Wall clock time and date at job start Tue Mar 31 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46993 * 2 1 4 4 H 1.09005 * 109.47272 * 55.00067 * 3 2 1 5 5 C 1.52992 * 109.46995 * 294.99675 * 3 2 1 6 6 C 1.53000 * 109.46669 * 174.99863 * 3 2 1 7 7 N 1.46501 * 109.47087 * 184.99819 * 6 3 2 8 8 C 1.46498 * 120.00443 * 270.00601 * 7 6 3 9 9 C 1.34784 * 119.99968 * 89.99755 * 7 6 3 10 10 O 1.21280 * 119.99871 * 0.02562 * 9 7 6 11 11 C 1.50701 * 119.99906 * 180.02562 * 9 7 6 12 12 C 1.50700 * 109.46813 * 180.02562 * 11 9 7 13 13 C 1.37640 * 120.13180 * 265.30632 * 12 11 9 14 14 C 1.38613 * 120.24862 * 180.32332 * 13 12 11 15 15 C 1.38655 * 120.50174 * 359.67182 * 14 13 12 16 16 C 1.37598 * 120.24576 * 359.97438 * 15 14 13 17 17 C 1.40702 * 120.12495 * 85.00356 * 12 11 9 18 18 C 1.41393 * 120.24620 * 359.97406 * 17 12 11 19 19 H 1.07999 * 119.99787 * 29.07372 * 18 17 12 20 20 C 1.39938 * 120.00244 * 209.07592 * 18 17 12 21 21 N 1.30823 * 120.00241 * 197.10039 * 20 18 17 22 22 Si 1.86803 * 119.99882 * 17.09514 * 20 18 17 23 23 H 1.48495 * 109.47432 * 270.00073 * 22 20 18 24 24 H 1.48498 * 109.46929 * 30.00589 * 22 20 18 25 25 H 1.48504 * 109.46998 * 150.00206 * 22 20 18 26 26 H 1.09001 * 109.47117 * 300.00197 * 1 2 3 27 27 H 1.09001 * 109.47106 * 59.99822 * 1 2 3 28 28 H 1.09004 * 109.47602 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47117 * 239.99803 * 2 1 3 30 30 H 1.09007 * 109.46941 * 119.99794 * 2 1 3 31 31 H 1.08999 * 109.47582 * 60.00429 * 5 3 2 32 32 H 1.09005 * 109.46899 * 180.02562 * 5 3 2 33 33 H 1.09003 * 109.47704 * 299.99824 * 5 3 2 34 34 H 1.08995 * 109.47424 * 65.00070 * 6 3 2 35 35 H 1.09000 * 109.47156 * 304.99572 * 6 3 2 36 36 H 1.09005 * 109.46741 * 270.00052 * 8 7 6 37 37 H 1.09001 * 109.47242 * 29.99066 * 8 7 6 38 38 H 1.08995 * 109.47992 * 149.99628 * 8 7 6 39 39 H 1.08999 * 109.47299 * 60.00523 * 11 9 7 40 40 H 1.08998 * 109.47401 * 299.99992 * 11 9 7 41 41 H 1.08005 * 119.87130 * 0.02562 * 13 12 11 42 42 H 1.08001 * 119.74473 * 179.69460 * 14 13 12 43 43 H 1.08002 * 119.87493 * 180.02562 * 15 14 13 44 44 H 1.08003 * 120.12022 * 180.02562 * 16 15 14 45 45 H 0.97004 * 119.99819 * 355.45620 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6352 2.1264 -1.3073 6 6 3.5648 1.4442 0.1258 7 7 4.0433 2.8237 0.2458 8 6 4.3865 3.5873 -0.9564 9 6 4.1676 3.3904 1.4624 10 8 3.8839 2.7582 2.4577 11 6 4.6593 4.8096 1.5858 12 6 4.7075 5.1997 3.0406 13 6 3.6449 5.8600 3.6145 14 6 3.6895 6.2258 4.9508 15 6 4.7993 5.9261 5.7259 16 6 5.8701 5.2602 5.1750 17 6 5.8364 4.8847 3.8192 18 6 6.9311 4.2005 3.2423 19 1 7.1478 4.3180 2.1908 20 6 7.7336 3.3710 4.0337 21 7 8.9165 3.0073 3.6096 22 14 7.1157 2.7833 5.6957 23 1 7.5168 3.7547 6.7447 24 1 5.6351 2.6734 5.6627 25 1 7.7040 1.4543 6.0007 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 0.5489 2.1252 -1.3970 32 1 1.9990 3.1540 -1.3075 33 1 2.0699 1.5875 -2.1492 34 1 4.0029 0.9835 -0.7595 35 1 3.8569 0.8800 1.0114 36 1 5.4393 3.4358 -1.1948 37 1 3.7726 3.2472 -1.7904 38 1 4.2030 4.6469 -0.7787 39 1 3.9818 5.4765 1.0528 40 1 5.6580 4.8868 1.1560 41 1 2.7751 6.0981 3.0202 42 1 2.8531 6.7481 5.3915 43 1 4.8231 6.2156 6.7661 44 1 6.7334 5.0274 5.7808 45 1 9.2109 3.2576 2.7199 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776907997.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:36 Heat of formation + Delta-G solvation = -55.642107 kcal Electronic energy + Delta-G solvation = -23692.912678 eV Core-core repulsion = 20480.488468 eV Total energy + Delta-G solvation = -3212.424210 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.10101 -39.53153 -37.89689 -35.68578 -35.60167 -33.54832 -32.01706 -30.92795 -29.09311 -28.41688 -26.70236 -26.13200 -24.36795 -23.19295 -21.71374 -20.98344 -20.13184 -19.79847 -17.90043 -17.45844 -16.99310 -16.78677 -16.22272 -15.93359 -15.88637 -15.46222 -15.04357 -14.68518 -14.38226 -14.05063 -13.99993 -13.88209 -13.81457 -13.56218 -13.33646 -13.05661 -12.85865 -12.78572 -12.65291 -12.60993 -12.22132 -12.15437 -11.95706 -11.82965 -11.60038 -11.59035 -11.44546 -11.14238 -10.86775 -10.69155 -9.57074 -9.53513 -9.34650 -9.15525 -6.48929 0.80976 0.89786 1.29680 1.50113 1.71527 1.81182 2.14464 2.18457 2.69615 3.47787 3.80685 3.89465 4.01696 4.05363 4.18464 4.21059 4.33804 4.39741 4.46173 4.50361 4.51931 4.60780 4.63505 4.67456 4.72719 4.83099 4.86853 4.91956 4.92997 4.97872 5.10017 5.12019 5.17099 5.20896 5.24469 5.44654 5.50201 5.52504 5.60632 5.71099 5.82878 5.89015 6.02202 6.18441 6.44779 6.50155 6.73692 6.88221 7.38071 8.06455 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016096 B = 0.005080 C = 0.004727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.144129 B = 5510.217200 C = 5921.709314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.101 4.101 4 H 0.040 0.960 5 C -0.143 4.143 6 C 0.118 3.882 7 N -0.620 5.620 8 C 0.069 3.931 9 C 0.514 3.486 10 O -0.574 6.574 11 C -0.067 4.067 12 C -0.176 4.176 13 C -0.080 4.080 14 C -0.230 4.230 15 C -0.088 4.088 16 C -0.266 4.266 17 C 0.086 3.914 18 C -0.532 4.532 19 H 0.057 0.943 20 C 0.015 3.985 21 N -0.853 5.853 22 Si 1.097 2.903 23 H -0.256 1.256 24 H -0.280 1.280 25 H -0.286 1.286 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.044 0.956 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.086 0.914 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.098 0.902 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.290 -0.899 -11.948 17.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.121 4.121 4 H 0.059 0.941 5 C -0.200 4.200 6 C -0.005 4.005 7 N -0.354 5.354 8 C -0.073 4.073 9 C 0.304 3.696 10 O -0.452 6.452 11 C -0.106 4.106 12 C -0.178 4.178 13 C -0.098 4.098 14 C -0.249 4.249 15 C -0.106 4.106 16 C -0.285 4.285 17 C 0.083 3.917 18 C -0.563 4.563 19 H 0.076 0.924 20 C -0.198 4.198 21 N -0.478 5.478 22 Si 0.922 3.078 23 H -0.181 1.181 24 H -0.206 1.206 25 H -0.213 1.213 26 H 0.059 0.941 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.121 0.879 38 H 0.101 0.899 39 H 0.133 0.867 40 H 0.104 0.896 41 H 0.141 0.859 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.116 0.884 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.894 -2.113 -10.188 16.568 hybrid contribution 0.276 0.737 -1.245 1.472 sum -12.618 -1.376 -11.433 17.082 Atomic orbital electron populations 1.21777 0.94870 1.02083 1.01836 1.21495 0.96808 0.95001 1.02086 1.21456 0.94266 0.97327 0.99025 0.94131 1.21935 1.01848 1.00504 0.95670 1.21554 0.94701 0.82271 1.01977 1.47951 1.66336 1.14625 1.06484 1.22153 1.01270 0.97117 0.86719 1.21084 0.76360 0.89574 0.82618 1.90641 1.51032 1.65209 1.38350 1.20313 1.02434 0.92684 0.95199 1.19553 0.95193 1.07272 0.95753 1.20875 0.96554 0.96922 0.95486 1.20880 0.99763 1.09614 0.94670 1.21003 0.93464 0.96849 0.99304 1.21305 1.00744 1.09494 0.96935 1.17782 0.91798 0.89980 0.92115 1.20460 1.12022 1.26395 0.97399 0.92442 1.27823 0.91777 0.92937 1.07277 1.70611 1.15959 1.41775 1.19467 0.83264 0.76227 0.76150 0.72200 1.18149 1.20586 1.21330 0.94101 0.91310 0.91832 0.90133 0.93553 0.91812 0.92400 0.90960 0.88332 0.93724 0.92764 0.87899 0.89904 0.86709 0.89610 0.85901 0.85327 0.85718 0.88431 0.91251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.67 71.98 0.70 -1.88 16 2 C -0.12 -2.33 5.40 30.59 0.17 -2.16 16 3 C -0.10 -2.38 2.59 -10.80 -0.03 -2.41 16 4 H 0.04 1.23 8.14 -2.38 -0.02 1.22 16 5 C -0.14 -2.39 7.94 71.98 0.57 -1.82 16 6 C 0.12 3.28 4.90 86.38 0.42 3.71 16 7 N -0.62 -19.03 2.70 -846.75 -2.28 -21.32 16 8 C 0.07 1.43 9.31 127.77 1.19 2.62 16 9 C 0.51 21.10 7.67 87.66 0.67 21.77 16 10 O -0.57 -29.57 15.61 -3.03 -0.05 -29.62 16 11 C -0.07 -2.60 3.91 29.10 0.11 -2.48 16 12 C -0.18 -8.24 4.43 -19.40 -0.09 -8.33 16 13 C -0.08 -3.35 9.66 22.22 0.21 -3.14 16 14 C -0.23 -9.37 10.05 22.46 0.23 -9.14 16 15 C -0.09 -3.86 10.02 22.22 0.22 -3.64 16 16 C -0.27 -13.50 7.26 22.73 0.16 -13.33 16 17 C 0.09 4.57 5.13 -21.29 -0.11 4.46 16 18 C -0.53 -30.30 8.80 23.46 0.21 -30.09 16 19 H 0.06 3.33 6.60 -2.91 -0.02 3.31 16 20 C 0.01 0.85 5.42 85.26 0.46 1.31 16 21 N -0.85 -49.39 13.65 21.82 0.30 -49.09 16 22 Si 1.10 55.29 24.89 68.60 1.71 56.99 16 23 H -0.26 -11.72 6.45 99.48 0.64 -11.08 16 24 H -0.28 -14.98 7.01 99.48 0.70 -14.28 16 25 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 26 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 1.00 6.56 -2.39 -0.02 0.99 16 28 H 0.06 0.95 8.14 -2.38 -0.02 0.94 16 29 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.05 1.08 8.14 -2.38 -0.02 1.07 16 31 H 0.06 0.97 6.57 -2.39 -0.02 0.95 16 32 H 0.06 0.99 5.89 -2.38 -0.01 0.97 16 33 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 34 H 0.10 2.13 8.07 -2.39 -0.02 2.11 16 35 H 0.04 1.58 7.42 -2.39 -0.02 1.56 16 36 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.10 1.47 5.98 -2.39 -0.01 1.45 16 38 H 0.08 1.53 6.44 -2.39 -0.02 1.51 16 39 H 0.11 3.43 7.32 -2.39 -0.02 3.41 16 40 H 0.09 3.42 6.47 -2.39 -0.02 3.41 16 41 H 0.12 4.26 8.06 -2.91 -0.02 4.23 16 42 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 43 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 44 H 0.10 4.97 4.43 -2.91 -0.01 4.96 16 45 H 0.28 15.66 8.73 -92.71 -0.81 14.85 16 Total: -1.00 -71.87 351.24 5.63 -66.24 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.85 Total: 21.36 kcal Atomic # 6 Polarization: -49.67 SS G_CDS: 5.10 Total: -44.57 kcal Atomic # 7 Polarization: -68.42 SS G_CDS: -1.99 Total: -70.40 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.05 Total: -29.62 kcal Atomic # 14 Polarization: 55.29 SS G_CDS: 1.71 Total: 56.99 kcal Total: -71.87 5.63 -66.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776907997.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.596 kcal (2) G-P(sol) polarization free energy of solvation -71.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds