Wall clock time and date at job start Tue Mar 31 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47557 * 2 1 4 4 H 1.09006 * 109.46584 * 55.00056 * 3 2 1 5 5 C 1.52995 * 109.47293 * 295.00197 * 3 2 1 6 6 C 1.53003 * 109.47501 * 174.99721 * 3 2 1 7 7 H 1.09004 * 109.46401 * 60.00012 * 6 3 2 8 8 C 1.52995 * 109.47235 * 300.00511 * 6 3 2 9 9 N 1.46496 * 109.47035 * 180.02562 * 6 3 2 10 10 C 1.34776 * 119.99822 * 205.00209 * 9 6 3 11 11 O 1.21281 * 120.00092 * 0.02562 * 10 9 6 12 12 C 1.50694 * 120.00222 * 180.02562 * 10 9 6 13 13 C 1.50705 * 109.47406 * 179.97438 * 12 10 9 14 14 C 1.37627 * 120.12919 * 264.97763 * 13 12 10 15 15 C 1.38620 * 120.25010 * 179.97438 * 14 13 12 16 16 C 1.38658 * 120.49737 * 0.05065 * 15 14 13 17 17 C 1.37590 * 120.24831 * 359.66497 * 16 15 14 18 18 C 1.40694 * 120.12421 * 85.00097 * 13 12 10 19 19 C 1.41401 * 120.24909 * 359.97438 * 18 13 12 20 20 H 1.08003 * 119.99476 * 334.63066 * 19 18 13 21 21 C 1.39937 * 120.00298 * 154.63105 * 19 18 13 22 22 N 1.30822 * 120.00325 * 334.67536 * 21 19 18 23 23 Si 1.86803 * 120.00022 * 154.67422 * 21 19 18 24 24 H 1.48500 * 109.47132 * 179.97438 * 23 21 19 25 25 H 1.48492 * 109.47144 * 300.00104 * 23 21 19 26 26 H 1.48509 * 109.46903 * 60.00147 * 23 21 19 27 27 H 1.08999 * 109.46956 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47062 * 59.99811 * 1 2 3 29 29 H 1.08992 * 109.47189 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47375 * 239.99821 * 2 1 3 31 31 H 1.09004 * 109.47060 * 119.99897 * 2 1 3 32 32 H 1.08999 * 109.47165 * 59.99328 * 5 3 2 33 33 H 1.08992 * 109.47627 * 179.97438 * 5 3 2 34 34 H 1.09004 * 109.47018 * 300.00238 * 5 3 2 35 35 H 1.09006 * 109.47190 * 299.99873 * 8 6 3 36 36 H 1.09004 * 109.47637 * 59.99175 * 8 6 3 37 37 H 1.08999 * 109.47165 * 180.02562 * 8 6 3 38 38 H 0.96995 * 120.00757 * 24.99936 * 9 6 3 39 39 H 1.09001 * 109.47466 * 60.00140 * 12 10 9 40 40 H 1.09005 * 109.47000 * 300.00047 * 12 10 9 41 41 H 1.08002 * 119.87657 * 0.02562 * 14 13 12 42 42 H 1.07996 * 119.75155 * 180.02562 * 15 14 13 43 43 H 1.07998 * 119.87354 * 179.97438 * 16 15 14 44 44 H 1.08005 * 120.12571 * 180.29985 * 17 16 15 45 45 H 0.97005 * 119.99423 * 354.19309 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6354 2.1266 -1.3073 6 6 3.5649 1.4443 0.1258 7 1 3.9995 0.9052 -0.7161 8 6 3.9697 0.7602 1.4331 9 7 4.0532 2.8255 0.1264 10 6 5.3119 3.0954 -0.2727 11 8 6.0402 2.1949 -0.6327 12 6 5.8144 4.5161 -0.2716 13 6 7.2409 4.5448 -0.7570 14 6 8.2787 4.5255 0.1467 15 6 9.5917 4.5513 -0.2971 16 6 9.8752 4.5979 -1.6536 17 6 8.8536 4.6120 -2.5751 18 6 7.5167 4.5920 -2.1358 19 6 6.4586 4.6122 -3.0736 20 1 5.4978 4.1936 -2.8127 21 6 6.6563 5.1745 -4.3397 22 7 7.5753 6.0894 -4.5129 23 14 5.6081 4.6187 -5.7826 24 1 6.0120 5.3620 -7.0031 25 1 5.8007 3.1629 -6.0026 26 1 4.1779 4.8901 -5.4889 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5491 2.1252 -1.3969 33 1 1.9983 3.1543 -1.3071 34 1 2.0699 1.5875 -2.1491 35 1 3.5350 1.2992 2.2750 36 1 3.6062 -0.2675 1.4331 37 1 5.0559 0.7619 1.5229 38 1 3.4707 3.5458 0.4139 39 1 5.7675 4.9173 0.7408 40 1 5.1933 5.1217 -0.9316 41 1 8.0694 4.4892 1.2056 42 1 10.3998 4.5354 0.4191 43 1 10.9018 4.6181 -1.9881 44 1 9.0768 4.6434 -3.6314 45 1 8.0616 6.4387 -3.7498 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776852043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:09 Heat of formation + Delta-G solvation = -71.248573 kcal Electronic energy + Delta-G solvation = -23374.176133 eV Core-core repulsion = 20161.075175 eV Total energy + Delta-G solvation = -3213.100958 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.01293 -39.55711 -38.25503 -35.73604 -34.86126 -33.56490 -31.37146 -31.08815 -30.22786 -28.39957 -26.78618 -25.36121 -23.76839 -22.82420 -22.00187 -21.33884 -20.65316 -19.58908 -17.83664 -17.34176 -16.68107 -16.60284 -15.97275 -15.87582 -15.72343 -15.33816 -14.97302 -14.68722 -14.52735 -14.22161 -14.10900 -13.87217 -13.57873 -13.41787 -13.04021 -12.96661 -12.75893 -12.67460 -12.60389 -12.50441 -12.27371 -12.24051 -11.99548 -11.64768 -11.49314 -11.43959 -11.34741 -11.21228 -10.84824 -10.70459 -9.96640 -9.44547 -9.42038 -9.05334 -6.39069 0.91770 0.98820 1.45533 1.61051 1.75036 1.84872 2.30252 2.37423 2.72273 3.59365 3.68710 3.93381 4.01401 4.09059 4.29210 4.34017 4.36468 4.44440 4.49594 4.57023 4.58823 4.65077 4.71977 4.72894 4.78049 4.86818 4.96784 5.00873 5.05419 5.07914 5.16246 5.20625 5.22640 5.33023 5.34750 5.50095 5.50570 5.54343 5.68599 5.80434 5.84578 5.99234 6.05408 6.30003 6.45784 6.71361 6.87564 7.02603 7.48011 8.08701 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.014383 B = 0.005125 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.340408 B = 5462.161791 C = 7024.010774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.086 4.086 4 H 0.095 0.905 5 C -0.150 4.150 6 C 0.143 3.857 7 H 0.049 0.951 8 C -0.157 4.157 9 N -0.717 5.717 10 C 0.518 3.482 11 O -0.577 6.577 12 C -0.071 4.071 13 C -0.188 4.188 14 C -0.082 4.082 15 C -0.251 4.251 16 C -0.098 4.098 17 C -0.246 4.246 18 C 0.086 3.914 19 C -0.540 4.540 20 H 0.068 0.932 21 C 0.005 3.995 22 N -0.820 5.820 23 Si 1.105 2.895 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.252 1.252 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.028 0.972 38 H 0.411 0.589 39 H 0.112 0.888 40 H 0.094 0.906 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.082 0.918 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.291 -6.210 9.811 19.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.104 4.104 4 H 0.113 0.887 5 C -0.208 4.208 6 C 0.038 3.962 7 H 0.067 0.933 8 C -0.215 4.215 9 N -0.371 5.371 10 C 0.305 3.695 11 O -0.456 6.456 12 C -0.110 4.110 13 C -0.189 4.189 14 C -0.100 4.100 15 C -0.270 4.270 16 C -0.116 4.116 17 C -0.265 4.265 18 C 0.084 3.916 19 C -0.569 4.569 20 H 0.086 0.914 21 C -0.211 4.211 22 N -0.443 5.443 23 Si 0.923 3.077 24 H -0.193 1.193 25 H -0.202 1.202 26 H -0.175 1.175 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.048 0.952 38 H 0.248 0.752 39 H 0.130 0.870 40 H 0.112 0.888 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.127 0.873 44 H 0.101 0.899 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.961 -6.605 7.923 18.172 hybrid contribution 0.783 0.145 1.419 1.627 sum -14.178 -6.461 9.342 18.167 Atomic orbital electron populations 1.21785 0.94442 1.02105 1.02306 1.21616 0.96968 0.94812 1.02364 1.21376 0.91691 0.98083 0.99285 0.88680 1.21893 1.02074 1.00209 0.96591 1.21002 0.94884 0.82282 0.98020 0.93301 1.22170 1.00366 1.01713 0.97219 1.45970 1.13266 1.09928 1.67898 1.21036 0.81716 0.91488 0.75218 1.90656 1.57547 1.49212 1.48147 1.20281 0.94501 0.93129 1.03104 1.19514 0.94030 1.12648 0.92751 1.20803 0.92809 0.98183 0.98204 1.20711 0.96355 1.15088 0.94833 1.20892 0.97638 0.99069 0.94003 1.21147 0.93878 1.13902 0.97620 1.17775 0.92537 0.88693 0.92643 1.20537 0.99294 1.37099 0.99954 0.91404 1.28186 0.97325 0.91934 1.03626 1.70552 1.17957 1.18990 1.36851 0.83168 0.75536 0.76688 0.72333 1.19308 1.20202 1.17545 0.91845 0.92561 0.92228 0.92931 0.90619 0.90502 0.93074 0.94469 0.90675 0.89932 0.95247 0.75196 0.87006 0.88818 0.86357 0.86350 0.87299 0.89930 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.67 71.98 0.70 -1.15 16 2 C -0.12 -1.87 5.19 30.59 0.16 -1.71 16 3 C -0.09 -1.53 2.02 -10.79 -0.02 -1.55 16 4 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 5 C -0.15 -3.00 8.79 71.98 0.63 -2.37 16 6 C 0.14 3.63 2.16 44.99 0.10 3.72 16 7 H 0.05 1.62 7.58 -2.39 -0.02 1.60 16 8 C -0.16 -3.54 9.14 71.98 0.66 -2.88 16 9 N -0.72 -19.96 4.38 -442.55 -1.94 -21.90 16 10 C 0.52 20.16 7.43 87.66 0.65 20.81 16 11 O -0.58 -28.72 15.70 -3.03 -0.05 -28.76 16 12 C -0.07 -2.73 5.18 29.10 0.15 -2.58 16 13 C -0.19 -9.12 4.43 -19.41 -0.09 -9.21 16 14 C -0.08 -3.70 9.66 22.22 0.21 -3.49 16 15 C -0.25 -11.43 10.05 22.46 0.23 -11.20 16 16 C -0.10 -4.82 10.02 22.22 0.22 -4.60 16 17 C -0.25 -13.68 7.95 22.73 0.18 -13.50 16 18 C 0.09 4.77 5.29 -21.29 -0.11 4.66 16 19 C -0.54 -29.74 8.09 23.46 0.19 -29.55 16 20 H 0.07 3.67 6.72 -2.91 -0.02 3.65 16 21 C 0.01 0.29 4.94 85.25 0.42 0.71 16 22 N -0.82 -45.61 12.32 21.82 0.27 -45.34 16 23 Si 1.10 45.45 30.00 68.60 2.06 47.51 16 24 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16 25 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 26 H -0.25 -9.24 7.11 99.48 0.71 -8.53 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.71 6.56 -2.39 -0.02 0.70 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.08 1.06 6.17 -2.39 -0.01 1.05 16 32 H 0.08 1.21 6.56 -2.39 -0.02 1.20 16 33 H 0.05 1.09 7.45 -2.39 -0.02 1.07 16 34 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.08 1.54 6.32 -2.39 -0.02 1.52 16 37 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.41 8.52 8.39 -92.71 -0.78 7.74 16 39 H 0.11 3.41 8.05 -2.39 -0.02 3.39 16 40 H 0.09 3.63 7.05 -2.38 -0.02 3.62 16 41 H 0.12 4.50 8.06 -2.91 -0.02 4.47 16 42 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 43 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 44 H 0.08 4.82 6.51 -2.91 -0.02 4.80 16 45 H 0.28 16.39 6.69 -92.70 -0.62 15.77 16 Total: -1.00 -70.08 358.96 4.96 -65.12 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: 0.34 Total: 37.25 kcal Atomic # 6 Polarization: -58.16 SS G_CDS: 4.28 Total: -53.88 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: -1.67 Total: -67.24 kcal Atomic # 8 Polarization: -28.72 SS G_CDS: -0.05 Total: -28.76 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.06 Total: 47.51 kcal Total: -70.08 4.96 -65.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776852043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.128 kcal (2) G-P(sol) polarization free energy of solvation -70.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds