Wall clock time and date at job start Tue Mar 31 2020 05:59:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47312 * 2 1 4 4 H 1.08996 * 109.47341 * 54.99330 * 3 2 1 5 5 C 1.50698 * 109.47622 * 174.99793 * 3 2 1 6 6 H 1.07999 * 120.00036 * 119.99422 * 5 3 2 7 7 C 1.37875 * 119.99743 * 300.00280 * 5 3 2 8 8 N 1.31518 * 120.00123 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99952 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.47316 * 59.99737 * 9 7 5 11 11 H 1.48496 * 109.47416 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47371 * 299.99955 * 9 7 5 13 13 N 1.46501 * 109.46873 * 294.99860 * 3 2 1 14 14 C 1.34782 * 119.99935 * 85.00007 * 13 3 2 15 15 O 1.21546 * 119.99864 * 359.97438 * 14 13 3 16 16 C 1.47852 * 119.99708 * 179.97438 * 14 13 3 17 17 C 1.39596 * 120.14550 * 354.88651 * 16 14 13 18 18 C 1.37931 * 119.84952 * 179.97438 * 17 16 14 19 19 C 1.38376 * 120.15118 * 359.97438 * 18 17 16 20 20 C 1.38338 * 120.28950 * 359.97438 * 19 18 17 21 21 C 1.37982 * 120.14809 * 0.29150 * 20 19 18 22 22 C 1.50700 * 120.07914 * 179.70260 * 21 20 19 23 23 C 1.53000 * 109.47008 * 101.34008 * 22 21 20 24 24 C 1.52995 * 109.47024 * 174.12583 * 23 22 21 25 25 C 1.52997 * 109.47327 * 294.13032 * 23 22 21 26 26 H 1.09002 * 109.47368 * 300.00093 * 1 2 3 27 27 H 1.09004 * 109.46850 * 60.00406 * 1 2 3 28 28 H 1.09000 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47418 * 239.99436 * 2 1 3 30 30 H 1.09004 * 109.46850 * 119.99594 * 2 1 3 31 31 H 0.97001 * 119.99393 * 180.02562 * 8 7 5 32 32 H 0.97004 * 120.00146 * 264.99511 * 13 3 2 33 33 H 1.07995 * 120.07406 * 359.95640 * 17 16 14 34 34 H 1.08005 * 119.92285 * 180.02562 * 18 17 16 35 35 H 1.07999 * 119.85670 * 180.02562 * 19 18 17 36 36 H 1.07999 * 119.92941 * 180.02562 * 20 19 18 37 37 H 1.08997 * 109.47394 * 221.34539 * 22 21 20 38 38 H 1.08999 * 109.46829 * 341.34182 * 22 21 20 39 39 H 1.09002 * 109.46880 * 54.12809 * 23 22 21 40 40 H 1.09002 * 109.47108 * 60.00366 * 24 23 22 41 41 H 1.09003 * 109.46849 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.47576 * 300.00066 * 24 23 22 43 43 H 1.09001 * 109.47481 * 55.34005 * 25 23 22 44 44 H 1.09001 * 109.47220 * 175.34505 * 25 23 22 45 45 H 1.08999 * 109.47044 * 295.34171 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4061 0.3374 2.1733 9 14 6.0049 0.8801 1.3813 10 1 6.5004 2.2801 1.3809 11 1 6.3977 0.2168 2.6505 12 1 6.5967 0.1453 0.2345 13 7 1.6525 2.0974 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3413 2.6318 -0.4324 16 6 0.0443 3.3258 -2.6302 17 6 0.9693 3.4590 -3.6672 18 6 0.5980 4.0767 -4.8433 19 6 -0.6883 4.5633 -4.9968 20 6 -1.6101 4.4335 -3.9735 21 6 -1.2501 3.8226 -2.7898 22 6 -2.2536 3.6881 -1.6735 23 6 -2.8091 2.2626 -1.6562 24 6 -3.7155 2.0833 -0.4368 25 6 -3.6156 2.0139 -2.9323 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8292 -0.0603 2.9503 32 1 2.2720 2.1231 -1.9978 33 1 1.9735 3.0796 -3.5488 34 1 1.3126 4.1800 -5.6465 35 1 -0.9741 5.0457 -5.9198 36 1 -2.6126 4.8150 -4.0997 37 1 -1.7682 3.9006 -0.7210 38 1 -3.0691 4.3939 -1.8311 39 1 -1.9843 1.5519 -1.6034 40 1 -4.5403 2.7940 -0.4896 41 1 -4.1116 1.0679 -0.4248 42 1 -3.1410 2.2604 0.4723 43 1 -2.9926 2.2220 -3.8023 44 1 -3.9417 0.9742 -2.9592 45 1 -4.4871 2.6685 -2.9447 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000790892359.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:35 Heat of formation + Delta-G solvation = -49.093216 kcal Electronic energy + Delta-G solvation = -24048.771531 eV Core-core repulsion = 20836.631302 eV Total energy + Delta-G solvation = -3212.140229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.41720 -39.36027 -37.26832 -36.61419 -34.32481 -33.12080 -32.28433 -31.59076 -28.94269 -27.93671 -27.34293 -25.27372 -24.36459 -22.69750 -21.97803 -21.06513 -20.70502 -19.18140 -17.84883 -17.23323 -16.67737 -16.37543 -16.19546 -16.05872 -15.55134 -15.38410 -15.02274 -14.56159 -14.48034 -14.34881 -13.85324 -13.49445 -13.40031 -13.17530 -13.13112 -13.00431 -12.92142 -12.70756 -12.65657 -12.50619 -12.17956 -12.14028 -12.06292 -11.73818 -11.57437 -11.52969 -11.28114 -11.05285 -10.54583 -10.25135 -9.86071 -9.64027 -9.43940 -8.15917 -6.33256 0.03739 0.49142 1.43877 1.45599 1.53361 2.14657 2.36397 2.69116 3.00717 3.13605 3.85637 3.91686 3.99608 4.12202 4.21241 4.26042 4.41177 4.50031 4.52481 4.58018 4.61895 4.76684 4.80476 4.82013 4.89133 4.96379 5.02678 5.07485 5.09782 5.13447 5.21685 5.26866 5.40029 5.43660 5.48270 5.50975 5.55267 5.56683 5.58066 5.68816 5.81131 5.82871 5.96520 6.07780 6.18344 6.74494 7.04145 7.34053 7.62826 8.89069 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018456 B = 0.004998 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.738397 B = 5601.341262 C = 6737.398859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.119 4.119 3 C 0.283 3.717 4 H 0.000 1.000 5 C -0.550 4.550 6 H 0.068 0.932 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.706 5.706 14 C 0.535 3.465 15 O -0.560 6.560 16 C -0.155 4.155 17 C -0.095 4.095 18 C -0.134 4.134 19 C -0.089 4.089 20 C -0.130 4.130 21 C -0.033 4.033 22 C -0.079 4.079 23 C -0.079 4.079 24 C -0.136 4.136 25 C -0.141 4.141 26 H 0.027 0.973 27 H 0.046 0.954 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.265 0.735 32 H 0.397 0.603 33 H 0.129 0.871 34 H 0.154 0.846 35 H 0.159 0.841 36 H 0.149 0.851 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.033 0.967 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.983 6.646 -15.634 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.158 4.158 3 C 0.180 3.820 4 H 0.017 0.983 5 C -0.588 4.588 6 H 0.086 0.914 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.190 1.190 13 N -0.355 5.355 14 C 0.324 3.676 15 O -0.441 6.441 16 C -0.158 4.158 17 C -0.114 4.114 18 C -0.151 4.151 19 C -0.107 4.107 20 C -0.148 4.148 21 C -0.034 4.034 22 C -0.116 4.116 23 C -0.098 4.098 24 C -0.193 4.193 25 C -0.198 4.198 26 H 0.046 0.954 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.074 0.926 32 H 0.232 0.768 33 H 0.147 0.853 34 H 0.171 0.829 35 H 0.177 0.823 36 H 0.167 0.833 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.493 6.504 -14.764 19.245 hybrid contribution 1.487 -0.318 0.562 1.621 sum -9.007 6.186 -14.201 17.918 Atomic orbital electron populations 1.21668 0.96760 0.98807 1.00444 1.21768 0.93920 0.99184 1.00952 1.18315 0.93473 0.89035 0.81222 0.98251 1.21543 0.91553 1.39032 1.06692 0.91373 1.25740 1.03220 0.94336 0.94983 1.70044 1.37071 1.38289 1.09792 0.85454 0.79228 0.78411 0.77575 1.19738 1.21112 1.18960 1.46252 1.15548 1.56180 1.17491 1.18786 0.81934 0.78749 0.88139 1.90674 1.51416 1.60332 1.41669 1.19994 0.96320 1.04901 0.94619 1.21531 0.98880 0.97787 0.93217 1.21402 0.97757 0.98701 0.97265 1.21714 0.92709 0.96878 0.99423 1.21313 1.01197 1.00116 0.92176 1.20136 0.92599 0.94436 0.96198 1.20806 0.96257 0.97331 0.97166 1.20888 0.97311 0.95854 0.95739 1.21706 0.99005 1.01460 0.97156 1.21861 0.99941 1.01505 0.96510 0.95359 0.93482 0.94153 0.94596 0.91065 0.92619 0.76779 0.85286 0.82863 0.82306 0.83322 0.91120 0.90275 0.93888 0.91367 0.92853 0.94782 0.92771 0.93070 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.51 71.98 0.61 -4.88 16 2 C -0.12 -6.00 5.45 30.59 0.17 -5.84 16 3 C 0.28 14.75 2.24 44.24 0.10 14.85 16 4 H 0.00 -0.02 7.58 -2.39 -0.02 -0.04 16 5 C -0.55 -29.53 8.73 25.60 0.22 -29.31 16 6 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 7 C 0.02 0.95 5.29 84.65 0.45 1.39 16 8 N -0.91 -52.71 11.29 21.45 0.24 -52.47 16 9 Si 0.97 42.44 29.54 68.60 2.03 44.47 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 12 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 13 N -0.71 -30.34 4.97 -448.98 -2.23 -32.57 16 14 C 0.54 22.03 5.87 86.79 0.51 22.54 16 15 O -0.56 -25.80 9.13 -3.86 -0.04 -25.84 16 16 C -0.16 -5.05 5.84 -20.09 -0.12 -5.17 16 17 C -0.10 -2.51 9.53 22.53 0.21 -2.29 16 18 C -0.13 -2.59 10.03 22.23 0.22 -2.37 16 19 C -0.09 -1.53 10.04 22.33 0.22 -1.30 16 20 C -0.13 -2.67 8.74 22.23 0.19 -2.48 16 21 C -0.03 -0.92 4.44 -19.61 -0.09 -1.01 16 22 C -0.08 -2.31 4.09 29.85 0.12 -2.18 16 23 C -0.08 -2.32 2.32 -10.80 -0.03 -2.35 16 24 C -0.14 -3.80 9.19 71.98 0.66 -3.13 16 25 C -0.14 -3.17 9.05 71.98 0.65 -2.52 16 26 H 0.03 1.38 7.84 -2.39 -0.02 1.36 16 27 H 0.05 2.09 4.42 -2.38 -0.01 2.08 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 4.00 5.95 -2.38 -0.01 3.98 16 31 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 32 H 0.40 14.92 6.60 -92.71 -0.61 14.31 16 33 H 0.13 3.18 6.44 -2.91 -0.02 3.16 16 34 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 35 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.15 2.24 8.03 -2.91 -0.02 2.22 16 37 H 0.07 2.61 5.90 -2.39 -0.01 2.60 16 38 H 0.08 1.87 7.99 -2.39 -0.02 1.85 16 39 H 0.04 1.57 5.38 -2.39 -0.01 1.56 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.10 16 43 H 0.05 1.20 6.58 -2.39 -0.02 1.19 16 44 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -65.30 347.48 4.49 -60.81 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.37 Total: 31.65 kcal Atomic # 6 Polarization: -30.17 SS G_CDS: 4.12 Total: -26.05 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -1.99 Total: -85.04 kcal Atomic # 8 Polarization: -25.80 SS G_CDS: -0.04 Total: -25.84 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -65.30 4.49 -60.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000790892359.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.714 kcal (2) G-P(sol) polarization free energy of solvation -65.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds