Wall clock time and date at job start Tue Mar 31 2020 05:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.47140 * 2 1 4 4 H 1.09003 * 109.46918 * 304.99787 * 3 2 1 5 5 C 1.53002 * 109.47604 * 64.99638 * 3 2 1 6 6 C 1.52991 * 109.47134 * 184.99966 * 3 2 1 7 7 N 1.46507 * 109.47266 * 174.99832 * 6 3 2 8 8 C 1.46501 * 119.99673 * 269.99674 * 7 6 3 9 9 C 1.34773 * 120.00266 * 90.00082 * 7 6 3 10 10 O 1.21282 * 119.99503 * 359.97438 * 9 7 6 11 11 C 1.50694 * 120.00092 * 180.02562 * 9 7 6 12 12 C 1.50707 * 109.47262 * 179.97438 * 11 9 7 13 13 C 1.37643 * 120.12639 * 265.30991 * 12 11 9 14 14 C 1.38615 * 120.24281 * 180.31829 * 13 12 11 15 15 C 1.38658 * 120.50051 * 359.66907 * 14 13 12 16 16 C 1.37593 * 120.25264 * 0.02562 * 15 14 13 17 17 C 1.40688 * 120.12508 * 84.99750 * 12 11 9 18 18 C 1.41401 * 120.24844 * 359.97438 * 17 12 11 19 19 H 1.07999 * 119.99289 * 334.28466 * 18 17 12 20 20 C 1.39937 * 120.00394 * 154.28925 * 18 17 12 21 21 N 1.30829 * 120.00181 * 334.60180 * 20 18 17 22 22 Si 1.86801 * 120.00083 * 154.60226 * 20 18 17 23 23 H 1.48505 * 109.47160 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47100 * 300.00105 * 22 20 18 25 25 H 1.48502 * 109.47051 * 60.00179 * 22 20 18 26 26 H 1.09002 * 109.47042 * 300.00515 * 1 2 3 27 27 H 1.08996 * 109.46863 * 60.00206 * 1 2 3 28 28 H 1.08997 * 109.46595 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47250 * 239.99341 * 2 1 3 30 30 H 1.09003 * 109.46779 * 119.99401 * 2 1 3 31 31 H 1.08993 * 109.47036 * 180.02562 * 5 3 2 32 32 H 1.09010 * 109.46747 * 300.00370 * 5 3 2 33 33 H 1.08997 * 109.47197 * 59.99857 * 5 3 2 34 34 H 1.09005 * 109.47510 * 54.99612 * 6 3 2 35 35 H 1.08998 * 109.47322 * 294.99355 * 6 3 2 36 36 H 1.08995 * 109.47181 * 269.99950 * 8 7 6 37 37 H 1.09006 * 109.47212 * 30.00135 * 8 7 6 38 38 H 1.09002 * 109.46759 * 149.99698 * 8 7 6 39 39 H 1.09001 * 109.46892 * 59.99768 * 11 9 7 40 40 H 1.08991 * 109.47294 * 299.99778 * 11 9 7 41 41 H 1.07998 * 119.87840 * 0.02562 * 13 12 11 42 42 H 1.07996 * 119.74749 * 179.68975 * 14 13 12 43 43 H 1.08000 * 119.87393 * 180.02562 * 15 14 13 44 44 H 1.07996 * 120.12941 * 180.02562 * 16 15 14 45 45 H 0.96998 * 119.99709 * 354.17607 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 1.6353 2.1267 1.3073 6 6 3.5648 1.4443 -0.1257 7 7 4.0433 2.8238 -0.2458 8 6 4.1786 3.4396 -1.5682 9 6 4.3591 3.5263 0.8601 10 8 4.2467 3.0166 1.9549 11 6 4.8507 4.9454 0.7366 12 6 5.1308 5.5014 2.1091 13 6 4.1691 6.2339 2.7672 14 6 4.4265 6.7519 4.0269 15 6 5.6503 6.5336 4.6410 16 6 6.6241 5.7990 4.0044 17 6 6.3739 5.2681 2.7252 18 6 7.3669 4.5111 2.0617 19 1 7.0824 3.7814 1.3181 20 6 8.7180 4.7073 2.3686 21 7 9.1193 5.8553 2.8510 22 14 9.9487 3.3300 2.0896 23 1 11.3034 3.7879 2.4904 24 1 9.5636 2.1495 2.9039 25 1 9.9578 2.9580 0.6519 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8901 31 1 1.9983 3.1544 1.3070 32 1 0.5489 2.1253 1.3968 33 1 2.0699 1.5877 2.1492 34 1 3.8572 0.8799 -1.0113 35 1 4.0030 0.9837 0.7597 36 1 5.1798 3.2515 -1.9559 37 1 3.4401 3.0111 -2.2459 38 1 4.0165 4.5144 -1.4868 39 1 4.0889 5.5525 0.2475 40 1 5.7651 4.9629 0.1436 41 1 3.2121 6.4096 2.2984 42 1 3.6679 7.3297 4.5339 43 1 5.8399 6.9416 5.6228 44 1 7.5765 5.6298 4.4847 45 1 8.4981 6.5974 2.9169 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776907995.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:33 Heat of formation + Delta-G solvation = -58.293837 kcal Electronic energy + Delta-G solvation = -23683.757808 eV Core-core repulsion = 20471.218610 eV Total energy + Delta-G solvation = -3212.539198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.12387 -39.50713 -37.69184 -35.75276 -35.73231 -33.52204 -31.11996 -30.95807 -28.96044 -27.95782 -27.14408 -26.58481 -24.22266 -22.82897 -22.02171 -20.92115 -20.07131 -19.48311 -17.91180 -17.18606 -16.92249 -16.61670 -16.11746 -15.96182 -15.80053 -15.43798 -14.85431 -14.49037 -14.31473 -14.13747 -13.95555 -13.85066 -13.60073 -13.52402 -13.10518 -13.01355 -12.97394 -12.80247 -12.64677 -12.54827 -12.24537 -12.13450 -11.98946 -11.89460 -11.56941 -11.47957 -11.41590 -11.21527 -10.84276 -10.63594 -9.49451 -9.44406 -9.42309 -9.05425 -6.39442 0.91576 0.98570 1.45976 1.61439 1.75681 1.85075 2.21695 2.30848 2.71342 3.54880 3.83308 3.90802 4.00318 4.07625 4.25379 4.26894 4.37803 4.43567 4.48580 4.55201 4.57514 4.63905 4.69059 4.70296 4.76612 4.80979 4.91040 4.93059 5.00770 5.04877 5.07714 5.16197 5.20393 5.24087 5.32605 5.49257 5.49776 5.50507 5.74409 5.79971 5.84067 5.98804 6.05070 6.29720 6.44645 6.51937 6.86955 7.02073 7.42777 8.08478 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015653 B = 0.005080 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.332085 B = 5510.616226 C = 6533.337418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.095 4.095 4 H 0.084 0.916 5 C -0.132 4.132 6 C 0.116 3.884 7 N -0.622 5.622 8 C 0.073 3.927 9 C 0.515 3.485 10 O -0.567 6.567 11 C -0.066 4.066 12 C -0.187 4.187 13 C -0.081 4.081 14 C -0.250 4.250 15 C -0.098 4.098 16 C -0.245 4.245 17 C 0.087 3.913 18 C -0.540 4.540 19 H 0.066 0.934 20 C 0.005 3.995 21 N -0.820 5.820 22 Si 1.107 2.893 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.252 1.252 26 H 0.046 0.954 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.028 0.972 32 H 0.061 0.939 33 H 0.030 0.970 34 H 0.102 0.898 35 H 0.049 0.951 36 H 0.060 0.940 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.106 0.894 40 H 0.090 0.910 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.670 -7.728 -12.244 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C -0.115 4.115 4 H 0.102 0.898 5 C -0.189 4.189 6 C -0.006 4.006 7 N -0.356 5.356 8 C -0.069 4.069 9 C 0.304 3.696 10 O -0.445 6.445 11 C -0.106 4.106 12 C -0.189 4.189 13 C -0.099 4.099 14 C -0.269 4.269 15 C -0.116 4.116 16 C -0.264 4.264 17 C 0.084 3.916 18 C -0.569 4.569 19 H 0.084 0.916 20 C -0.211 4.211 21 N -0.444 5.444 22 Si 0.925 3.075 23 H -0.193 1.193 24 H -0.202 1.202 25 H -0.176 1.176 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.121 0.879 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.108 0.892 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.127 0.873 44 H 0.101 0.899 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.111 -8.343 -11.480 17.425 hybrid contribution -1.359 0.754 0.504 1.634 sum -11.471 -7.589 -10.976 17.597 Atomic orbital electron populations 1.21784 0.94964 1.02067 1.01886 1.21488 0.96683 0.94676 1.02331 1.21494 0.94671 0.97397 0.97907 0.89801 1.21736 1.00317 0.99432 0.97402 1.21610 0.94250 0.82200 1.02550 1.47990 1.66238 1.14311 1.07088 1.22020 1.02877 0.99462 0.82517 1.20984 0.76082 0.88681 0.83821 1.90656 1.53769 1.71688 1.28340 1.20269 1.02042 0.92195 0.96060 1.19533 0.96381 1.06009 0.96966 1.20764 0.97206 0.96946 0.94972 1.20693 0.97916 1.10172 0.98091 1.20888 0.94111 0.97964 0.98619 1.21141 0.99829 1.08461 0.97006 1.17759 0.93028 0.89789 0.91000 1.20517 0.93275 1.20542 1.22562 0.91631 1.28206 1.00741 1.01389 0.90728 1.70553 1.40299 1.02298 1.31201 0.83142 0.73528 0.72061 0.78806 1.19286 1.20182 1.17644 0.93442 0.91939 0.91863 0.90138 0.93053 0.95329 0.92035 0.95084 0.87941 0.93277 0.92158 0.88313 0.90423 0.87580 0.89193 0.86647 0.86408 0.87291 0.89901 0.90411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.67 71.99 0.70 -1.60 16 2 C -0.11 -2.01 5.40 30.60 0.17 -1.84 16 3 C -0.10 -2.10 2.59 -10.80 -0.03 -2.12 16 4 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 5 C -0.13 -3.81 7.69 71.98 0.55 -3.26 16 6 C 0.12 2.97 5.00 86.37 0.43 3.40 16 7 N -0.62 -17.99 2.76 -846.76 -2.34 -20.33 16 8 C 0.07 1.42 10.24 127.77 1.31 2.73 16 9 C 0.51 20.30 5.89 87.66 0.52 20.82 16 10 O -0.57 -27.74 13.82 -3.04 -0.04 -27.78 16 11 C -0.07 -2.61 3.73 29.10 0.11 -2.50 16 12 C -0.19 -9.15 4.43 -19.40 -0.09 -9.23 16 13 C -0.08 -3.67 9.66 22.22 0.21 -3.46 16 14 C -0.25 -11.40 10.05 22.46 0.23 -11.18 16 15 C -0.10 -4.81 10.02 22.22 0.22 -4.59 16 16 C -0.24 -13.62 7.95 22.73 0.18 -13.44 16 17 C 0.09 4.82 5.30 -21.29 -0.11 4.71 16 18 C -0.54 -29.87 8.08 23.46 0.19 -29.68 16 19 H 0.07 3.58 6.73 -2.91 -0.02 3.56 16 20 C 0.01 0.29 4.94 85.25 0.42 0.71 16 21 N -0.82 -45.64 12.31 21.82 0.27 -45.37 16 22 Si 1.11 45.47 30.00 68.60 2.06 47.53 16 23 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 24 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.25 -9.28 7.11 99.48 0.71 -8.58 16 26 H 0.05 0.82 6.56 -2.39 -0.02 0.80 16 27 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.03 0.97 6.06 -2.39 -0.01 0.95 16 32 H 0.06 1.52 6.57 -2.38 -0.02 1.51 16 33 H 0.03 1.05 8.00 -2.39 -0.02 1.03 16 34 H 0.10 1.91 8.07 -2.38 -0.02 1.89 16 35 H 0.05 1.59 7.42 -2.39 -0.02 1.57 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.10 1.26 8.07 -2.38 -0.02 1.24 16 38 H 0.08 1.43 6.44 -2.39 -0.02 1.42 16 39 H 0.11 3.38 7.31 -2.39 -0.02 3.36 16 40 H 0.09 3.60 7.02 -2.39 -0.02 3.58 16 41 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 42 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 43 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 44 H 0.08 4.84 6.49 -2.91 -0.02 4.82 16 45 H 0.28 16.40 6.68 -92.71 -0.62 15.78 16 Total: -1.00 -70.06 355.34 6.06 -64.00 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: 1.11 Total: 32.50 kcal Atomic # 6 Polarization: -55.56 SS G_CDS: 5.01 Total: -50.55 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: -2.07 Total: -65.70 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.04 Total: -27.78 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.06 Total: 47.53 kcal Total: -70.06 6.06 -64.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776907995.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.706 kcal (2) G-P(sol) polarization free energy of solvation -70.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds