Wall clock time and date at job start Tue Mar 31 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46952 * 2 1 4 4 H 1.09002 * 109.46949 * 305.74880 * 3 2 1 5 5 N 1.46900 * 109.47034 * 185.75043 * 3 2 1 6 6 C 1.46907 * 110.99845 * 87.87786 * 5 3 2 7 7 C 1.50696 * 109.46925 * 174.87556 * 6 5 3 8 8 C 1.38302 * 119.93318 * 269.72623 * 7 6 5 9 9 C 1.38102 * 120.06748 * 179.72643 * 8 7 6 10 10 C 1.38877 * 119.92686 * 0.54836 * 9 8 7 11 11 O 1.35755 * 120.06496 * 179.74562 * 10 9 8 12 12 C 1.34830 * 116.99839 * 185.15659 * 11 10 9 13 13 H 1.08000 * 120.00148 * 5.29556 * 12 11 10 14 14 C 1.38654 * 119.99953 * 185.29569 * 12 11 10 15 15 N 1.31561 * 119.99875 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00142 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.46853 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47031 * 120.00066 * 16 14 12 19 19 H 1.48501 * 109.47033 * 240.00143 * 16 14 12 20 20 C 1.38872 * 119.86805 * 359.72905 * 10 9 8 21 21 C 1.38102 * 119.93170 * 359.97438 * 20 10 9 22 22 C 1.53005 * 109.47127 * 65.74915 * 3 2 1 23 23 H 1.08998 * 115.55358 * 330.67415 * 22 3 2 24 24 C 1.53001 * 117.51191 * 116.37235 * 22 3 2 25 25 C 1.53000 * 60.00013 * 107.47910 * 24 22 3 26 26 H 1.08992 * 117.51781 * 252.51371 * 25 24 22 27 27 C 1.53000 * 117.49953 * 107.48167 * 25 24 22 28 28 H 1.08990 * 109.47551 * 304.07374 * 1 2 3 29 29 H 1.09000 * 109.47057 * 64.07623 * 1 2 3 30 30 H 1.09004 * 109.46818 * 184.07161 * 1 2 3 31 31 H 1.08995 * 109.46892 * 239.99418 * 2 1 3 32 32 H 1.09005 * 109.46630 * 120.00030 * 2 1 3 33 33 H 1.00891 * 111.00126 * 323.92515 * 5 3 2 34 34 H 1.09004 * 109.47077 * 294.88174 * 6 5 3 35 35 H 1.08998 * 109.46807 * 54.87808 * 6 5 3 36 36 H 1.08001 * 119.96209 * 0.02562 * 8 7 6 37 37 H 1.07990 * 120.03241 * 180.27222 * 9 8 7 38 38 H 0.97001 * 119.99752 * 179.97438 * 15 14 12 39 39 H 1.08001 * 120.04023 * 180.02562 * 20 10 9 40 40 H 1.07996 * 119.96977 * 180.02562 * 21 20 10 41 41 H 1.08996 * 117.50217 * 359.97438 * 24 22 3 42 42 H 1.09002 * 117.49696 * 214.97221 * 24 22 3 43 43 H 1.09008 * 109.47224 * 351.38172 * 27 25 24 44 44 H 1.09000 * 109.47689 * 231.38045 * 27 25 24 45 45 H 1.09003 * 109.47107 * 111.37736 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5950 1.9851 -0.8341 5 7 3.5024 1.4448 -0.1388 6 6 3.8969 1.4407 -1.5539 7 6 5.3947 1.5701 -1.6581 8 6 5.9748 2.8226 -1.7444 9 6 7.3475 2.9447 -1.8344 10 6 8.1446 1.8076 -1.8495 11 8 9.4939 1.9242 -1.9431 12 6 10.2003 0.7817 -2.0603 13 1 9.6866 -0.1627 -2.1625 14 6 11.5863 0.8195 -2.0497 15 7 12.2121 1.9700 -1.9248 16 14 12.5651 -0.7634 -2.2114 17 1 11.6319 -1.9116 -2.3372 18 1 13.4264 -0.6916 -3.4189 19 1 13.4149 -0.9451 -1.0072 20 6 7.5588 0.5511 -1.7685 21 6 6.1859 0.4358 -1.6726 22 6 1.6513 2.1208 1.3152 23 1 0.7378 1.7527 1.7821 24 6 2.7842 2.5730 2.2389 25 6 1.9697 3.6100 1.4630 26 1 2.4559 4.1065 0.6233 27 6 0.9812 4.4685 2.2548 28 1 -0.3634 0.5757 0.8511 29 1 -0.3633 0.4493 -0.9243 30 1 -0.3633 -1.0251 0.0730 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.9136 0.6660 0.3535 34 1 3.5798 0.5062 -2.0167 35 1 3.4234 2.2786 -2.0655 36 1 5.3539 3.7063 -1.7366 37 1 7.8001 3.9231 -1.8973 38 1 13.1817 1.9963 -1.9170 39 1 8.1761 -0.3350 -1.7796 40 1 5.7297 -0.5410 -1.6091 41 1 3.8065 2.3869 1.9100 42 1 2.6158 2.5023 3.3136 43 1 0.9042 4.0879 3.2734 44 1 0.0021 4.4292 1.7773 45 1 1.3331 5.4999 2.2779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840725865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:58 Heat of formation + Delta-G solvation = 7.158462 kcal Electronic energy + Delta-G solvation = -22337.368709 eV Core-core repulsion = 19127.667736 eV Total energy + Delta-G solvation = -3209.700973 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.26555 -38.75157 -36.79452 -35.32232 -32.95923 -32.16699 -30.14291 -29.64190 -28.38683 -26.02150 -25.20032 -23.60917 -22.73898 -21.91867 -20.64321 -20.31760 -19.75497 -17.95483 -17.00161 -16.01133 -15.52149 -14.98421 -14.70902 -14.53691 -14.44443 -14.05023 -13.60694 -13.55499 -13.43287 -13.12928 -13.01500 -12.67660 -12.62963 -12.26815 -12.11812 -11.94772 -11.82394 -11.52466 -11.38761 -11.27261 -11.21300 -10.88068 -10.73506 -10.57901 -10.44495 -10.35609 -9.91990 -9.63111 -9.33520 -8.82687 -8.27791 -8.13451 -7.15480 -6.44269 -4.02908 2.25542 2.31818 3.12417 3.13845 3.19448 3.79044 3.97266 4.26090 4.54497 4.70639 4.76780 4.92392 5.00333 5.09779 5.12083 5.17285 5.26183 5.29999 5.33673 5.42027 5.49439 5.55835 5.60453 5.69513 5.74939 5.79303 5.80233 5.86167 5.91995 5.95242 5.98242 6.00125 6.12376 6.24715 6.35712 6.45704 6.47414 6.73843 6.93266 7.05975 7.16550 7.29846 7.38371 7.46012 7.53698 7.86267 8.01065 9.01639 9.72686 10.73993 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024264 B = 0.002928 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.698767 B = 9561.975289 C =10099.563979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.150 4.150 3 C 0.115 3.885 4 H 0.076 0.924 5 N -0.677 5.677 6 C 0.118 3.882 7 C -0.181 4.181 8 C -0.052 4.052 9 C -0.195 4.195 10 C 0.156 3.844 11 O -0.179 6.179 12 C -0.390 4.390 13 H 0.092 0.908 14 C 0.038 3.962 15 N -0.863 5.863 16 Si 0.940 3.060 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.276 1.276 20 C -0.234 4.234 21 C -0.066 4.066 22 C -0.149 4.149 23 H 0.100 0.900 24 C -0.161 4.161 25 C -0.148 4.148 26 H 0.104 0.896 27 C -0.122 4.122 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.342 0.658 34 H 0.026 0.974 35 H 0.068 0.932 36 H 0.110 0.890 37 H 0.115 0.885 38 H 0.269 0.731 39 H 0.125 0.875 40 H 0.102 0.898 41 H 0.113 0.887 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.206 -1.684 4.821 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.189 4.189 3 C 0.005 3.995 4 H 0.094 0.906 5 N -0.307 5.307 6 C -0.010 4.010 7 C -0.182 4.182 8 C -0.071 4.071 9 C -0.214 4.214 10 C 0.102 3.898 11 O -0.082 6.082 12 C -0.467 4.467 13 H 0.109 0.891 14 C -0.166 4.166 15 N -0.498 5.498 16 Si 0.765 3.235 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.201 1.201 20 C -0.254 4.254 21 C -0.085 4.085 22 C -0.168 4.168 23 H 0.117 0.883 24 C -0.198 4.198 25 C -0.166 4.166 26 H 0.122 0.878 27 C -0.179 4.179 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.161 0.839 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.134 0.866 38 H 0.079 0.921 39 H 0.143 0.857 40 H 0.120 0.880 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -20.742 -0.717 4.878 21.320 hybrid contribution 0.323 -1.841 -0.278 1.890 sum -20.419 -2.559 4.600 21.086 Atomic orbital electron populations 1.21757 0.95618 1.01391 1.01891 1.22207 0.96666 0.98055 1.02016 1.21081 0.88264 0.93830 0.96299 0.90609 1.60657 1.07117 1.50349 1.12585 1.20642 0.92693 0.99443 0.88205 1.19106 0.93653 0.93343 1.12138 1.20445 0.93301 0.96120 0.97241 1.20213 0.92764 0.96941 1.11470 1.19407 0.85161 0.93124 0.92137 1.83994 1.12120 1.33756 1.78354 1.21358 0.88541 0.85138 1.51652 0.89104 1.25289 0.95815 0.98815 0.96644 1.70051 1.09180 1.24530 1.46022 0.85655 0.79515 0.80042 0.78263 1.19136 1.20153 1.20141 1.21118 0.94884 0.97751 1.11609 1.20581 0.93173 0.96748 0.97980 1.22473 0.99696 0.96610 0.97980 0.88252 1.23070 0.98208 1.02591 0.95940 1.22240 1.01652 0.90429 1.02286 0.87808 1.21375 0.98159 0.99350 0.99054 0.92360 0.92856 0.93058 0.92104 0.91713 0.83887 0.95541 0.91347 0.87193 0.86647 0.92086 0.85714 0.88030 0.86881 0.90208 0.92988 0.92750 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.80 37.16 0.36 -0.77 16 2 C -0.15 -1.33 5.37 -26.73 -0.14 -1.47 16 3 C 0.12 1.14 2.40 -67.71 -0.16 0.98 16 4 H 0.08 0.79 7.67 -51.93 -0.40 0.39 16 5 N -0.68 -8.00 4.45 -107.98 -0.48 -8.48 16 6 C 0.12 1.55 5.64 -4.97 -0.03 1.52 16 7 C -0.18 -3.03 5.44 -104.57 -0.57 -3.60 16 8 C -0.05 -0.94 9.69 -39.61 -0.38 -1.32 16 9 C -0.19 -4.16 9.99 -39.39 -0.39 -4.55 16 10 C 0.16 3.78 6.65 -39.11 -0.26 3.52 16 11 O -0.18 -5.15 9.76 0.03 0.00 -5.15 16 12 C -0.39 -10.98 9.45 30.89 0.29 -10.69 16 13 H 0.09 2.37 5.28 -52.49 -0.28 2.09 16 14 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 15 N -0.86 -25.46 13.67 55.48 0.76 -24.70 16 16 Si 0.94 20.61 29.55 -169.99 -5.02 15.58 16 17 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 C -0.23 -5.10 9.14 -39.40 -0.36 -5.46 16 21 C -0.07 -1.19 9.69 -39.61 -0.38 -1.58 16 22 C -0.15 -1.44 5.23 -90.62 -0.47 -1.92 16 23 H 0.10 0.89 6.40 -51.93 -0.33 0.56 16 24 C -0.16 -1.73 9.48 -26.73 -0.25 -1.98 16 25 C -0.15 -1.52 6.10 -90.62 -0.55 -2.07 16 26 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 27 C -0.12 -1.05 10.19 37.16 0.38 -0.67 16 28 H 0.06 0.42 6.33 -51.93 -0.33 0.09 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.57 7.64 -51.93 -0.40 0.17 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.34 4.15 8.48 -39.30 -0.33 3.81 16 34 H 0.03 0.33 7.60 -51.93 -0.39 -0.07 16 35 H 0.07 0.87 7.86 -51.93 -0.41 0.46 16 36 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 38 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.13 2.74 5.70 -52.49 -0.30 2.44 16 40 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.11 1.43 6.91 -51.93 -0.36 1.07 16 42 H 0.08 0.79 8.05 -51.93 -0.42 0.38 16 43 H 0.05 0.42 7.90 -51.92 -0.41 0.01 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -29.36 365.68 -9.56 -38.91 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -7.30 Total: 7.41 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: -3.03 Total: -29.08 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: 0.28 Total: -33.19 kcal Atomic # 8 Polarization: -5.15 SS G_CDS: 0.00 Total: -5.15 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.36 -9.56 -38.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840725865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.072 kcal (2) G-P(sol) polarization free energy of solvation -29.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds