Wall clock time and date at job start Tue Mar 31 2020 05:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.47140 * 2 1 4 4 H 1.09003 * 109.46918 * 304.99787 * 3 2 1 5 5 C 1.53002 * 109.47604 * 64.99638 * 3 2 1 6 6 C 1.52991 * 109.47134 * 184.99966 * 3 2 1 7 7 N 1.46507 * 109.47266 * 174.99832 * 6 3 2 8 8 C 1.46501 * 119.99673 * 269.99674 * 7 6 3 9 9 C 1.34773 * 120.00266 * 90.00082 * 7 6 3 10 10 O 1.21282 * 119.99503 * 359.97438 * 9 7 6 11 11 C 1.50694 * 120.00092 * 180.02562 * 9 7 6 12 12 C 1.50707 * 109.47262 * 179.97438 * 11 9 7 13 13 C 1.37643 * 120.12639 * 265.30991 * 12 11 9 14 14 C 1.38615 * 120.24281 * 180.31829 * 13 12 11 15 15 C 1.38658 * 120.50051 * 359.66907 * 14 13 12 16 16 C 1.37593 * 120.25264 * 0.02562 * 15 14 13 17 17 C 1.40688 * 120.12508 * 84.99750 * 12 11 9 18 18 C 1.41401 * 120.24844 * 359.97438 * 17 12 11 19 19 H 1.07999 * 119.99289 * 334.28466 * 18 17 12 20 20 C 1.39937 * 120.00394 * 154.28925 * 18 17 12 21 21 N 1.30829 * 120.00181 * 334.60180 * 20 18 17 22 22 Si 1.86801 * 120.00083 * 154.60226 * 20 18 17 23 23 H 1.48505 * 109.47160 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47100 * 300.00105 * 22 20 18 25 25 H 1.48502 * 109.47051 * 60.00179 * 22 20 18 26 26 H 1.09002 * 109.47042 * 300.00515 * 1 2 3 27 27 H 1.08996 * 109.46863 * 60.00206 * 1 2 3 28 28 H 1.08997 * 109.46595 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47250 * 239.99341 * 2 1 3 30 30 H 1.09003 * 109.46779 * 119.99401 * 2 1 3 31 31 H 1.08993 * 109.47036 * 180.02562 * 5 3 2 32 32 H 1.09010 * 109.46747 * 300.00370 * 5 3 2 33 33 H 1.08997 * 109.47197 * 59.99857 * 5 3 2 34 34 H 1.09005 * 109.47510 * 54.99612 * 6 3 2 35 35 H 1.08998 * 109.47322 * 294.99355 * 6 3 2 36 36 H 1.08995 * 109.47181 * 269.99950 * 8 7 6 37 37 H 1.09006 * 109.47212 * 30.00135 * 8 7 6 38 38 H 1.09002 * 109.46759 * 149.99698 * 8 7 6 39 39 H 1.09001 * 109.46892 * 59.99768 * 11 9 7 40 40 H 1.08991 * 109.47294 * 299.99778 * 11 9 7 41 41 H 1.07998 * 119.87840 * 0.02562 * 13 12 11 42 42 H 1.07996 * 119.74749 * 179.68975 * 14 13 12 43 43 H 1.08000 * 119.87393 * 180.02562 * 15 14 13 44 44 H 1.07996 * 120.12941 * 180.02562 * 16 15 14 45 45 H 0.96998 * 119.99709 * 354.17607 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1267 1.3073 6 6 3.5648 1.4443 -0.1257 7 7 4.0433 2.8238 -0.2458 8 6 4.1786 3.4396 -1.5682 9 6 4.3591 3.5263 0.8601 10 8 4.2467 3.0166 1.9549 11 6 4.8507 4.9454 0.7366 12 6 5.1308 5.5014 2.1091 13 6 4.1691 6.2339 2.7672 14 6 4.4265 6.7519 4.0269 15 6 5.6503 6.5336 4.6410 16 6 6.6241 5.7990 4.0044 17 6 6.3739 5.2681 2.7252 18 6 7.3669 4.5111 2.0617 19 1 7.0824 3.7814 1.3181 20 6 8.7180 4.7073 2.3686 21 7 9.1193 5.8553 2.8510 22 14 9.9487 3.3300 2.0896 23 1 11.3034 3.7879 2.4904 24 1 9.5636 2.1495 2.9039 25 1 9.9578 2.9580 0.6519 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.9983 3.1544 1.3070 32 1 0.5489 2.1253 1.3968 33 1 2.0699 1.5877 2.1492 34 1 3.8572 0.8799 -1.0113 35 1 4.0030 0.9837 0.7597 36 1 5.1798 3.2515 -1.9559 37 1 3.4401 3.0111 -2.2459 38 1 4.0165 4.5144 -1.4868 39 1 4.0889 5.5525 0.2475 40 1 5.7651 4.9629 0.1436 41 1 3.2121 6.4096 2.2984 42 1 3.6679 7.3297 4.5339 43 1 5.8399 6.9416 5.6228 44 1 7.5765 5.6298 4.4847 45 1 8.4981 6.5974 2.9169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776907995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:34 Heat of formation + Delta-G solvation = -43.011871 kcal Electronic energy + Delta-G solvation = -23683.095132 eV Core-core repulsion = 20471.218610 eV Total energy + Delta-G solvation = -3211.876522 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.68109 -37.74235 -36.46290 -34.53441 -33.80200 -31.81985 -29.98016 -29.16425 -27.50637 -26.72362 -25.77913 -24.82311 -23.18125 -20.89209 -20.38504 -19.81413 -18.59667 -17.62538 -16.51596 -15.84067 -15.52734 -15.01571 -14.80331 -14.47089 -14.10351 -13.89503 -13.55375 -13.31334 -13.05697 -12.71379 -12.55213 -12.27384 -12.19036 -12.00299 -11.90107 -11.84070 -11.63224 -11.24839 -11.17494 -11.06896 -10.88827 -10.77959 -10.58059 -10.51724 -10.42078 -10.35529 -9.59121 -9.33098 -9.07139 -8.90954 -8.25948 -7.50330 -7.45404 -7.07521 -4.36985 2.79908 2.89738 3.18214 3.31951 3.35038 3.40428 3.46593 4.05918 4.63250 4.81577 4.84856 4.94064 5.14015 5.24509 5.38154 5.46801 5.49733 5.57612 5.65771 5.69682 5.78104 5.78584 5.87031 5.94630 6.02756 6.03687 6.06970 6.14555 6.18933 6.22231 6.37894 6.40580 6.41238 6.63303 6.73016 6.90197 7.05151 7.26095 7.47108 7.70616 7.85367 7.88290 7.92316 8.00453 8.26260 8.39986 8.83897 8.88390 8.97876 10.11824 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.005080 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.332085 B = 5510.616226 C = 6533.337418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.105 4.105 4 H 0.065 0.935 5 C -0.138 4.138 6 C 0.120 3.880 7 N -0.630 5.630 8 C 0.083 3.917 9 C 0.517 3.483 10 O -0.514 6.514 11 C -0.069 4.069 12 C -0.183 4.183 13 C -0.069 4.069 14 C -0.253 4.253 15 C -0.087 4.087 16 C -0.216 4.216 17 C 0.117 3.883 18 C -0.516 4.516 19 H 0.071 0.929 20 C 0.041 3.959 21 N -0.800 5.800 22 Si 1.060 2.940 23 H -0.274 1.274 24 H -0.275 1.275 25 H -0.277 1.277 26 H 0.057 0.943 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.958 -6.916 -9.713 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.125 4.125 4 H 0.084 0.916 5 C -0.195 4.195 6 C -0.003 4.003 7 N -0.367 5.367 8 C -0.061 4.061 9 C 0.306 3.694 10 O -0.388 6.388 11 C -0.108 4.108 12 C -0.185 4.185 13 C -0.087 4.087 14 C -0.272 4.272 15 C -0.105 4.105 16 C -0.235 4.235 17 C 0.114 3.886 18 C -0.545 4.545 19 H 0.089 0.911 20 C -0.181 4.181 21 N -0.423 5.423 22 Si 0.884 3.116 23 H -0.199 1.199 24 H -0.201 1.201 25 H -0.203 1.203 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.122 0.878 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.375 -7.539 -8.890 14.353 hybrid contribution -1.724 0.451 -0.280 1.804 sum -10.099 -7.088 -9.170 15.373 Atomic orbital electron populations 1.21797 0.95953 1.01225 1.01892 1.21511 0.95885 0.96253 1.01895 1.21555 0.95879 0.96020 0.99005 0.91646 1.21817 0.99623 1.01327 0.96748 1.21436 0.93281 0.83139 1.02435 1.47978 1.68008 1.13920 1.06750 1.21702 1.01208 0.98948 0.84248 1.21124 0.76198 0.88715 0.83384 1.90674 1.51154 1.70780 1.26152 1.20278 1.01130 0.91181 0.98234 1.19035 0.97263 1.06969 0.95200 1.20337 0.96135 0.97503 0.94772 1.20249 0.97911 1.11057 0.97992 1.20595 0.94025 0.98308 0.97606 1.21133 0.99762 1.06356 0.96274 1.17381 0.91532 0.89109 0.90572 1.20432 0.92493 1.19878 1.21650 0.91054 1.26909 0.99081 1.00235 0.91858 1.70451 1.40826 1.02001 1.29053 0.83719 0.75492 0.74900 0.77519 1.19892 1.20062 1.20279 0.92403 0.93013 0.93041 0.92226 0.91789 0.92562 0.93662 0.92203 0.91394 0.90018 0.92873 0.91823 0.91023 0.90900 0.88838 0.89753 0.89533 0.89446 0.87804 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.67 37.16 0.36 -1.01 16 2 C -0.12 -1.18 5.40 -26.73 -0.14 -1.33 16 3 C -0.10 -1.27 2.59 -90.62 -0.24 -1.50 16 4 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 5 C -0.14 -2.02 7.69 37.16 0.29 -1.73 16 6 C 0.12 1.63 5.00 -4.04 -0.02 1.61 16 7 N -0.63 -9.65 2.76 -181.57 -0.50 -10.15 16 8 C 0.08 0.94 10.24 59.85 0.61 1.55 16 9 C 0.52 10.22 5.89 -10.99 -0.06 10.16 16 10 O -0.51 -12.21 13.82 5.56 0.08 -12.13 16 11 C -0.07 -1.37 3.73 -29.03 -0.11 -1.48 16 12 C -0.18 -4.44 4.43 -103.91 -0.46 -4.90 16 13 C -0.07 -1.61 9.66 -39.66 -0.38 -1.99 16 14 C -0.25 -5.91 10.05 -39.29 -0.39 -6.30 16 15 C -0.09 -2.12 10.02 -39.66 -0.40 -2.52 16 16 C -0.22 -5.76 7.95 -38.87 -0.31 -6.07 16 17 C 0.12 3.14 5.30 -106.82 -0.57 2.57 16 18 C -0.52 -13.78 8.08 -37.74 -0.30 -14.08 16 19 H 0.07 1.89 6.73 -52.49 -0.35 1.53 16 20 C 0.04 1.05 4.94 -17.34 -0.09 0.96 16 21 N -0.80 -21.41 12.31 55.55 0.68 -20.73 16 22 Si 1.06 22.24 30.00 -169.99 -5.10 17.14 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.26 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 26 H 0.06 0.56 6.56 -51.93 -0.34 0.22 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.97 6.06 -51.93 -0.31 0.65 16 32 H 0.04 0.58 6.57 -51.92 -0.34 0.24 16 33 H 0.06 0.98 8.00 -51.93 -0.42 0.57 16 34 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 35 H 0.08 1.31 7.42 -51.93 -0.39 0.92 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 38 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 39 H 0.07 1.24 7.31 -51.93 -0.38 0.86 16 40 H 0.09 1.88 7.02 -51.93 -0.36 1.51 16 41 H 0.08 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 43 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 44 H 0.10 2.85 6.49 -52.49 -0.34 2.51 16 45 H 0.30 8.20 6.68 -40.82 -0.27 7.92 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -30.38 355.34 -8.98 -39.36 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -7.28 Total: 7.21 kcal Atomic # 6 Polarization: -23.84 SS G_CDS: -2.22 Total: -26.06 kcal Atomic # 7 Polarization: -31.06 SS G_CDS: 0.18 Total: -30.88 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.08 Total: -12.13 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.10 Total: 17.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.38 -8.98 -39.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776907995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.650 kcal (2) G-P(sol) polarization free energy of solvation -30.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds