Wall clock time and date at job start Tue Mar 31 2020 05:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47058 * 2 1 4 4 H 1.09002 * 109.47432 * 41.21063 * 3 2 1 5 5 N 1.46898 * 109.47371 * 281.21063 * 3 2 1 6 6 C 1.46898 * 111.00207 * 307.47354 * 5 3 2 7 7 C 1.50694 * 109.47420 * 186.79806 * 6 5 3 8 8 C 1.38306 * 119.93147 * 269.72606 * 7 6 5 9 9 C 1.38098 * 120.06720 * 179.72038 * 8 7 6 10 10 C 1.38882 * 119.93142 * 0.55405 * 9 8 7 11 11 O 1.35749 * 120.06813 * 179.74082 * 10 9 8 12 12 C 1.34833 * 116.99915 * 189.56094 * 11 10 9 13 13 H 1.07997 * 119.99676 * 6.74138 * 12 11 10 14 14 C 1.38647 * 119.99809 * 186.73488 * 12 11 10 15 15 N 1.31561 * 119.99935 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00304 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47203 * 89.99592 * 16 14 12 18 18 H 1.48501 * 109.46890 * 209.99456 * 16 14 12 19 19 H 1.48489 * 109.46958 * 329.99519 * 16 14 12 20 20 C 1.38873 * 119.86125 * 359.72417 * 10 9 8 21 21 C 1.38100 * 119.93208 * 359.97438 * 20 10 9 22 22 C 1.53007 * 109.47172 * 161.21222 * 3 2 1 23 23 H 1.08995 * 115.54822 * 79.60358 * 22 3 2 24 24 C 1.52996 * 117.49589 * 293.93435 * 22 3 2 25 25 C 1.52993 * 60.00061 * 252.48876 * 24 22 3 26 26 H 1.09006 * 117.49795 * 252.51050 * 25 24 22 27 27 C 1.53001 * 117.50034 * 107.49419 * 25 24 22 28 28 H 1.09000 * 109.47571 * 307.02198 * 1 2 3 29 29 H 1.09000 * 109.47688 * 67.02335 * 1 2 3 30 30 H 1.09008 * 109.47265 * 187.02333 * 1 2 3 31 31 H 1.09003 * 109.47224 * 240.00073 * 2 1 3 32 32 H 1.08998 * 109.47187 * 120.00288 * 2 1 3 33 33 H 1.00903 * 110.99822 * 71.42655 * 5 3 2 34 34 H 1.08995 * 109.47110 * 306.80417 * 6 5 3 35 35 H 1.09009 * 109.46694 * 66.79780 * 6 5 3 36 36 H 1.07995 * 119.96448 * 0.02562 * 8 7 6 37 37 H 1.08002 * 120.03538 * 180.26890 * 9 8 7 38 38 H 0.97001 * 120.00361 * 180.02562 * 15 14 12 39 39 H 1.08000 * 120.03873 * 179.97438 * 20 10 9 40 40 H 1.08007 * 119.96554 * 180.02562 * 21 20 10 41 41 H 1.09002 * 117.50234 * 359.97438 * 24 22 3 42 42 H 1.09000 * 117.50140 * 144.99814 * 24 22 3 43 43 H 1.08997 * 109.47050 * 344.30582 * 27 25 24 44 44 H 1.08997 * 109.47421 * 104.30937 * 27 25 24 45 45 H 1.09003 * 109.47327 * 224.30845 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.4322 2.0428 0.6771 5 7 1.9493 1.9939 -1.3585 6 6 2.6102 1.1121 -2.3299 7 6 2.6441 1.7852 -3.6777 8 6 1.6042 1.5962 -4.5697 9 6 1.6296 2.2163 -5.8034 10 6 2.7062 3.0212 -6.1524 11 8 2.7365 3.6279 -7.3664 12 6 3.8897 4.2297 -7.7214 13 1 4.7677 4.1225 -7.1017 14 6 3.9484 4.9860 -8.8819 15 7 5.0734 5.5736 -9.2280 16 14 2.4296 5.1718 -9.9535 17 1 1.6558 6.3605 -9.5135 18 1 2.8412 5.3455 -11.3697 19 1 1.5844 3.9572 -9.8290 20 6 3.7516 3.2044 -5.2567 21 6 3.7174 2.5865 -4.0221 22 6 3.4975 1.4681 0.4646 23 1 4.2361 1.1957 -0.2893 24 6 3.7846 1.0658 1.9125 25 6 3.8939 2.5321 1.4900 26 1 4.8934 2.9599 1.4107 27 6 2.8025 3.4897 1.9725 28 1 -0.3634 0.6188 0.8205 29 1 -0.3634 0.4011 -0.9461 30 1 -0.3634 -1.0200 0.1257 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.9885 2.1614 -1.6174 34 1 3.6287 0.9072 -2.0003 35 1 2.0574 0.1756 -2.4052 36 1 0.7692 0.9670 -4.2993 37 1 0.8152 2.0719 -6.4979 38 1 5.1144 6.1030 -10.0397 39 1 4.5905 3.8293 -5.5253 40 1 4.5299 2.7289 -3.3249 41 1 2.9350 0.7832 2.5343 42 1 4.7120 0.5288 2.1113 43 1 1.9474 2.9157 2.3292 44 1 3.1914 4.1047 2.7841 45 1 2.4912 4.1310 1.1479 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840725863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:56 Heat of formation + Delta-G solvation = 12.502651 kcal Electronic energy + Delta-G solvation = -22534.825673 eV Core-core repulsion = 19325.356441 eV Total energy + Delta-G solvation = -3209.469232 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.53162 -38.95289 -36.99709 -35.61739 -32.56557 -32.12044 -30.21762 -29.58647 -28.71748 -26.39564 -25.29759 -24.02941 -22.51356 -22.01850 -20.99188 -20.40028 -18.78824 -17.86353 -17.23499 -16.70321 -15.64008 -15.28602 -14.81562 -14.45386 -14.30308 -14.02578 -13.84626 -13.70399 -13.37445 -13.30785 -12.98471 -12.77326 -12.53091 -12.46324 -12.29229 -12.14125 -11.83172 -11.61359 -11.59467 -11.32225 -10.94643 -10.80284 -10.67657 -10.63384 -10.51835 -10.16426 -10.11021 -9.80820 -9.41023 -8.84257 -8.28334 -8.20333 -7.28795 -6.39788 -4.06155 2.16779 2.22491 3.22981 3.26995 3.41620 3.59316 4.22942 4.25493 4.43422 4.60720 4.66540 4.84714 4.91502 4.95308 4.96391 5.07810 5.11735 5.20665 5.26788 5.34606 5.39414 5.54624 5.57768 5.60980 5.68527 5.71517 5.72865 5.77537 5.81213 5.81730 5.94119 5.96339 6.05321 6.14770 6.18062 6.27903 6.38884 6.60622 6.83068 7.02196 7.16034 7.27769 7.36972 7.50119 7.64334 7.82281 8.06218 8.95858 9.59049 10.68153 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025472 B = 0.003061 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.981605 B = 9144.505803 C = 9782.624663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.166 4.166 3 C 0.115 3.885 4 H 0.083 0.917 5 N -0.672 5.672 6 C 0.111 3.889 7 C -0.170 4.170 8 C -0.072 4.072 9 C -0.193 4.193 10 C 0.160 3.840 11 O -0.220 6.220 12 C -0.387 4.387 13 H 0.105 0.895 14 C 0.062 3.938 15 N -0.881 5.881 16 Si 0.906 3.094 17 H -0.274 1.274 18 H -0.282 1.282 19 H -0.260 1.260 20 C -0.220 4.220 21 C -0.052 4.052 22 C -0.134 4.134 23 H 0.104 0.896 24 C -0.181 4.181 25 C -0.146 4.146 26 H 0.100 0.900 27 C -0.121 4.121 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.341 0.659 34 H 0.072 0.928 35 H 0.033 0.967 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.279 0.721 39 H 0.131 0.869 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.463 -9.528 20.346 23.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.205 4.205 3 C 0.005 3.995 4 H 0.101 0.899 5 N -0.302 5.302 6 C -0.017 4.017 7 C -0.171 4.171 8 C -0.091 4.091 9 C -0.212 4.212 10 C 0.108 3.892 11 O -0.125 6.125 12 C -0.463 4.463 13 H 0.122 0.878 14 C -0.141 4.141 15 N -0.519 5.519 16 Si 0.731 3.269 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.184 1.184 20 C -0.239 4.239 21 C -0.071 4.071 22 C -0.153 4.153 23 H 0.122 0.878 24 C -0.219 4.219 25 C -0.164 4.164 26 H 0.118 0.882 27 C -0.178 4.178 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.159 0.841 34 H 0.090 0.910 35 H 0.051 0.949 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.089 0.911 39 H 0.149 0.851 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.970 -8.945 20.067 22.766 hybrid contribution -0.930 -0.505 -0.581 1.207 sum -6.900 -9.450 19.486 22.729 Atomic orbital electron populations 1.21782 0.95839 1.01584 1.01700 1.22358 0.96069 0.99012 1.03042 1.21226 0.93943 0.93030 0.91341 0.89858 1.60583 1.21369 1.47712 1.00544 1.20734 0.99018 0.92710 0.89256 1.19207 0.97224 1.05075 0.95615 1.20471 0.97115 0.98485 0.93057 1.20166 0.99598 1.03051 0.98384 1.19158 0.93489 0.91542 0.85060 1.83596 1.37472 1.62692 1.28720 1.20749 0.86667 1.29568 1.09300 0.87778 1.24474 0.98041 0.94676 0.96871 1.69651 1.25608 1.31332 1.25283 0.86178 0.82249 0.79684 0.78775 1.19929 1.20807 1.18369 1.21291 1.01601 1.06054 0.94955 1.20619 0.96820 0.94644 0.95014 1.22332 0.97536 1.03621 0.91803 0.87770 1.23097 1.02784 0.98105 0.97899 1.22295 1.00375 0.90434 1.03311 0.88154 1.21337 0.96975 0.98552 1.00948 0.92807 0.92826 0.92825 0.90973 0.91603 0.84064 0.90990 0.94879 0.87413 0.86706 0.91093 0.85099 0.87353 0.89070 0.89122 0.92883 0.92607 0.91481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.81 37.16 0.36 -0.83 16 2 C -0.17 -1.44 5.37 -26.74 -0.14 -1.58 16 3 C 0.11 1.10 2.47 -67.71 -0.17 0.94 16 4 H 0.08 0.79 5.67 -51.93 -0.29 0.49 16 5 N -0.67 -7.86 6.38 -107.99 -0.69 -8.55 16 6 C 0.11 1.41 4.91 -4.98 -0.02 1.38 16 7 C -0.17 -2.77 5.45 -104.58 -0.57 -3.34 16 8 C -0.07 -1.21 9.69 -39.61 -0.38 -1.59 16 9 C -0.19 -3.82 9.99 -39.39 -0.39 -4.21 16 10 C 0.16 3.71 6.63 -39.11 -0.26 3.45 16 11 O -0.22 -5.85 8.59 0.04 0.00 -5.85 16 12 C -0.39 -11.02 9.84 30.88 0.30 -10.71 16 13 H 0.10 3.04 5.67 -52.49 -0.30 2.74 16 14 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 15 N -0.88 -25.65 13.96 55.48 0.77 -24.87 16 16 Si 0.91 21.85 28.62 -169.99 -4.86 16.98 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 20 C -0.22 -4.80 9.10 -39.40 -0.36 -5.16 16 21 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16 22 C -0.13 -1.32 5.05 -90.62 -0.46 -1.78 16 23 H 0.10 1.14 6.42 -51.93 -0.33 0.81 16 24 C -0.18 -1.51 9.22 -26.74 -0.25 -1.76 16 25 C -0.15 -1.37 6.41 -90.63 -0.58 -1.95 16 26 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 27 C -0.12 -1.05 8.91 37.16 0.33 -0.72 16 28 H 0.05 0.39 7.99 -51.93 -0.42 -0.02 16 29 H 0.05 0.44 7.84 -51.93 -0.41 0.03 16 30 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 31 H 0.07 0.69 5.49 -51.93 -0.29 0.40 16 32 H 0.07 0.54 7.31 -51.93 -0.38 0.16 16 33 H 0.34 3.89 8.51 -39.29 -0.33 3.56 16 34 H 0.07 0.91 6.16 -51.93 -0.32 0.59 16 35 H 0.03 0.39 6.18 -51.92 -0.32 0.07 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.13 3.02 5.83 -52.49 -0.31 2.72 16 40 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 41 H 0.09 0.70 7.99 -51.93 -0.41 0.29 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.05 0.42 6.99 -51.93 -0.36 0.06 16 44 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 358.16 15.07 5.40 5.40 Total: -1.00 -28.90 358.16 -9.44 -38.34 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -6.99 Total: 6.09 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -3.07 Total: -27.52 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 0.09 Total: -33.42 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: 0.00 Total: -5.85 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.86 Total: 16.98 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.90 -9.44 -38.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840725863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.838 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds