Wall clock time and date at job start Tue Mar 31 2020 05:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46952 * 2 1 4 4 H 1.09002 * 109.46949 * 305.74880 * 3 2 1 5 5 N 1.46900 * 109.47034 * 185.75043 * 3 2 1 6 6 C 1.46907 * 110.99845 * 87.87786 * 5 3 2 7 7 C 1.50696 * 109.46925 * 174.87556 * 6 5 3 8 8 C 1.38302 * 119.93318 * 269.72623 * 7 6 5 9 9 C 1.38102 * 120.06748 * 179.72643 * 8 7 6 10 10 C 1.38877 * 119.92686 * 0.54836 * 9 8 7 11 11 O 1.35755 * 120.06496 * 179.74562 * 10 9 8 12 12 C 1.34830 * 116.99839 * 185.15659 * 11 10 9 13 13 H 1.08000 * 120.00148 * 5.29556 * 12 11 10 14 14 C 1.38654 * 119.99953 * 185.29569 * 12 11 10 15 15 N 1.31561 * 119.99875 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00142 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.46853 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47031 * 120.00066 * 16 14 12 19 19 H 1.48501 * 109.47033 * 240.00143 * 16 14 12 20 20 C 1.38872 * 119.86805 * 359.72905 * 10 9 8 21 21 C 1.38102 * 119.93170 * 359.97438 * 20 10 9 22 22 C 1.53005 * 109.47127 * 65.74915 * 3 2 1 23 23 H 1.08998 * 115.55358 * 330.67415 * 22 3 2 24 24 C 1.53001 * 117.51191 * 116.37235 * 22 3 2 25 25 C 1.53000 * 60.00013 * 107.47910 * 24 22 3 26 26 H 1.08992 * 117.51781 * 252.51371 * 25 24 22 27 27 C 1.53000 * 117.49953 * 107.48167 * 25 24 22 28 28 H 1.08990 * 109.47551 * 304.07374 * 1 2 3 29 29 H 1.09000 * 109.47057 * 64.07623 * 1 2 3 30 30 H 1.09004 * 109.46818 * 184.07161 * 1 2 3 31 31 H 1.08995 * 109.46892 * 239.99418 * 2 1 3 32 32 H 1.09005 * 109.46630 * 120.00030 * 2 1 3 33 33 H 1.00891 * 111.00126 * 323.92515 * 5 3 2 34 34 H 1.09004 * 109.47077 * 294.88174 * 6 5 3 35 35 H 1.08998 * 109.46807 * 54.87808 * 6 5 3 36 36 H 1.08001 * 119.96209 * 0.02562 * 8 7 6 37 37 H 1.07990 * 120.03241 * 180.27222 * 9 8 7 38 38 H 0.97001 * 119.99752 * 179.97438 * 15 14 12 39 39 H 1.08001 * 120.04023 * 180.02562 * 20 10 9 40 40 H 1.07996 * 119.96977 * 180.02562 * 21 20 10 41 41 H 1.08996 * 117.50217 * 359.97438 * 24 22 3 42 42 H 1.09002 * 117.49696 * 214.97221 * 24 22 3 43 43 H 1.09008 * 109.47224 * 351.38172 * 27 25 24 44 44 H 1.09000 * 109.47689 * 231.38045 * 27 25 24 45 45 H 1.09003 * 109.47107 * 111.37736 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5950 1.9851 -0.8341 5 7 3.5024 1.4448 -0.1388 6 6 3.8969 1.4407 -1.5539 7 6 5.3947 1.5701 -1.6581 8 6 5.9748 2.8226 -1.7444 9 6 7.3475 2.9447 -1.8344 10 6 8.1446 1.8076 -1.8495 11 8 9.4939 1.9242 -1.9431 12 6 10.2003 0.7817 -2.0603 13 1 9.6866 -0.1627 -2.1625 14 6 11.5863 0.8195 -2.0497 15 7 12.2121 1.9700 -1.9248 16 14 12.5651 -0.7634 -2.2114 17 1 11.6319 -1.9116 -2.3372 18 1 13.4264 -0.6916 -3.4189 19 1 13.4149 -0.9451 -1.0072 20 6 7.5588 0.5511 -1.7685 21 6 6.1859 0.4358 -1.6726 22 6 1.6513 2.1208 1.3152 23 1 0.7378 1.7527 1.7821 24 6 2.7842 2.5730 2.2389 25 6 1.9697 3.6100 1.4630 26 1 2.4559 4.1065 0.6233 27 6 0.9812 4.4685 2.2548 28 1 -0.3634 0.5757 0.8511 29 1 -0.3633 0.4493 -0.9243 30 1 -0.3633 -1.0251 0.0730 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.9136 0.6660 0.3535 34 1 3.5798 0.5062 -2.0167 35 1 3.4234 2.2786 -2.0655 36 1 5.3539 3.7063 -1.7366 37 1 7.8001 3.9231 -1.8973 38 1 13.1817 1.9963 -1.9170 39 1 8.1761 -0.3350 -1.7796 40 1 5.7297 -0.5410 -1.6091 41 1 3.8065 2.3869 1.9100 42 1 2.6158 2.5023 3.3136 43 1 0.9042 4.0879 3.2734 44 1 0.0021 4.4292 1.7773 45 1 1.3331 5.4999 2.2779 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840725865.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:58 Heat of formation + Delta-G solvation = -8.271921 kcal Electronic energy + Delta-G solvation = -22338.037821 eV Core-core repulsion = 19127.667736 eV Total energy + Delta-G solvation = -3210.370085 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.80459 -39.82026 -38.39712 -36.30154 -34.39684 -33.67014 -31.76792 -30.88937 -29.26011 -27.58733 -26.56937 -24.78647 -23.61248 -23.41993 -21.99460 -21.28491 -20.60099 -19.81831 -18.83958 -17.08089 -16.52333 -16.29520 -16.27611 -15.73212 -15.66107 -15.44067 -15.23655 -15.06445 -14.39150 -14.26345 -14.04870 -13.78967 -13.69329 -13.61766 -13.38906 -13.03902 -12.80887 -12.73644 -12.62165 -12.35912 -12.26673 -12.12387 -12.10980 -12.02840 -11.93504 -11.32405 -11.18023 -10.79894 -10.71102 -10.41445 -9.75644 -9.21595 -8.87473 -8.47266 -6.15223 0.62369 0.70371 1.34612 1.43085 1.53080 2.17559 2.78776 2.99414 3.14683 3.51182 3.54750 3.79544 4.01927 4.05453 4.13525 4.17734 4.24791 4.30309 4.36905 4.45223 4.50283 4.59142 4.64036 4.69884 4.74388 4.84360 4.87158 4.91805 5.03427 5.07516 5.11474 5.14997 5.16265 5.21775 5.28468 5.30832 5.33858 5.45414 5.55057 5.59875 5.62252 5.73296 5.84342 6.03480 6.19390 6.29615 6.54778 6.97724 7.79689 8.76554 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024264 B = 0.002928 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.698767 B = 9561.975289 C =10099.563979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.119 3.881 4 H 0.077 0.923 5 N -0.683 5.683 6 C 0.124 3.876 7 C -0.152 4.152 8 C -0.048 4.048 9 C -0.207 4.207 10 C 0.113 3.887 11 O -0.235 6.235 12 C -0.411 4.411 13 H 0.101 0.899 14 C -0.024 4.024 15 N -0.922 5.922 16 Si 1.019 2.981 17 H -0.251 1.251 18 H -0.268 1.268 19 H -0.268 1.268 20 C -0.243 4.243 21 C -0.062 4.062 22 C -0.138 4.138 23 H 0.113 0.887 24 C -0.170 4.170 25 C -0.151 4.151 26 H 0.089 0.911 27 C -0.120 4.120 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.342 0.658 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.141 0.859 37 H 0.109 0.891 38 H 0.272 0.728 39 H 0.116 0.884 40 H 0.137 0.863 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.056 0.944 44 H 0.064 0.936 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.629 -3.288 5.073 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 C 0.009 3.991 4 H 0.096 0.904 5 N -0.314 5.314 6 C -0.005 4.005 7 C -0.153 4.153 8 C -0.066 4.066 9 C -0.226 4.226 10 C 0.063 3.937 11 O -0.141 6.141 12 C -0.488 4.488 13 H 0.118 0.882 14 C -0.222 4.222 15 N -0.560 5.560 16 Si 0.838 3.162 17 H -0.174 1.174 18 H -0.193 1.193 19 H -0.193 1.193 20 C -0.262 4.262 21 C -0.081 4.081 22 C -0.156 4.156 23 H 0.131 0.869 24 C -0.208 4.208 25 C -0.169 4.169 26 H 0.107 0.893 27 C -0.177 4.177 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.161 0.839 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.158 0.842 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.134 0.866 40 H 0.155 0.845 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.238 -2.321 5.134 24.884 hybrid contribution 1.006 -1.261 -0.316 1.644 sum -23.232 -3.582 4.818 23.995 Atomic orbital electron populations 1.21742 0.94576 1.01928 1.02233 1.22141 0.97526 0.96908 1.01860 1.21089 0.86811 0.94739 0.96422 0.90444 1.60576 1.08651 1.50608 1.11537 1.20612 0.89502 1.00968 0.89376 1.19620 0.95975 0.92243 1.07505 1.20809 0.91948 0.98098 0.95784 1.20450 0.94232 0.96100 1.11826 1.19937 0.84282 0.95206 0.94272 1.83952 1.14244 1.34482 1.81460 1.21838 0.89328 0.85581 1.52018 0.88208 1.26602 0.96655 1.02880 0.96016 1.70197 1.09601 1.27393 1.48856 0.84523 0.77740 0.75358 0.78537 1.17447 1.19317 1.19333 1.21223 0.96616 0.96437 1.11923 1.20938 0.91585 0.99013 0.96530 1.22514 0.99528 0.96074 0.97489 0.86941 1.23002 0.97503 1.03727 0.96545 1.22259 1.01839 0.90909 1.01916 0.89252 1.21362 0.98134 0.99043 0.99132 0.91937 0.92596 0.92499 0.92272 0.91876 0.83929 0.93793 0.90131 0.84161 0.87257 0.91857 0.86580 0.84499 0.88890 0.89564 0.92517 0.91743 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.80 71.98 0.71 -1.02 16 2 C -0.15 -2.05 5.37 30.59 0.16 -1.89 16 3 C 0.12 1.96 2.40 44.92 0.11 2.07 16 4 H 0.08 1.30 7.67 -2.39 -0.02 1.29 16 5 N -0.68 -13.99 4.45 -495.56 -2.20 -16.19 16 6 C 0.12 2.73 5.64 85.55 0.48 3.22 16 7 C -0.15 -4.66 5.44 -19.83 -0.11 -4.77 16 8 C -0.05 -1.64 9.69 22.25 0.22 -1.43 16 9 C -0.21 -9.04 9.99 22.39 0.22 -8.82 16 10 C 0.11 5.75 6.65 22.57 0.15 5.90 16 11 O -0.23 -14.41 9.76 -22.79 -0.22 -14.64 16 12 C -0.41 -24.33 9.45 67.92 0.64 -23.69 16 13 H 0.10 5.43 5.28 -2.91 -0.02 5.41 16 14 C -0.02 -1.40 5.49 84.83 0.47 -0.94 16 15 N -0.92 -57.41 13.67 21.61 0.30 -57.11 16 16 Si 1.02 43.33 29.55 68.60 2.03 45.35 16 17 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 18 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 19 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 20 C -0.24 -10.66 9.14 22.39 0.20 -10.45 16 21 C -0.06 -2.11 9.69 22.25 0.22 -1.89 16 22 C -0.14 -2.27 5.23 -10.79 -0.06 -2.33 16 23 H 0.11 1.61 6.40 -2.39 -0.02 1.59 16 24 C -0.17 -3.36 9.48 30.59 0.29 -3.07 16 25 C -0.15 -2.77 6.10 -10.79 -0.07 -2.84 16 26 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 27 C -0.12 -1.77 10.19 71.98 0.73 -1.04 16 28 H 0.06 0.68 6.33 -2.39 -0.02 0.67 16 29 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 0.87 7.64 -2.39 -0.02 0.86 16 32 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.34 7.23 8.48 -89.70 -0.76 6.47 16 34 H 0.04 0.87 7.60 -2.38 -0.02 0.85 16 35 H 0.08 1.67 7.86 -2.39 -0.02 1.65 16 36 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 37 H 0.11 4.78 8.06 -2.92 -0.02 4.76 16 38 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 39 H 0.12 5.21 5.70 -2.91 -0.02 5.20 16 40 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 41 H 0.09 2.23 6.91 -2.39 -0.02 2.21 16 42 H 0.09 1.57 8.05 -2.39 -0.02 1.55 16 43 H 0.06 0.79 7.90 -2.38 -0.02 0.77 16 44 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -68.37 365.68 4.48 -63.89 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.21 Total: 31.67 kcal Atomic # 6 Polarization: -57.34 SS G_CDS: 4.37 Total: -52.97 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -1.91 Total: -73.30 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.22 Total: -14.64 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -68.37 4.48 -63.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840725865.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.617 kcal (2) G-P(sol) polarization free energy of solvation -68.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds