Wall clock time and date at job start Tue Mar 31 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46993 * 2 1 4 4 H 1.09005 * 109.47272 * 55.00067 * 3 2 1 5 5 C 1.52992 * 109.46995 * 294.99675 * 3 2 1 6 6 C 1.53000 * 109.46669 * 174.99863 * 3 2 1 7 7 N 1.46501 * 109.47087 * 184.99819 * 6 3 2 8 8 C 1.46498 * 120.00443 * 270.00601 * 7 6 3 9 9 C 1.34784 * 119.99968 * 89.99755 * 7 6 3 10 10 O 1.21280 * 119.99871 * 0.02562 * 9 7 6 11 11 C 1.50701 * 119.99906 * 180.02562 * 9 7 6 12 12 C 1.50700 * 109.46813 * 180.02562 * 11 9 7 13 13 C 1.37640 * 120.13180 * 265.30632 * 12 11 9 14 14 C 1.38613 * 120.24862 * 180.32332 * 13 12 11 15 15 C 1.38655 * 120.50174 * 359.67182 * 14 13 12 16 16 C 1.37598 * 120.24576 * 359.97438 * 15 14 13 17 17 C 1.40702 * 120.12495 * 85.00356 * 12 11 9 18 18 C 1.41393 * 120.24620 * 359.97406 * 17 12 11 19 19 H 1.07999 * 119.99787 * 29.07372 * 18 17 12 20 20 C 1.39938 * 120.00244 * 209.07592 * 18 17 12 21 21 N 1.30823 * 120.00241 * 197.10039 * 20 18 17 22 22 Si 1.86803 * 119.99882 * 17.09514 * 20 18 17 23 23 H 1.48495 * 109.47432 * 270.00073 * 22 20 18 24 24 H 1.48498 * 109.46929 * 30.00589 * 22 20 18 25 25 H 1.48504 * 109.46998 * 150.00206 * 22 20 18 26 26 H 1.09001 * 109.47117 * 300.00197 * 1 2 3 27 27 H 1.09001 * 109.47106 * 59.99822 * 1 2 3 28 28 H 1.09004 * 109.47602 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47117 * 239.99803 * 2 1 3 30 30 H 1.09007 * 109.46941 * 119.99794 * 2 1 3 31 31 H 1.08999 * 109.47582 * 60.00429 * 5 3 2 32 32 H 1.09005 * 109.46899 * 180.02562 * 5 3 2 33 33 H 1.09003 * 109.47704 * 299.99824 * 5 3 2 34 34 H 1.08995 * 109.47424 * 65.00070 * 6 3 2 35 35 H 1.09000 * 109.47156 * 304.99572 * 6 3 2 36 36 H 1.09005 * 109.46741 * 270.00052 * 8 7 6 37 37 H 1.09001 * 109.47242 * 29.99066 * 8 7 6 38 38 H 1.08995 * 109.47992 * 149.99628 * 8 7 6 39 39 H 1.08999 * 109.47299 * 60.00523 * 11 9 7 40 40 H 1.08998 * 109.47401 * 299.99992 * 11 9 7 41 41 H 1.08005 * 119.87130 * 0.02562 * 13 12 11 42 42 H 1.08001 * 119.74473 * 179.69460 * 14 13 12 43 43 H 1.08002 * 119.87493 * 180.02562 * 15 14 13 44 44 H 1.08003 * 120.12022 * 180.02562 * 16 15 14 45 45 H 0.97004 * 119.99819 * 355.45620 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1264 -1.3073 6 6 3.5648 1.4442 0.1258 7 7 4.0433 2.8237 0.2458 8 6 4.3865 3.5873 -0.9564 9 6 4.1676 3.3904 1.4624 10 8 3.8839 2.7582 2.4577 11 6 4.6593 4.8096 1.5858 12 6 4.7075 5.1997 3.0406 13 6 3.6449 5.8600 3.6145 14 6 3.6895 6.2258 4.9508 15 6 4.7993 5.9261 5.7259 16 6 5.8701 5.2602 5.1750 17 6 5.8364 4.8847 3.8192 18 6 6.9311 4.2005 3.2423 19 1 7.1478 4.3180 2.1908 20 6 7.7336 3.3710 4.0337 21 7 8.9165 3.0073 3.6096 22 14 7.1157 2.7833 5.6957 23 1 7.5168 3.7547 6.7447 24 1 5.6351 2.6734 5.6627 25 1 7.7040 1.4543 6.0007 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 0.5489 2.1252 -1.3970 32 1 1.9990 3.1540 -1.3075 33 1 2.0699 1.5875 -2.1492 34 1 4.0029 0.9835 -0.7595 35 1 3.8569 0.8800 1.0114 36 1 5.4393 3.4358 -1.1948 37 1 3.7726 3.2472 -1.7904 38 1 4.2030 4.6469 -0.7787 39 1 3.9818 5.4765 1.0528 40 1 5.6580 4.8868 1.1560 41 1 2.7751 6.0981 3.0202 42 1 2.8531 6.7481 5.3915 43 1 4.8231 6.2156 6.7661 44 1 6.7334 5.0274 5.7808 45 1 9.2109 3.2576 2.7199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776907997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:36 Heat of formation + Delta-G solvation = -38.153443 kcal Electronic energy + Delta-G solvation = -23692.154313 eV Core-core repulsion = 20480.488468 eV Total energy + Delta-G solvation = -3211.665845 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.62106 -37.83849 -36.63474 -34.44294 -33.61277 -31.87641 -30.12066 -29.92228 -27.98180 -26.94616 -25.36069 -24.48671 -23.25917 -21.33244 -20.26521 -19.73236 -18.46400 -18.00488 -16.44770 -16.03670 -15.62805 -15.22802 -14.86426 -14.57811 -14.13816 -13.72542 -13.66333 -13.46793 -12.91939 -12.79916 -12.76997 -12.48299 -12.33782 -12.05331 -11.93410 -11.83875 -11.79157 -11.35757 -11.19762 -11.16661 -10.85765 -10.72408 -10.67000 -10.53071 -10.23953 -10.09321 -9.65283 -9.21413 -9.08261 -8.91324 -8.25305 -7.60648 -7.53240 -7.13011 -4.44476 2.63898 2.80308 3.29796 3.36686 3.43456 3.50539 3.71121 4.14273 4.65338 4.80265 4.84644 4.93911 5.13392 5.21549 5.33531 5.44429 5.46521 5.48432 5.54605 5.64931 5.73080 5.77169 5.81077 5.88288 5.93537 5.95641 6.00002 6.04268 6.09803 6.13703 6.25079 6.27427 6.34846 6.38766 6.59165 6.79748 6.91634 7.11649 7.40866 7.56551 7.72114 7.75988 7.86178 7.90961 8.06916 8.45920 8.65769 8.86407 8.89150 10.12663 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.005080 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.144129 B = 5510.217200 C = 5921.709314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.109 4.109 4 H 0.075 0.925 5 C -0.148 4.148 6 C 0.122 3.878 7 N -0.628 5.628 8 C 0.078 3.922 9 C 0.520 3.480 10 O -0.515 6.515 11 C -0.069 4.069 12 C -0.171 4.171 13 C -0.068 4.068 14 C -0.245 4.245 15 C -0.076 4.076 16 C -0.245 4.245 17 C 0.115 3.885 18 C -0.512 4.512 19 H 0.074 0.926 20 C 0.047 3.953 21 N -0.824 5.824 22 Si 1.070 2.930 23 H -0.279 1.279 24 H -0.258 1.258 25 H -0.293 1.293 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.812 -1.935 -10.498 15.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.128 4.128 4 H 0.093 0.907 5 C -0.205 4.205 6 C -0.001 4.001 7 N -0.364 5.364 8 C -0.066 4.066 9 C 0.309 3.691 10 O -0.388 6.388 11 C -0.108 4.108 12 C -0.172 4.172 13 C -0.087 4.087 14 C -0.264 4.264 15 C -0.095 4.095 16 C -0.264 4.264 17 C 0.113 3.887 18 C -0.541 4.541 19 H 0.092 0.908 20 C -0.171 4.171 21 N -0.447 5.447 22 Si 0.897 3.103 23 H -0.207 1.207 24 H -0.182 1.182 25 H -0.221 1.221 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.122 0.878 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.427 -3.167 -8.688 13.937 hybrid contribution -0.271 0.943 -1.632 1.904 sum -10.698 -2.224 -10.320 15.030 Atomic orbital electron populations 1.21796 0.95951 1.01269 1.01845 1.21496 0.95887 0.96153 1.01974 1.21565 0.96203 0.96316 0.98741 0.90688 1.21970 1.01011 1.00708 0.96823 1.21398 0.92924 0.83377 1.02424 1.47916 1.68026 1.13950 1.06548 1.21834 1.00348 0.96744 0.87651 1.20993 0.76725 0.89495 0.81907 1.90669 1.48042 1.63993 1.36142 1.20291 1.01700 0.91963 0.96880 1.19058 0.95701 1.08497 0.93979 1.20411 0.95975 0.97582 0.94715 1.20317 0.99466 1.11823 0.94820 1.20599 0.93936 0.97494 0.97441 1.21121 0.99740 1.08499 0.97016 1.17502 0.90977 0.89230 0.91037 1.20511 1.10621 1.24921 0.98051 0.90829 1.27139 0.91685 0.92813 1.05455 1.70573 1.15217 1.39604 1.19321 0.83649 0.78070 0.75501 0.73092 1.20657 1.18215 1.22077 0.92727 0.92705 0.93010 0.92153 0.91728 0.92804 0.92323 0.93022 0.91353 0.89997 0.93059 0.91234 0.91116 0.90694 0.89076 0.89297 0.89051 0.88907 0.87814 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.67 37.16 0.36 -1.08 16 2 C -0.12 -1.24 5.40 -26.73 -0.14 -1.39 16 3 C -0.11 -1.33 2.59 -90.62 -0.24 -1.57 16 4 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 5 C -0.15 -1.48 7.94 37.15 0.29 -1.19 16 6 C 0.12 1.72 4.90 -4.04 -0.02 1.70 16 7 N -0.63 -9.88 2.70 -181.57 -0.49 -10.37 16 8 C 0.08 0.90 9.31 59.85 0.56 1.46 16 9 C 0.52 10.58 7.67 -10.98 -0.08 10.50 16 10 O -0.52 -12.79 15.61 5.56 0.09 -12.70 16 11 C -0.07 -1.36 3.91 -29.03 -0.11 -1.47 16 12 C -0.17 -4.04 4.43 -103.91 -0.46 -4.50 16 13 C -0.07 -1.52 9.66 -39.66 -0.38 -1.90 16 14 C -0.25 -5.39 10.05 -39.29 -0.39 -5.79 16 15 C -0.08 -1.75 10.02 -39.66 -0.40 -2.15 16 16 C -0.24 -6.22 7.26 -38.87 -0.28 -6.50 16 17 C 0.12 3.03 5.13 -106.83 -0.55 2.48 16 18 C -0.51 -13.97 8.80 -37.75 -0.33 -14.30 16 19 H 0.07 2.01 6.60 -52.49 -0.35 1.67 16 20 C 0.05 1.30 5.42 -17.34 -0.09 1.21 16 21 N -0.82 -22.85 13.65 55.55 0.76 -22.10 16 22 Si 1.07 26.49 24.89 -169.99 -4.23 22.26 16 23 H -0.28 -6.48 6.45 56.52 0.36 -6.12 16 24 H -0.26 -6.67 7.01 56.52 0.40 -6.27 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 31 H 0.05 0.50 6.57 -51.93 -0.34 0.16 16 32 H 0.06 0.60 5.89 -51.93 -0.31 0.30 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.08 1.38 7.42 -51.93 -0.39 0.99 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.64 5.98 -51.93 -0.31 0.33 16 38 H 0.07 0.76 6.44 -51.93 -0.33 0.43 16 39 H 0.07 1.22 7.32 -51.93 -0.38 0.84 16 40 H 0.09 1.80 6.47 -51.93 -0.34 1.47 16 41 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 42 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 44 H 0.10 2.62 4.43 -52.48 -0.23 2.39 16 45 H 0.28 7.56 8.73 -40.82 -0.36 7.20 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -31.26 351.24 -8.02 -39.27 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.15 Total: 2.82 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -2.28 Total: -24.49 kcal Atomic # 7 Polarization: -32.74 SS G_CDS: 0.27 Total: -32.47 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: 0.09 Total: -12.70 kcal Atomic # 14 Polarization: 26.49 SS G_CDS: -4.23 Total: 22.26 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.26 -8.02 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776907997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.121 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds