Wall clock time and date at job start Tue Mar 31 2020 05:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47058 * 2 1 4 4 H 1.09002 * 109.47432 * 41.21063 * 3 2 1 5 5 N 1.46898 * 109.47371 * 281.21063 * 3 2 1 6 6 C 1.46898 * 111.00207 * 307.47354 * 5 3 2 7 7 C 1.50694 * 109.47420 * 186.79806 * 6 5 3 8 8 C 1.38306 * 119.93147 * 269.72606 * 7 6 5 9 9 C 1.38098 * 120.06720 * 179.72038 * 8 7 6 10 10 C 1.38882 * 119.93142 * 0.55405 * 9 8 7 11 11 O 1.35749 * 120.06813 * 179.74082 * 10 9 8 12 12 C 1.34833 * 116.99915 * 189.56094 * 11 10 9 13 13 H 1.07997 * 119.99676 * 6.74138 * 12 11 10 14 14 C 1.38647 * 119.99809 * 186.73488 * 12 11 10 15 15 N 1.31561 * 119.99935 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00304 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47203 * 89.99592 * 16 14 12 18 18 H 1.48501 * 109.46890 * 209.99456 * 16 14 12 19 19 H 1.48489 * 109.46958 * 329.99519 * 16 14 12 20 20 C 1.38873 * 119.86125 * 359.72417 * 10 9 8 21 21 C 1.38100 * 119.93208 * 359.97438 * 20 10 9 22 22 C 1.53007 * 109.47172 * 161.21222 * 3 2 1 23 23 H 1.08995 * 115.54822 * 79.60358 * 22 3 2 24 24 C 1.52996 * 117.49589 * 293.93435 * 22 3 2 25 25 C 1.52993 * 60.00061 * 252.48876 * 24 22 3 26 26 H 1.09006 * 117.49795 * 252.51050 * 25 24 22 27 27 C 1.53001 * 117.50034 * 107.49419 * 25 24 22 28 28 H 1.09000 * 109.47571 * 307.02198 * 1 2 3 29 29 H 1.09000 * 109.47688 * 67.02335 * 1 2 3 30 30 H 1.09008 * 109.47265 * 187.02333 * 1 2 3 31 31 H 1.09003 * 109.47224 * 240.00073 * 2 1 3 32 32 H 1.08998 * 109.47187 * 120.00288 * 2 1 3 33 33 H 1.00903 * 110.99822 * 71.42655 * 5 3 2 34 34 H 1.08995 * 109.47110 * 306.80417 * 6 5 3 35 35 H 1.09009 * 109.46694 * 66.79780 * 6 5 3 36 36 H 1.07995 * 119.96448 * 0.02562 * 8 7 6 37 37 H 1.08002 * 120.03538 * 180.26890 * 9 8 7 38 38 H 0.97001 * 120.00361 * 180.02562 * 15 14 12 39 39 H 1.08000 * 120.03873 * 179.97438 * 20 10 9 40 40 H 1.08007 * 119.96554 * 180.02562 * 21 20 10 41 41 H 1.09002 * 117.50234 * 359.97438 * 24 22 3 42 42 H 1.09000 * 117.50140 * 144.99814 * 24 22 3 43 43 H 1.08997 * 109.47050 * 344.30582 * 27 25 24 44 44 H 1.08997 * 109.47421 * 104.30937 * 27 25 24 45 45 H 1.09003 * 109.47327 * 224.30845 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.4322 2.0428 0.6771 5 7 1.9493 1.9939 -1.3585 6 6 2.6102 1.1121 -2.3299 7 6 2.6441 1.7852 -3.6777 8 6 1.6042 1.5962 -4.5697 9 6 1.6296 2.2163 -5.8034 10 6 2.7062 3.0212 -6.1524 11 8 2.7365 3.6279 -7.3664 12 6 3.8897 4.2297 -7.7214 13 1 4.7677 4.1225 -7.1017 14 6 3.9484 4.9860 -8.8819 15 7 5.0734 5.5736 -9.2280 16 14 2.4296 5.1718 -9.9535 17 1 1.6558 6.3605 -9.5135 18 1 2.8412 5.3455 -11.3697 19 1 1.5844 3.9572 -9.8290 20 6 3.7516 3.2044 -5.2567 21 6 3.7174 2.5865 -4.0221 22 6 3.4975 1.4681 0.4646 23 1 4.2361 1.1957 -0.2893 24 6 3.7846 1.0658 1.9125 25 6 3.8939 2.5321 1.4900 26 1 4.8934 2.9599 1.4107 27 6 2.8025 3.4897 1.9725 28 1 -0.3634 0.6188 0.8205 29 1 -0.3634 0.4011 -0.9461 30 1 -0.3634 -1.0200 0.1257 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 0.9885 2.1614 -1.6174 34 1 3.6287 0.9072 -2.0003 35 1 2.0574 0.1756 -2.4052 36 1 0.7692 0.9670 -4.2993 37 1 0.8152 2.0719 -6.4979 38 1 5.1144 6.1030 -10.0397 39 1 4.5905 3.8293 -5.5253 40 1 4.5299 2.7289 -3.3249 41 1 2.9350 0.7832 2.5343 42 1 4.7120 0.5288 2.1113 43 1 1.9474 2.9157 2.3292 44 1 3.1914 4.1047 2.7841 45 1 2.4912 4.1310 1.1479 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840725863.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:56 Heat of formation + Delta-G solvation = -3.399561 kcal Electronic energy + Delta-G solvation = -22535.515245 eV Core-core repulsion = 19325.356441 eV Total energy + Delta-G solvation = -3210.158804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.92927 -40.07269 -38.50795 -36.59126 -34.48337 -33.23481 -31.79334 -30.85069 -29.41924 -27.78972 -26.71968 -25.23666 -23.67515 -23.16379 -22.18827 -21.42302 -19.83969 -19.59476 -19.04020 -17.66827 -16.72786 -16.50748 -16.07622 -15.86587 -15.62840 -15.50852 -15.21809 -14.89501 -14.63505 -14.27461 -14.21434 -14.08386 -14.02712 -13.59881 -13.37247 -13.07550 -12.99521 -12.77867 -12.49507 -12.39420 -12.31101 -12.29100 -12.08162 -11.85320 -11.60644 -11.36771 -11.30533 -10.90905 -10.86166 -10.52935 -9.77781 -9.20314 -8.93618 -8.50053 -6.22534 0.59477 0.65111 1.31190 1.35674 1.52253 2.28392 2.72391 2.88254 3.09757 3.14475 3.51823 3.78135 3.90505 4.04263 4.08167 4.15887 4.21943 4.26220 4.34272 4.40191 4.47581 4.52571 4.59842 4.63628 4.72452 4.84998 4.90443 4.94229 4.96421 5.00357 5.04913 5.06493 5.17853 5.19625 5.27367 5.27835 5.40459 5.41534 5.45866 5.54036 5.59102 5.77435 5.84403 5.92263 6.19619 6.29938 6.59829 6.84492 7.59698 8.62047 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.025472 B = 0.003061 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.981605 B = 9144.505803 C = 9782.624663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.160 4.160 3 C 0.121 3.879 4 H 0.088 0.912 5 N -0.683 5.683 6 C 0.117 3.883 7 C -0.143 4.143 8 C -0.062 4.062 9 C -0.190 4.190 10 C 0.117 3.883 11 O -0.247 6.247 12 C -0.397 4.397 13 H 0.076 0.924 14 C 0.008 3.992 15 N -0.925 5.925 16 Si 0.973 3.027 17 H -0.267 1.267 18 H -0.267 1.267 19 H -0.261 1.261 20 C -0.236 4.236 21 C -0.057 4.057 22 C -0.147 4.147 23 H 0.092 0.908 24 C -0.164 4.164 25 C -0.158 4.158 26 H 0.093 0.907 27 C -0.118 4.118 28 H 0.058 0.942 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.345 0.655 34 H 0.075 0.925 35 H 0.055 0.945 36 H 0.153 0.847 37 H 0.128 0.872 38 H 0.285 0.715 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.102 0.898 42 H 0.097 0.903 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.932 -11.531 22.649 26.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.199 4.199 3 C 0.011 3.989 4 H 0.106 0.894 5 N -0.314 5.314 6 C -0.011 4.011 7 C -0.144 4.144 8 C -0.080 4.080 9 C -0.209 4.209 10 C 0.069 3.931 11 O -0.154 6.154 12 C -0.473 4.473 13 H 0.093 0.907 14 C -0.190 4.190 15 N -0.566 5.566 16 Si 0.795 3.205 17 H -0.192 1.192 18 H -0.191 1.191 19 H -0.185 1.185 20 C -0.256 4.256 21 C -0.076 4.076 22 C -0.166 4.166 23 H 0.110 0.890 24 C -0.202 4.202 25 C -0.176 4.176 26 H 0.112 0.888 27 C -0.175 4.175 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.164 0.836 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.171 0.829 37 H 0.146 0.854 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.143 0.857 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.444 -10.973 22.418 26.349 hybrid contribution -0.163 -0.059 -0.933 0.948 sum -8.607 -11.031 21.485 25.640 Atomic orbital electron populations 1.21779 0.95110 1.02115 1.01815 1.22292 0.96614 0.97927 1.03063 1.21213 0.93888 0.93799 0.89955 0.89364 1.60487 1.21661 1.47930 1.01275 1.20684 0.99994 0.93141 0.87294 1.19705 0.95401 1.02171 0.97096 1.20949 0.98175 0.97564 0.91356 1.20514 0.98631 1.01936 0.99852 1.19700 0.95498 0.93135 0.84798 1.83527 1.36398 1.64678 1.30832 1.20653 0.87015 1.30150 1.09521 0.90673 1.25313 1.01163 0.94404 0.98102 1.69738 1.27554 1.32933 1.26384 0.85187 0.78331 0.79504 0.77502 1.19172 1.19117 1.18542 1.21261 1.00841 1.06882 0.96595 1.20843 0.98346 0.94598 0.93817 1.22332 0.97410 1.04494 0.92333 0.89038 1.23132 1.03436 0.96990 0.96624 1.22369 1.00332 0.91223 1.03708 0.88831 1.21305 0.97126 0.98413 1.00633 0.92280 0.93064 0.92230 0.91572 0.90937 0.83625 0.90685 0.92732 0.82925 0.85372 0.90583 0.87964 0.85728 0.87928 0.88497 0.91905 0.91892 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.81 71.98 0.71 -1.10 16 2 C -0.16 -2.18 5.37 30.59 0.16 -2.01 16 3 C 0.12 1.95 2.47 44.92 0.11 2.06 16 4 H 0.09 1.38 5.67 -2.39 -0.01 1.37 16 5 N -0.68 -13.80 6.38 -495.59 -3.16 -16.97 16 6 C 0.12 2.56 4.91 85.56 0.42 2.98 16 7 C -0.14 -4.25 5.45 -19.84 -0.11 -4.36 16 8 C -0.06 -1.85 9.69 22.25 0.22 -1.64 16 9 C -0.19 -7.26 9.99 22.39 0.22 -7.04 16 10 C 0.12 5.61 6.63 22.58 0.15 5.76 16 11 O -0.25 -13.68 8.59 -22.76 -0.20 -13.88 16 12 C -0.40 -23.97 9.84 67.92 0.67 -23.30 16 13 H 0.08 4.80 5.67 -2.91 -0.02 4.78 16 14 C 0.01 0.49 5.49 84.83 0.47 0.95 16 15 N -0.93 -56.30 13.96 21.61 0.30 -56.00 16 16 Si 0.97 46.14 28.62 68.60 1.96 48.10 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 20 C -0.24 -10.78 9.10 22.39 0.20 -10.57 16 21 C -0.06 -2.08 9.69 22.25 0.22 -1.86 16 22 C -0.15 -2.55 5.05 -10.79 -0.05 -2.60 16 23 H 0.09 1.83 6.42 -2.39 -0.02 1.81 16 24 C -0.16 -2.29 9.22 30.59 0.28 -2.00 16 25 C -0.16 -2.67 6.41 -10.80 -0.07 -2.74 16 26 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 27 C -0.12 -1.82 8.91 71.98 0.64 -1.18 16 28 H 0.06 0.65 7.99 -2.39 -0.02 0.63 16 29 H 0.05 0.64 7.84 -2.39 -0.02 0.62 16 30 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.07 0.99 5.49 -2.39 -0.01 0.98 16 32 H 0.07 0.92 7.31 -2.39 -0.02 0.90 16 33 H 0.34 6.59 8.51 -89.69 -0.76 5.83 16 34 H 0.07 1.67 6.16 -2.39 -0.01 1.65 16 35 H 0.05 1.02 6.18 -2.38 -0.01 1.01 16 36 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 37 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 39 H 0.10 5.18 5.83 -2.91 -0.02 5.16 16 40 H 0.12 4.04 8.06 -2.91 -0.02 4.02 16 41 H 0.10 1.21 7.99 -2.39 -0.02 1.19 16 42 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.06 0.83 6.99 -2.39 -0.02 0.81 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -66.01 358.16 3.37 -62.64 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.22 Total: 24.75 kcal Atomic # 6 Polarization: -52.89 SS G_CDS: 4.24 Total: -48.65 kcal Atomic # 7 Polarization: -70.10 SS G_CDS: -2.86 Total: -72.96 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -0.20 Total: -13.88 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.96 Total: 48.10 kcal Total: -66.01 3.37 -62.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840725863.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.243 kcal (2) G-P(sol) polarization free energy of solvation -66.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds