.3004 3.6604 -0.8815 21 6 9.2951 4.3980 -1.2191 22 7 10.2311 5.1812 -0.7479 23 14 9.4372 3.7089 -2.9495 24 1 8.2564 2.8571 -3.2416 25 1 9.4935 4.8275 -3.9246 26 1 10.6744 2.8949 -3.0581 27 1 -0.3633 0.5140 -0.8898 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 0.5489 2.1253 -1.3967 33 1 1.9983 3.1544 -1.3070 34 1 2.0698 1.5876 -2.1491 35 1 5.2661 0.7984 -1.0274 36 1 3.8238 -0.2288 -1.2066 37 1 3.8875 1.3620 -2.0027 38 1 3.5140 3.5535 -0.1118 39 1 4.9893 5.0848 1.5436 40 1 5.8299 4.9286 -0.0176 41 1 6.1797 4.8841 3.6031 42 1 8.3430 4.8921 4.7742 43 1 10.4346 4.5226 3.5322 44 1 10.3810 4.1418 1.1064 45 1 10.9991 5.4038 -1.2971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776852042.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:07 Heat of formation + Delta-G solvation = -64.070011 kcal Electronic energy + Delta-G solvation = -23288.400214 eV Core-core repulsion = 20075.610543 eV Total energy + Delta-G solvation = -3212.789672 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.97332 -39.40293 -38.28766 -35.49502 -34.80382 -33.45313 -31.50898 -31.26475 -29.53531 -28.39125 -26.89090 -26.14356 -23.73632 -22.81456 -21.88809 -20.95805 -20.16342 -19.06127 -17.92338 -17.30822 -16.99491 -16.31247 -16.19046 -16.02277 -15.45745 -15.38110 -15.10728 -14.65634 -14.50056 -14.37884 -13.87666 -13.54697 -13.37548 -13.13079 -13.07046 -12.91165 -12.90115 -12.74816 -12.68318 -12.59748 -12.48214 -12.11713 -11.87920 -11.62542 -11.45889 -11.33437 -11.30321 -11.19716 -11.03044 -10.66454 -9.94911 -9.22147 -9.15161 -8.59412 -6.28777 0.99389 1.13753 1.34818 1.48231 1.51656 1.89124 2.19610 2.42297 2.79025 3.74180 3.78322 3.91660 4.05046 4.16952 4.34950 4.38147 4.42905 4.47286 4.56695 4.62476 4.67713 4.71044 4.73948 4.77238 4.81551 4.92321 5.03438 5.07520 5.11025 5.18438 5.20642 5.22842 5.24623 5.30443 5.37252 5.54294 5.55533 5.60903 5.70615 5.78471 6.04618 6.17694 6.21853 6.42841 6.71073 6.78197 7.00120 7.12096 7.51673 8.37413 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.004710 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.433400 B = 5943.852881 C = 7273.656116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 C -0.087 4.087 4 H 0.078 0.922 5 C -0.152 4.152 6 C 0.145 3.855 7 H 0.057 0.943 8 C -0.162 4.162 9 N -0.720 5.720 10 C 0.516 3.484 11 O -0.576 6.576 12 C -0.071 4.071 13 C -0.186 4.186 14 C -0.093 4.093 15 C -0.242 4.242 16 C -0.118 4.118 17 C -0.195 4.195 18 C 0.096 3.904 19 C -0.482 4.482 20 H 0.070 0.930 21 C 0.036 3.964 22 N -0.827 5.827 23 Si 0.971 3.029 24 H -0.263 1.263 25 H -0.259 1.259 26 H -0.270 1.270 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.021 0.979 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.411 0.589 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.971 -4.539 -3.441 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.106 4.106 4 H 0.096 0.904 5 C -0.209 4.209 6 C 0.041 3.959 7 H 0.075 0.925 8 C -0.220 4.220 9 N -0.374 5.374 10 C 0.304 3.696 11 O -0.454 6.454 12 C -0.111 4.111 13 C -0.188 4.188 14 C -0.111 4.111 15 C -0.261 4.261 16 C -0.136 4.136 17 C -0.214 4.214 18 C 0.094 3.906 19 C -0.512 4.512 20 H 0.088 0.912 21 C -0.178 4.178 22 N -0.454 5.454 23 Si 0.792 3.208 24 H -0.187 1.187 25 H -0.184 1.184 26 H -0.195 1.195 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.040 0.960 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.248 0.752 39 H 0.130 0.870 40 H 0.114 0.886 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.290 -5.065 -3.190 18.297 hybrid contribution 0.714 0.050 -0.651 0.967 sum -16.577 -5.015 -3.841 17.739 Atomic orbital electron populations 1.21788 0.94447 1.02069 1.02304 1.21576 0.96932 0.94951 1.02228 1.21344 0.91382 0.97998 0.99873 0.90393 1.21982 1.02346 1.00286 0.96283 1.20962 0.94696 0.82424 0.97841 0.92509 1.22239 0.99412 1.01847 0.98493 1.46050 1.21692 1.09622 1.60063 1.21110 0.80421 0.91803 0.76238 1.90652 1.56952 1.48303 1.49491 1.20295 0.95111 0.92959 1.02693 1.19559 0.93883 1.11224 0.94099 1.20741 0.97109 0.99557 0.93660 1.20714 0.92688 1.13841 0.98901 1.20945 0.97608 1.00708 0.94374 1.21304 0.98331 1.08126 0.93665 1.17731 0.91318 0.87959 0.93598 1.19638 1.00715 1.38330 0.92475 0.91173 1.26659 0.94159 0.92622 1.04356 1.69892 1.09378 1.26428 1.39657 0.85332 0.79126 0.79156 0.77172 1.18680 1.18362 1.19463 0.91645 0.92293 0.92736 0.91228 0.92636 0.90718 0.92453 0.92039 0.95985 0.90079 0.90870 0.75227 0.87028 0.88624 0.86572 0.86690 0.87704 0.88593 0.90399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.67 71.98 0.70 -1.10 16 2 C -0.12 -1.84 5.03 30.59 0.15 -1.68 16 3 C -0.09 -1.51 2.32 -10.79 -0.03 -1.54 16 4 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 5 C -0.15 -2.14 8.33 71.98 0.60 -1.54 16 6 C 0.15 3.76 2.35 44.99 0.11 3.87 16 7 H 0.06 1.80 7.58 -2.39 -0.02 1.78 16 8 C -0.16 -4.27 8.75 71.98 0.63 -3.64 16 9 N -0.72 -20.44 5.01 -442.53 -2.22 -22.66 16 10 C 0.52 20.29 7.42 87.66 0.65 20.94 16 11 O -0.58 -28.69 15.70 -3.03 -0.05 -28.74 16 12 C -0.07 -2.77 5.18 29.11 0.15 -2.62 16 13 C -0.19 -9.14 4.43 -19.40 -0.09 -9.22 16 14 C -0.09 -4.26 9.66 22.22 0.21 -4.05 16 15 C -0.24 -11.29 10.05 22.46 0.23 -11.07 16 16 C -0.12 -5.96 10.02 22.22 0.22 -5.74 16 17 C -0.19 -11.04 8.68 22.73 0.20 -10.84 16 18 C 0.10 5.39 5.56 -21.29 -0.12 5.27 16 19 C -0.48 -26.57 8.15 23.47 0.19 -26.38 16 20 H 0.07 3.79 6.67 -2.91 -0.02 3.77 16 21 C 0.04 1.89 5.16 85.26 0.44 2.33 16 22 N -0.83 -44.62 10.97 21.83 0.24 -44.38 16 23 Si 0.97 39.87 29.59 68.60 2.03 41.90 16 24 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 26 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 27 H 0.06 0.69 6.56 -2.39 -0.02 0.67 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.07 1.04 6.81 -2.38 -0.02 1.02 16 31 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.07 0.83 6.56 -2.39 -0.02 0.81 16 33 H 0.06 0.78 6.77 -2.39 -0.02 0.77 16 34 H 0.06 0.90 6.35 -2.39 -0.02 0.88 16 35 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 1.76 6.68 -2.39 -0.02 1.75 16 37 H 0.07 1.69 6.34 -2.39 -0.02 1.68 16 38 H 0.41 8.79 7.18 -92.71 -0.67 8.12 16 39 H 0.11 3.43 8.05 -2.39 -0.02 3.41 16 40 H 0.10 3.71 7.06 -2.39 -0.02 3.69 16 41 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 42 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 43 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 44 H 0.10 5.68 6.22 -2.91 -0.02 5.66 16 45 H 0.29 13.94 8.30 -92.70 -0.77 13.17 16 Total: -1.00 -69.70 355.37 4.57 -65.13 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: 0.32 Total: 35.76 kcal Atomic # 6 Polarization: -51.26 SS G_CDS: 4.25 Total: -47.01 kcal Atomic # 7 Polarization: -65.06 SS G_CDS: -1.98 Total: -67.04 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -0.05 Total: -28.74 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -69.70 4.57 -65.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776852042.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.059 kcal (2) G-P(sol) polarization free energy of solvation -69.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds