Wall clock time and date at job start Tue Mar 31 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46914 * 2 1 4 4 N 1.46500 * 109.47126 * 179.97438 * 3 2 1 5 5 C 1.34774 * 119.99764 * 269.99868 * 4 3 2 6 6 O 1.21285 * 119.99652 * 184.82730 * 5 4 3 7 7 C 1.50700 * 120.00294 * 4.82970 * 5 4 3 8 8 C 1.52993 * 109.47067 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47067 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00343 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00394 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00423 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99882 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47525 * 89.99211 * 13 11 9 15 15 H 1.48499 * 109.47071 * 209.99963 * 13 11 9 16 16 H 1.48506 * 109.46845 * 329.99399 * 13 11 9 17 17 C 1.39921 * 119.99878 * 89.99891 * 4 3 2 18 18 C 1.38876 * 120.07098 * 247.43132 * 17 4 3 19 19 C 1.38114 * 119.93085 * 179.70325 * 18 17 4 20 20 C 1.38278 * 120.06984 * 0.56895 * 19 18 17 21 21 C 1.50696 * 119.93107 * 179.70212 * 20 19 18 22 22 C 1.53001 * 109.47048 * 270.02258 * 21 20 19 23 23 C 1.38285 * 120.14160 * 359.72759 * 20 19 18 24 24 C 1.38120 * 120.06838 * 359.97438 * 23 20 19 25 25 H 1.09004 * 109.46828 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47502 * 300.00205 * 1 2 3 27 27 H 1.09005 * 109.47263 * 60.00346 * 1 2 3 28 28 H 1.08993 * 109.47040 * 239.99880 * 2 1 3 29 29 H 1.09001 * 109.46789 * 119.99548 * 2 1 3 30 30 H 1.08997 * 109.47203 * 59.99612 * 3 2 1 31 31 H 1.09005 * 109.46873 * 299.99893 * 3 2 1 32 32 H 1.08997 * 109.46965 * 300.00032 * 7 5 4 33 33 H 1.09006 * 109.46812 * 59.99978 * 7 5 4 34 34 H 1.09003 * 109.47231 * 299.99382 * 8 7 5 35 35 H 1.08998 * 109.47597 * 60.00257 * 8 7 5 36 36 H 0.97007 * 120.00396 * 180.02562 * 12 11 9 37 37 H 1.08003 * 120.03375 * 359.97438 * 18 17 4 38 38 H 1.08000 * 119.96583 * 180.29691 * 19 18 17 39 39 H 1.08997 * 109.46999 * 30.02632 * 21 20 19 40 40 H 1.09006 * 109.46896 * 150.02846 * 21 20 19 41 41 H 1.08997 * 109.47526 * 300.00051 * 22 21 20 42 42 H 1.08999 * 109.47157 * 60.00429 * 22 21 20 43 43 H 1.09009 * 109.47083 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.97006 * 179.97438 * 23 20 19 45 45 H 1.08002 * 120.03289 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1783 1.4428 1.1681 6 8 5.3879 1.5313 1.1704 7 6 3.4283 1.3331 2.4706 8 6 4.4211 1.3576 3.6344 9 6 3.6711 1.2472 4.9369 10 1 2.5941 1.1672 4.9348 11 6 4.3599 1.2474 6.1312 12 7 3.7054 1.1516 7.2679 13 14 6.2229 1.3850 6.1350 14 1 6.6135 2.8164 6.1951 15 1 6.7695 0.6725 7.3177 16 1 6.7667 0.7752 4.8949 17 6 4.2051 1.4424 -1.2109 18 6 4.9526 0.3326 -1.5824 19 6 5.6376 0.3331 -2.7817 20 6 5.5891 1.4417 -3.6068 21 6 6.3431 1.4415 -4.9115 22 6 7.7540 1.9884 -4.6853 23 6 4.8506 2.5508 -3.2369 24 6 4.1584 2.5542 -2.0417 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 2.7384 2.1718 2.5643 33 1 2.8683 0.3981 2.4897 34 1 5.1112 0.5190 3.5409 35 1 4.9807 2.2927 3.6151 36 1 4.1900 1.1521 8.1082 37 1 4.9948 -0.5318 -0.9362 38 1 6.2153 -0.5315 -3.0734 39 1 6.4053 0.4232 -5.2951 40 1 5.8211 2.0703 -5.6329 41 1 7.6919 3.0068 -4.3017 42 1 8.2761 1.3597 -3.9639 43 1 8.2996 1.9878 -5.6290 44 1 4.8150 3.4154 -3.8832 45 1 3.5822 3.4208 -1.7532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836852212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:09 Heat of formation + Delta-G solvation = -34.060289 kcal Electronic energy + Delta-G solvation = -22835.725510 eV Core-core repulsion = 19624.237158 eV Total energy + Delta-G solvation = -3211.488353 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.47323 -38.71096 -36.25940 -34.32915 -33.41717 -32.48226 -31.29740 -31.01634 -28.88035 -26.40288 -25.99781 -23.81641 -22.93270 -21.82262 -21.51346 -20.51662 -18.93021 -17.39050 -17.02466 -16.06380 -15.91597 -15.67455 -14.90991 -14.74899 -14.25583 -14.10765 -13.87815 -13.70236 -13.57551 -13.41329 -13.24551 -12.70403 -12.59146 -12.49291 -12.18336 -11.99771 -11.90521 -11.56674 -11.38169 -11.31130 -11.14673 -11.03286 -10.98385 -10.73547 -10.16436 -10.01601 -9.79063 -9.34746 -9.19168 -9.08380 -8.97148 -8.51320 -8.20659 -6.03546 -4.02343 1.21875 1.36655 3.00847 3.10208 3.37836 3.44422 3.55571 3.66346 4.50705 4.61353 4.68496 4.81867 4.90141 4.93696 5.01234 5.12312 5.15356 5.27260 5.31908 5.33805 5.34484 5.35872 5.49223 5.54587 5.63031 5.67971 5.70684 5.76987 5.94682 5.97932 5.99180 6.00913 6.04298 6.11871 6.20633 6.25259 6.49835 6.53285 6.65293 6.67097 7.12965 7.35599 7.41641 7.51916 7.78082 8.47776 8.58821 8.99180 9.59607 11.09195 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015874 B = 0.004016 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.516254 B = 6969.587095 C = 8338.311081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.112 3.888 4 N -0.585 5.585 5 C 0.513 3.487 6 O -0.524 6.524 7 C -0.119 4.119 8 C 0.001 3.999 9 C -0.524 4.524 10 H 0.073 0.927 11 C 0.070 3.930 12 N -0.903 5.903 13 Si 0.876 3.124 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.261 1.261 17 C 0.151 3.849 18 C -0.106 4.106 19 C -0.108 4.108 20 C -0.092 4.092 21 C -0.082 4.082 22 C -0.148 4.148 23 C -0.109 4.109 24 C -0.121 4.121 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.023 0.977 35 H 0.019 0.981 36 H 0.263 0.737 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.122 0.878 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.061 -0.083 -25.157 25.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.010 4.010 4 N -0.317 5.317 5 C 0.304 3.696 6 O -0.398 6.398 7 C -0.158 4.158 8 C -0.037 4.037 9 C -0.562 4.562 10 H 0.091 0.909 11 C -0.132 4.132 12 N -0.542 5.542 13 Si 0.703 3.297 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.186 1.186 17 C 0.060 3.940 18 C -0.126 4.126 19 C -0.126 4.126 20 C -0.092 4.092 21 C -0.119 4.119 22 C -0.205 4.205 23 C -0.128 4.128 24 C -0.141 4.141 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.042 0.958 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.140 0.860 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.376 -0.033 -24.897 24.935 hybrid contribution 0.835 0.070 0.219 0.866 sum -0.541 0.037 -24.678 24.684 Atomic orbital electron populations 1.21691 0.94953 1.02045 1.01976 1.21979 0.96299 0.97067 1.03017 1.21746 0.78222 0.97464 1.03557 1.45852 1.06672 1.75208 1.03920 1.21728 0.88347 0.74246 0.85248 1.90678 1.14645 1.47377 1.87104 1.21738 1.00243 1.03275 0.90564 1.19390 0.94480 0.97642 0.92181 1.21086 0.95257 1.50955 0.88897 0.90888 1.24956 0.98411 0.94329 0.95454 1.69908 1.35906 1.50876 0.97515 0.86816 0.86249 0.78718 0.77910 1.20218 1.21403 1.18561 1.17618 0.95915 0.93463 0.86968 1.21255 0.97448 0.97641 0.96211 1.20871 0.99479 0.98221 0.94040 1.19874 0.98203 0.94243 0.96860 1.20510 0.95539 1.01934 0.93940 1.21761 0.95681 1.01518 1.01569 1.20833 0.97565 0.97911 0.96478 1.21207 1.00769 0.97033 0.95092 0.92436 0.92081 0.92853 0.91868 0.90924 0.89275 0.90564 0.89530 0.89334 0.95846 0.96279 0.92706 0.86054 0.85990 0.91154 0.91182 0.92497 0.92439 0.92533 0.86002 0.85935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.14 -1.56 6.26 -26.73 -0.17 -1.72 16 3 C 0.11 1.29 5.13 -4.04 -0.02 1.27 16 4 N -0.59 -8.81 2.52 -113.46 -0.29 -9.10 16 5 C 0.51 9.84 7.52 -10.99 -0.08 9.75 16 6 O -0.52 -12.14 15.73 5.55 0.09 -12.05 16 7 C -0.12 -2.34 4.30 -27.89 -0.12 -2.46 16 8 C 0.00 0.02 3.33 -27.89 -0.09 -0.07 16 9 C -0.52 -14.99 9.66 -34.44 -0.33 -15.32 16 10 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 11 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 12 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 13 Si 0.88 22.75 27.47 -169.99 -4.67 18.08 16 14 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 15 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 16 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 17 C 0.15 2.20 4.76 -83.70 -0.40 1.80 16 18 C -0.11 -1.50 9.53 -39.39 -0.38 -1.87 16 19 C -0.11 -1.28 9.69 -39.61 -0.38 -1.66 16 20 C -0.09 -0.99 5.14 -104.59 -0.54 -1.52 16 21 C -0.08 -0.66 6.06 -27.88 -0.17 -0.83 16 22 C -0.15 -1.19 9.89 37.16 0.37 -0.82 16 23 C -0.11 -1.20 9.69 -39.61 -0.38 -1.58 16 24 C -0.12 -1.53 9.68 -39.39 -0.38 -1.92 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.89 6.95 -51.93 -0.36 0.53 16 30 H 0.09 1.00 6.47 -51.93 -0.34 0.66 16 31 H 0.08 0.74 7.86 -51.93 -0.41 0.33 16 32 H 0.09 1.57 7.26 -51.93 -0.38 1.19 16 33 H 0.09 1.62 6.95 -51.93 -0.36 1.25 16 34 H 0.02 0.62 7.16 -51.93 -0.37 0.24 16 35 H 0.02 0.50 7.53 -51.93 -0.39 0.10 16 36 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 37 H 0.12 1.76 8.06 -52.48 -0.42 1.34 16 38 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 40 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 44 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -33.90 368.32 -9.03 -42.93 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.68 Total: -2.24 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -2.81 Total: -15.93 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.49 Total: -36.33 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.67 Total: 18.08 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.90 -9.03 -42.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836852212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.868 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds