Wall clock time and date at job start Tue Mar 31 2020 06:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46914 * 2 1 4 4 N 1.46500 * 109.47126 * 179.97438 * 3 2 1 5 5 C 1.34774 * 119.99764 * 269.99868 * 4 3 2 6 6 O 1.21285 * 119.99652 * 184.82730 * 5 4 3 7 7 C 1.50700 * 120.00294 * 4.82970 * 5 4 3 8 8 C 1.52993 * 109.47067 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47067 * 180.02562 * 8 7 5 10 10 H 1.07999 * 120.00343 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00394 * 179.97438 * 9 8 7 12 12 N 1.31511 * 120.00423 * 179.97438 * 11 9 8 13 13 Si 1.86805 * 119.99882 * 0.02562 * 11 9 8 14 14 H 1.48493 * 109.47525 * 89.99211 * 13 11 9 15 15 H 1.48499 * 109.47071 * 209.99963 * 13 11 9 16 16 H 1.48506 * 109.46845 * 329.99399 * 13 11 9 17 17 C 1.39921 * 119.99878 * 89.99891 * 4 3 2 18 18 C 1.38876 * 120.07098 * 247.43132 * 17 4 3 19 19 C 1.38114 * 119.93085 * 179.70325 * 18 17 4 20 20 C 1.38278 * 120.06984 * 0.56895 * 19 18 17 21 21 C 1.50696 * 119.93107 * 179.70212 * 20 19 18 22 22 C 1.53001 * 109.47048 * 270.02258 * 21 20 19 23 23 C 1.38285 * 120.14160 * 359.72759 * 20 19 18 24 24 C 1.38120 * 120.06838 * 359.97438 * 23 20 19 25 25 H 1.09004 * 109.46828 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47502 * 300.00205 * 1 2 3 27 27 H 1.09005 * 109.47263 * 60.00346 * 1 2 3 28 28 H 1.08993 * 109.47040 * 239.99880 * 2 1 3 29 29 H 1.09001 * 109.46789 * 119.99548 * 2 1 3 30 30 H 1.08997 * 109.47203 * 59.99612 * 3 2 1 31 31 H 1.09005 * 109.46873 * 299.99893 * 3 2 1 32 32 H 1.08997 * 109.46965 * 300.00032 * 7 5 4 33 33 H 1.09006 * 109.46812 * 59.99978 * 7 5 4 34 34 H 1.09003 * 109.47231 * 299.99382 * 8 7 5 35 35 H 1.08998 * 109.47597 * 60.00257 * 8 7 5 36 36 H 0.97007 * 120.00396 * 180.02562 * 12 11 9 37 37 H 1.08003 * 120.03375 * 359.97438 * 18 17 4 38 38 H 1.08000 * 119.96583 * 180.29691 * 19 18 17 39 39 H 1.08997 * 109.46999 * 30.02632 * 21 20 19 40 40 H 1.09006 * 109.46896 * 150.02846 * 21 20 19 41 41 H 1.08997 * 109.47526 * 300.00051 * 22 21 20 42 42 H 1.08999 * 109.47157 * 60.00429 * 22 21 20 43 43 H 1.09009 * 109.47083 * 179.97438 * 22 21 20 44 44 H 1.08002 * 119.97006 * 179.97438 * 23 20 19 45 45 H 1.08002 * 120.03289 * 179.97438 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1783 1.4428 1.1681 6 8 5.3879 1.5313 1.1704 7 6 3.4283 1.3331 2.4706 8 6 4.4211 1.3576 3.6344 9 6 3.6711 1.2472 4.9369 10 1 2.5941 1.1672 4.9348 11 6 4.3599 1.2474 6.1312 12 7 3.7054 1.1516 7.2679 13 14 6.2229 1.3850 6.1350 14 1 6.6135 2.8164 6.1951 15 1 6.7695 0.6725 7.3177 16 1 6.7667 0.7752 4.8949 17 6 4.2051 1.4424 -1.2109 18 6 4.9526 0.3326 -1.5824 19 6 5.6376 0.3331 -2.7817 20 6 5.5891 1.4417 -3.6068 21 6 6.3431 1.4415 -4.9115 22 6 7.7540 1.9884 -4.6853 23 6 4.8506 2.5508 -3.2369 24 6 4.1584 2.5542 -2.0417 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 2.7384 2.1718 2.5643 33 1 2.8683 0.3981 2.4897 34 1 5.1112 0.5190 3.5409 35 1 4.9807 2.2927 3.6151 36 1 4.1900 1.1521 8.1082 37 1 4.9948 -0.5318 -0.9362 38 1 6.2153 -0.5315 -3.0734 39 1 6.4053 0.4232 -5.2951 40 1 5.8211 2.0703 -5.6329 41 1 7.6919 3.0068 -4.3017 42 1 8.2761 1.3597 -3.9639 43 1 8.2996 1.9878 -5.6290 44 1 4.8150 3.4154 -3.8832 45 1 3.5822 3.4208 -1.7532 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836852212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:09 Heat of formation + Delta-G solvation = -51.960180 kcal Electronic energy + Delta-G solvation = -22836.501708 eV Core-core repulsion = 19624.237158 eV Total energy + Delta-G solvation = -3212.264550 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.68857 -39.83268 -37.46752 -35.70291 -34.95887 -33.45093 -33.24874 -31.95032 -29.92058 -28.06234 -27.05262 -24.89754 -23.86003 -23.24093 -22.44658 -21.78024 -20.28991 -19.20405 -18.39398 -17.57749 -17.04166 -16.57140 -16.27528 -16.08779 -15.76933 -15.36086 -14.87282 -14.80439 -14.65799 -14.52829 -14.36919 -14.17289 -14.07359 -13.49720 -13.42411 -13.07077 -12.95741 -12.77870 -12.72390 -12.40114 -12.17191 -12.10166 -12.05574 -11.90057 -11.83722 -11.70357 -11.53649 -11.42298 -10.86203 -10.79979 -10.23468 -9.91566 -9.25266 -8.33447 -6.36197 0.24945 0.42309 1.30633 1.32701 1.47741 1.53831 1.90118 2.32827 2.71822 3.02078 3.70303 3.87049 3.87464 3.93866 4.02474 4.06320 4.28893 4.31185 4.33454 4.41086 4.45055 4.47514 4.54621 4.61016 4.65243 4.70302 4.82101 4.84968 4.97637 5.00136 5.08984 5.15253 5.18691 5.23354 5.28959 5.33403 5.38153 5.40601 5.43998 5.51005 5.57491 5.67104 5.68468 6.09158 6.19831 6.24946 6.69526 7.14405 7.29165 8.82108 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015874 B = 0.004016 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.516254 B = 6969.587095 C = 8338.311081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.106 3.894 4 N -0.571 5.571 5 C 0.515 3.485 6 O -0.573 6.573 7 C -0.110 4.110 8 C 0.007 3.993 9 C -0.527 4.527 10 H 0.053 0.947 11 C 0.017 3.983 12 N -0.941 5.941 13 Si 0.935 3.065 14 H -0.268 1.268 15 H -0.276 1.276 16 H -0.265 1.265 17 C 0.121 3.879 18 C -0.127 4.127 19 C -0.113 4.113 20 C -0.088 4.088 21 C -0.079 4.079 22 C -0.148 4.148 23 C -0.108 4.108 24 C -0.127 4.127 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.007 0.993 35 H 0.008 0.992 36 H 0.268 0.732 37 H 0.105 0.895 38 H 0.138 0.862 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.151 0.849 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.030 0.665 -27.963 28.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.179 4.179 3 C -0.015 4.015 4 N -0.300 5.300 5 C 0.306 3.694 6 O -0.452 6.452 7 C -0.150 4.150 8 C -0.031 4.031 9 C -0.565 4.565 10 H 0.071 0.929 11 C -0.181 4.181 12 N -0.582 5.582 13 Si 0.759 3.241 14 H -0.193 1.193 15 H -0.201 1.201 16 H -0.190 1.190 17 C 0.031 3.969 18 C -0.146 4.146 19 C -0.131 4.131 20 C -0.088 4.088 21 C -0.116 4.116 22 C -0.205 4.205 23 C -0.126 4.126 24 C -0.146 4.146 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.111 0.889 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.156 0.844 39 H 0.100 0.900 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.093 0.907 44 H 0.169 0.831 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.393 0.713 -27.738 27.782 hybrid contribution 0.759 -0.179 0.984 1.255 sum -0.634 0.533 -26.755 26.767 Atomic orbital electron populations 1.21663 0.93183 1.02594 1.02760 1.21912 0.97730 0.96242 1.01990 1.22045 0.76091 0.98347 1.05030 1.45708 1.07964 1.73223 1.03128 1.21450 0.87607 0.74112 0.86181 1.90648 1.16443 1.50185 1.87875 1.21546 0.99199 1.04812 0.89429 1.19221 0.94934 0.96219 0.92767 1.21372 0.94687 1.49984 0.90464 0.92876 1.25744 1.02786 0.94300 0.95268 1.70009 1.37717 1.52227 0.98216 0.85887 0.81101 0.79130 0.77956 1.19305 1.20129 1.18968 1.17848 0.97327 0.94685 0.87054 1.21288 0.98652 0.97456 0.97247 1.21114 0.99159 0.99470 0.93403 1.20259 0.97454 0.93477 0.97609 1.20578 0.95174 1.03211 0.92678 1.21763 0.95769 1.00817 1.02191 1.21203 0.96458 0.98842 0.96087 1.21389 1.01167 0.96634 0.95411 0.92062 0.92151 0.91189 0.91981 0.92910 0.88875 0.87970 0.87716 0.88059 0.97445 0.97396 0.92308 0.87717 0.84375 0.89983 0.89278 0.93073 0.93718 0.90694 0.83125 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.91 71.98 0.71 -1.59 16 2 C -0.14 -2.88 6.26 30.60 0.19 -2.69 16 3 C 0.11 2.28 5.13 86.38 0.44 2.72 16 4 N -0.57 -16.98 2.52 -631.25 -1.59 -18.58 16 5 C 0.52 19.97 7.52 87.66 0.66 20.63 16 6 O -0.57 -27.21 15.73 -3.05 -0.05 -27.25 16 7 C -0.11 -4.38 4.30 29.85 0.13 -4.25 16 8 C 0.01 0.34 3.33 29.85 0.10 0.44 16 9 C -0.53 -30.69 9.66 25.60 0.25 -30.44 16 10 H 0.05 3.23 7.99 -2.91 -0.02 3.21 16 11 C 0.02 1.02 5.47 84.65 0.46 1.48 16 12 N -0.94 -59.12 13.96 21.45 0.30 -58.82 16 13 Si 0.93 47.43 27.47 68.60 1.88 49.31 16 14 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 15 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 16 H -0.27 -13.54 6.54 99.48 0.65 -12.88 16 17 C 0.12 3.45 4.76 38.15 0.18 3.63 16 18 C -0.13 -3.60 9.53 22.39 0.21 -3.39 16 19 C -0.11 -2.56 9.69 22.25 0.22 -2.35 16 20 C -0.09 -1.68 5.14 -19.84 -0.10 -1.79 16 21 C -0.08 -1.02 6.06 29.85 0.18 -0.84 16 22 C -0.15 -2.00 9.89 71.98 0.71 -1.28 16 23 C -0.11 -2.07 9.69 22.25 0.22 -1.86 16 24 C -0.13 -2.97 9.68 22.39 0.22 -2.76 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.29 6.95 -2.39 -0.02 1.27 16 30 H 0.09 1.95 6.47 -2.39 -0.02 1.93 16 31 H 0.10 1.71 7.86 -2.38 -0.02 1.70 16 32 H 0.10 3.74 7.26 -2.39 -0.02 3.72 16 33 H 0.10 3.73 6.95 -2.38 -0.02 3.71 16 34 H 0.01 0.39 7.16 -2.39 -0.02 0.37 16 35 H 0.01 0.41 7.53 -2.39 -0.02 0.39 16 36 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 37 H 0.10 3.21 8.06 -2.91 -0.02 3.18 16 38 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 39 H 0.08 0.90 8.08 -2.39 -0.02 0.88 16 40 H 0.09 0.85 8.08 -2.38 -0.02 0.83 16 41 H 0.05 0.74 8.14 -2.39 -0.02 0.73 16 42 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 45 H 0.13 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -74.33 368.32 6.21 -68.12 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.88 Total: 11.55 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 4.78 Total: -24.33 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -1.29 Total: -77.40 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.25 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.88 Total: 49.31 kcal Total: -74.33 6.21 -68.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836852212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.161 kcal (2) G-P(sol) polarization free energy of solvation -74.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds