Wall clock time and date at job start Tue Mar 31 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47557 * 2 1 4 4 H 1.09006 * 109.46584 * 55.00056 * 3 2 1 5 5 C 1.52995 * 109.47293 * 295.00197 * 3 2 1 6 6 C 1.53003 * 109.47501 * 174.99721 * 3 2 1 7 7 H 1.09004 * 109.46401 * 60.00012 * 6 3 2 8 8 C 1.52995 * 109.47235 * 300.00511 * 6 3 2 9 9 N 1.46496 * 109.47035 * 180.02562 * 6 3 2 10 10 C 1.34776 * 119.99822 * 205.00209 * 9 6 3 11 11 O 1.21281 * 120.00092 * 0.02562 * 10 9 6 12 12 C 1.50694 * 120.00222 * 180.02562 * 10 9 6 13 13 C 1.50705 * 109.47406 * 179.97438 * 12 10 9 14 14 C 1.37627 * 120.12919 * 264.97763 * 13 12 10 15 15 C 1.38620 * 120.25010 * 179.97438 * 14 13 12 16 16 C 1.38658 * 120.49737 * 0.05065 * 15 14 13 17 17 C 1.37590 * 120.24831 * 359.66497 * 16 15 14 18 18 C 1.40694 * 120.12421 * 85.00097 * 13 12 10 19 19 C 1.41401 * 120.24909 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99476 * 334.63066 * 19 18 13 21 21 C 1.39937 * 120.00298 * 154.63105 * 19 18 13 22 22 N 1.30822 * 120.00325 * 334.67536 * 21 19 18 23 23 Si 1.86803 * 120.00022 * 154.67422 * 21 19 18 24 24 H 1.48500 * 109.47132 * 179.97438 * 23 21 19 25 25 H 1.48492 * 109.47144 * 300.00104 * 23 21 19 26 26 H 1.48509 * 109.46903 * 60.00147 * 23 21 19 27 27 H 1.08999 * 109.46956 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47062 * 59.99811 * 1 2 3 29 29 H 1.08992 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47375 * 239.99821 * 2 1 3 31 31 H 1.09004 * 109.47060 * 119.99897 * 2 1 3 32 32 H 1.08999 * 109.47165 * 59.99328 * 5 3 2 33 33 H 1.08992 * 109.47627 * 179.97438 * 5 3 2 34 34 H 1.09004 * 109.47018 * 300.00238 * 5 3 2 35 35 H 1.09006 * 109.47190 * 299.99873 * 8 6 3 36 36 H 1.09004 * 109.47637 * 59.99175 * 8 6 3 37 37 H 1.08999 * 109.47165 * 180.02562 * 8 6 3 38 38 H 0.96995 * 120.00757 * 24.99936 * 9 6 3 39 39 H 1.09001 * 109.47466 * 60.00140 * 12 10 9 40 40 H 1.09005 * 109.47000 * 300.00047 * 12 10 9 41 41 H 1.08002 * 119.87657 * 0.02562 * 14 13 12 42 42 H 1.07996 * 119.75155 * 180.02562 * 15 14 13 43 43 H 1.07998 * 119.87354 * 179.97438 * 16 15 14 44 44 H 1.08005 * 120.12571 * 180.29985 * 17 16 15 45 45 H 0.97005 * 119.99423 * 354.19309 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6354 2.1266 -1.3073 6 6 3.5649 1.4443 0.1258 7 1 3.9995 0.9052 -0.7161 8 6 3.9697 0.7602 1.4331 9 7 4.0532 2.8255 0.1264 10 6 5.3119 3.0954 -0.2727 11 8 6.0402 2.1949 -0.6327 12 6 5.8144 4.5161 -0.2716 13 6 7.2409 4.5448 -0.7570 14 6 8.2787 4.5255 0.1467 15 6 9.5917 4.5513 -0.2971 16 6 9.8752 4.5979 -1.6536 17 6 8.8536 4.6120 -2.5751 18 6 7.5167 4.5920 -2.1358 19 6 6.4586 4.6122 -3.0736 20 1 5.4978 4.1936 -2.8127 21 6 6.6563 5.1745 -4.3397 22 7 7.5753 6.0894 -4.5129 23 14 5.6081 4.6187 -5.7826 24 1 6.0120 5.3620 -7.0031 25 1 5.8007 3.1629 -6.0026 26 1 4.1779 4.8901 -5.4889 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5491 2.1252 -1.3969 33 1 1.9983 3.1543 -1.3071 34 1 2.0699 1.5875 -2.1491 35 1 3.5350 1.2992 2.2750 36 1 3.6062 -0.2675 1.4331 37 1 5.0559 0.7619 1.5229 38 1 3.4707 3.5458 0.4139 39 1 5.7675 4.9173 0.7408 40 1 5.1933 5.1217 -0.9316 41 1 8.0694 4.4892 1.2056 42 1 10.3998 4.5354 0.4191 43 1 10.9018 4.6181 -1.9881 44 1 9.0768 4.6434 -3.6314 45 1 8.0616 6.4387 -3.7498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776852043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:10 Heat of formation + Delta-G solvation = -54.668215 kcal Electronic energy + Delta-G solvation = -23373.457155 eV Core-core repulsion = 20161.075175 eV Total energy + Delta-G solvation = -3212.381979 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.55485 -37.91669 -36.93168 -33.80588 -33.67899 -31.84991 -30.17199 -29.40144 -29.15986 -26.70559 -24.86039 -24.53670 -22.64734 -20.88869 -20.40988 -20.16988 -19.29011 -17.68295 -16.41313 -16.01317 -15.12126 -14.91599 -14.85644 -14.37265 -14.13193 -13.96979 -13.60478 -13.38658 -13.29395 -13.06608 -12.52845 -12.22783 -12.22105 -11.96363 -11.88222 -11.69277 -11.65380 -11.41193 -11.18291 -11.04427 -10.84020 -10.78483 -10.61725 -10.47792 -10.41648 -10.35752 -9.59810 -9.33007 -9.10377 -8.91367 -8.64466 -7.50409 -7.45087 -7.07454 -4.36754 2.80674 2.89975 3.17915 3.31859 3.38971 3.40363 3.68279 4.05791 4.59985 4.63933 4.75225 4.82781 5.14585 5.31432 5.32661 5.43950 5.48051 5.51332 5.62682 5.73914 5.78036 5.81788 5.87499 5.89467 5.94705 5.95946 6.04146 6.15737 6.22259 6.25700 6.31670 6.37887 6.39879 6.42111 6.74106 6.91960 7.05363 7.26452 7.47451 7.73254 7.87942 7.91464 7.99333 8.03500 8.26477 8.40276 8.84321 8.93136 8.98114 10.11948 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014383 B = 0.005125 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.340408 B = 5462.161791 C = 7024.010774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.097 4.097 4 H 0.072 0.928 5 C -0.149 4.149 6 C 0.146 3.854 7 H 0.085 0.915 8 C -0.163 4.163 9 N -0.739 5.739 10 C 0.516 3.484 11 O -0.522 6.522 12 C -0.071 4.071 13 C -0.182 4.182 14 C -0.070 4.070 15 C -0.253 4.253 16 C -0.087 4.087 17 C -0.216 4.216 18 C 0.117 3.883 19 C -0.516 4.516 20 H 0.072 0.928 21 C 0.041 3.959 22 N -0.800 5.800 23 Si 1.059 2.941 24 H -0.274 1.274 25 H -0.275 1.275 26 H -0.277 1.277 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.060 0.940 38 H 0.393 0.607 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.040 -5.917 7.809 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.116 4.116 4 H 0.090 0.910 5 C -0.207 4.207 6 C 0.041 3.959 7 H 0.103 0.897 8 C -0.222 4.222 9 N -0.393 5.393 10 C 0.303 3.697 11 O -0.395 6.395 12 C -0.111 4.111 13 C -0.184 4.184 14 C -0.088 4.088 15 C -0.273 4.273 16 C -0.105 4.105 17 C -0.235 4.235 18 C 0.114 3.886 19 C -0.544 4.544 20 H 0.090 0.910 21 C -0.181 4.181 22 N -0.423 5.423 23 Si 0.883 3.117 24 H -0.199 1.199 25 H -0.201 1.201 26 H -0.202 1.202 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.227 0.773 39 H 0.092 0.908 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.122 0.878 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.661 -6.335 5.879 15.330 hybrid contribution 0.034 0.088 1.889 1.891 sum -12.627 -6.248 7.768 16.088 Atomic orbital electron populations 1.21808 0.95847 1.01421 1.01865 1.21614 0.95819 0.95906 1.02488 1.21425 0.94429 0.96860 0.98865 0.91003 1.21875 1.00831 1.01040 0.96917 1.20863 0.92803 0.83680 0.98574 0.89718 1.22235 1.02343 1.00242 0.97361 1.46186 1.14777 1.08432 1.69897 1.21146 0.80646 0.92294 0.75592 1.90673 1.55678 1.47909 1.45282 1.20253 0.97002 0.92631 1.01196 1.19005 0.91262 1.14695 0.93445 1.20351 0.93018 0.98932 0.96530 1.20256 0.95081 1.17126 0.94797 1.20596 0.97021 0.99402 0.93520 1.21132 0.92759 1.11569 0.98086 1.17390 0.92366 0.87870 0.91003 1.20437 0.99288 1.35869 0.98844 0.90981 1.26905 0.97044 0.92813 1.01332 1.70449 1.16595 1.17530 1.37751 0.83730 0.75612 0.77333 0.75026 1.19895 1.20059 1.20238 0.92900 0.92438 0.92924 0.91716 0.91459 0.92578 0.92254 0.92459 0.92882 0.91861 0.92097 0.77330 0.90782 0.88774 0.89674 0.89507 0.89432 0.87807 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.67 37.16 0.36 -0.81 16 2 C -0.12 -1.08 5.19 -26.73 -0.14 -1.22 16 3 C -0.10 -0.98 2.02 -90.62 -0.18 -1.16 16 4 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.15 -1.61 8.79 37.15 0.33 -1.28 16 6 C 0.15 1.93 2.16 -67.93 -0.15 1.78 16 7 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 8 C -0.16 -1.99 9.14 37.15 0.34 -1.65 16 9 N -0.74 -10.78 4.38 -53.81 -0.24 -11.02 16 10 C 0.52 10.13 7.43 -10.99 -0.08 10.05 16 11 O -0.52 -12.68 15.70 5.56 0.09 -12.60 16 12 C -0.07 -1.41 5.18 -29.04 -0.15 -1.56 16 13 C -0.18 -4.43 4.43 -103.92 -0.46 -4.89 16 14 C -0.07 -1.63 9.66 -39.66 -0.38 -2.02 16 15 C -0.25 -5.95 10.05 -39.29 -0.39 -6.34 16 16 C -0.09 -2.13 10.02 -39.66 -0.40 -2.52 16 17 C -0.22 -5.79 7.95 -38.87 -0.31 -6.09 16 18 C 0.12 3.13 5.29 -106.82 -0.57 2.57 16 19 C -0.52 -13.74 8.09 -37.74 -0.31 -14.04 16 20 H 0.07 1.89 6.72 -52.48 -0.35 1.53 16 21 C 0.04 1.04 4.94 -17.35 -0.09 0.96 16 22 N -0.80 -21.41 12.32 55.55 0.68 -20.73 16 23 Si 1.06 22.21 30.00 -169.99 -5.10 17.11 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 26 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.57 6.17 -51.93 -0.32 0.25 16 32 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 33 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.66 6.32 -51.93 -0.33 0.33 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.39 4.58 8.39 -40.82 -0.34 4.24 16 39 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 40 H 0.09 1.85 7.05 -51.93 -0.37 1.48 16 41 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 43 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 44 H 0.10 2.85 6.51 -52.48 -0.34 2.51 16 45 H 0.30 8.20 6.69 -40.82 -0.27 7.93 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -30.68 358.96 -8.96 -39.64 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -7.23 Total: 10.44 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: -2.58 Total: -28.25 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.45 Total: -31.75 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.09 Total: -12.60 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.10 Total: 17.11 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.68 -8.96 -39.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776852043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.032 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds