Wall clock time and date at job start Tue Mar 31 2020 05:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46972 * 2 1 4 4 H 1.08992 * 109.47343 * 56.63979 * 3 2 1 5 5 N 1.46894 * 109.47256 * 296.63395 * 3 2 1 6 6 C 1.46897 * 111.00345 * 295.32518 * 5 3 2 7 7 C 1.50702 * 109.47263 * 184.82607 * 6 5 3 8 8 C 1.38300 * 119.93674 * 89.99601 * 7 6 5 9 9 C 1.38093 * 120.06996 * 179.97438 * 8 7 6 10 10 C 1.38882 * 119.93145 * 359.97438 * 9 8 7 11 11 O 1.35750 * 120.06650 * 179.97438 * 10 9 8 12 12 C 1.34831 * 117.00345 * 5.43444 * 11 10 9 13 13 H 1.08003 * 119.99839 * 354.91505 * 12 11 10 14 14 C 1.38657 * 120.00314 * 174.91959 * 12 11 10 15 15 N 1.31561 * 119.99573 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00270 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46920 * 269.99501 * 16 14 12 18 18 H 1.48502 * 109.47226 * 29.99293 * 16 14 12 19 19 H 1.48498 * 109.47681 * 149.99903 * 16 14 12 20 20 C 1.38869 * 119.86128 * 0.25414 * 10 9 8 21 21 C 1.38101 * 119.93041 * 359.49118 * 20 10 9 22 22 C 1.52999 * 109.46661 * 176.63591 * 3 2 1 23 23 H 1.09004 * 115.55354 * 34.28594 * 22 3 2 24 24 C 1.53005 * 117.50202 * 248.60625 * 22 3 2 25 25 C 1.53003 * 60.00145 * 252.51345 * 24 22 3 26 26 H 1.09002 * 117.49845 * 107.48514 * 25 24 22 27 27 C 1.52995 * 117.49773 * 252.50798 * 25 24 22 28 28 H 1.09002 * 109.47272 * 65.02683 * 1 2 3 29 29 H 1.08997 * 109.47166 * 185.03047 * 1 2 3 30 30 H 1.08997 * 109.46735 * 305.03139 * 1 2 3 31 31 H 1.09003 * 109.47149 * 240.00253 * 2 1 3 32 32 H 1.08996 * 109.47269 * 119.99937 * 2 1 3 33 33 H 1.00903 * 111.00217 * 171.36687 * 5 3 2 34 34 H 1.08994 * 109.47677 * 64.82181 * 6 5 3 35 35 H 1.09004 * 109.46863 * 304.81687 * 6 5 3 36 36 H 1.08000 * 119.96009 * 359.95550 * 8 7 6 37 37 H 1.08004 * 120.03467 * 180.02562 * 9 8 7 38 38 H 0.96996 * 120.00214 * 0.02562 * 15 14 12 39 39 H 1.08002 * 120.03553 * 179.72878 * 20 10 9 40 40 H 1.08005 * 119.96535 * 180.27451 * 21 20 10 41 41 H 1.08995 * 117.49234 * 0.02562 * 24 22 3 42 42 H 1.09001 * 117.49952 * 144.99717 * 24 22 3 43 43 H 1.09003 * 109.47478 * 128.62169 * 27 25 24 44 44 H 1.08994 * 109.47260 * 248.62428 * 27 25 24 45 45 H 1.09001 * 109.47045 * 8.62251 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6284 1.9735 0.8583 5 7 1.6179 2.1112 -1.2380 6 6 2.2443 1.4893 -2.4122 7 6 1.8832 2.2724 -3.6481 8 6 2.6871 3.3191 -4.0613 9 6 2.3591 4.0383 -5.1936 10 6 1.2208 3.7091 -5.9181 11 8 0.8955 4.4145 -7.0313 12 6 1.7767 5.3480 -7.4438 13 1 2.6524 5.5638 -6.8497 14 6 1.5585 6.0309 -8.6307 15 7 0.4920 5.7676 -9.3546 16 14 2.7796 7.3236 -9.2025 17 1 2.3891 8.6487 -8.6575 18 1 4.1381 6.9699 -8.7180 19 1 2.7824 7.3800 -10.6864 20 6 0.4130 2.6606 -5.4979 21 6 0.7493 1.9418 -4.3676 22 6 3.5677 1.4433 0.0846 23 1 4.0673 0.6203 -0.4265 24 6 4.2035 1.9633 1.3755 25 6 4.2739 2.8006 0.0968 26 1 3.6500 3.6929 0.0446 27 6 5.6274 2.8990 -0.6095 28 1 -0.3634 0.4339 -0.9316 29 1 -0.3633 -1.0237 0.0901 30 1 -0.3633 0.5899 0.8415 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8187 3.0993 -1.2018 34 1 1.8876 0.4644 -2.5143 35 1 3.3272 1.4864 -2.2875 36 1 3.5722 3.5745 -3.4975 37 1 2.9876 4.8553 -5.5161 38 1 -0.1419 5.0960 -9.0578 39 1 -0.4752 2.4050 -6.0566 40 1 0.1238 1.1234 -4.0428 41 1 3.5334 2.3045 2.1645 42 1 5.1213 1.4823 1.7137 43 1 5.5068 2.6466 -1.6630 44 1 6.0103 3.9157 -0.5210 45 1 6.3296 2.2049 -0.1477 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840725867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:01 Heat of formation + Delta-G solvation = -0.969946 kcal Electronic energy + Delta-G solvation = -22723.165878 eV Core-core repulsion = 19513.112430 eV Total energy + Delta-G solvation = -3210.053448 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.52737 -38.89392 -36.87471 -35.43932 -32.69916 -32.00430 -30.20038 -29.64815 -28.65620 -25.95296 -25.02944 -24.15928 -22.10628 -21.87964 -20.84576 -20.63782 -19.49972 -18.36544 -17.09665 -16.38289 -15.52506 -15.17084 -14.66318 -14.51146 -14.28098 -13.99678 -13.70604 -13.66111 -13.48817 -13.29969 -13.04658 -12.88635 -12.69505 -12.50406 -12.12544 -11.98535 -11.66592 -11.38056 -11.25898 -11.04778 -11.02949 -10.84909 -10.67943 -10.53033 -10.31832 -10.28065 -10.22046 -9.87589 -9.39105 -8.76199 -8.30717 -8.19776 -7.22744 -6.76452 -4.05588 2.18326 2.25773 3.23395 3.29541 3.43095 3.50497 4.11853 4.25806 4.34114 4.61865 4.67881 4.77524 4.95349 5.08093 5.09362 5.11587 5.18818 5.20971 5.37826 5.41629 5.45390 5.54475 5.56797 5.60549 5.69169 5.71912 5.81991 5.83583 5.86565 5.93241 5.95897 6.01399 6.08556 6.16829 6.20476 6.36277 6.40668 6.66148 6.85328 7.04471 7.16311 7.28218 7.34368 7.51443 7.58238 7.75801 8.41104 8.92983 9.62435 10.67730 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021126 B = 0.003384 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.061509 B = 8273.346881 C = 9401.321868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C 0.116 3.884 4 H 0.077 0.923 5 N -0.671 5.671 6 C 0.115 3.885 7 C -0.181 4.181 8 C -0.065 4.065 9 C -0.231 4.231 10 C 0.158 3.842 11 O -0.204 6.204 12 C -0.472 4.472 13 H 0.083 0.917 14 C 0.009 3.991 15 N -0.882 5.882 16 Si 1.098 2.902 17 H -0.281 1.281 18 H -0.283 1.283 19 H -0.275 1.275 20 C -0.197 4.197 21 C -0.053 4.053 22 C -0.181 4.181 23 H 0.101 0.899 24 C -0.173 4.173 25 C -0.150 4.150 26 H 0.102 0.898 27 C -0.123 4.123 28 H 0.068 0.932 29 H 0.044 0.956 30 H 0.048 0.952 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.340 0.660 34 H 0.069 0.931 35 H 0.034 0.966 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.282 0.718 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.092 0.908 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.408 -8.609 19.237 22.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C 0.006 3.994 4 H 0.095 0.905 5 N -0.300 5.300 6 C -0.013 4.013 7 C -0.183 4.183 8 C -0.084 4.084 9 C -0.250 4.250 10 C 0.105 3.895 11 O -0.108 6.108 12 C -0.548 4.548 13 H 0.101 0.899 14 C -0.196 4.196 15 N -0.515 5.515 16 Si 0.923 3.077 17 H -0.207 1.207 18 H -0.209 1.209 19 H -0.200 1.200 20 C -0.217 4.217 21 C -0.072 4.072 22 C -0.201 4.201 23 H 0.119 0.881 24 C -0.211 4.211 25 C -0.168 4.168 26 H 0.120 0.880 27 C -0.180 4.180 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.159 0.841 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.092 0.908 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.915 -7.871 17.750 20.298 hybrid contribution 0.780 -0.730 1.448 1.800 sum 6.696 -8.601 19.199 22.077 Atomic orbital electron populations 1.21638 0.95142 1.00417 1.02782 1.21519 0.96711 0.95215 1.01480 1.21271 0.89034 0.95874 0.93262 0.90457 1.60804 1.61098 1.07225 1.00912 1.20650 0.95944 0.97250 0.87410 1.19207 0.98815 1.01190 0.99051 1.20600 0.97818 0.94520 0.95487 1.21130 1.00597 1.04576 0.98678 1.19247 0.92503 0.90315 0.87440 1.83666 1.44705 1.45440 1.36988 1.22229 1.05747 1.17220 1.09583 0.89907 1.26529 1.01031 1.00670 0.91357 1.70540 1.10548 1.31588 1.38777 0.83056 0.73452 0.74262 0.76956 1.20708 1.20855 1.20045 1.20207 1.02349 0.98584 1.00524 1.20467 0.95340 0.97931 0.93435 1.23291 0.97262 0.97840 1.01664 0.88072 1.23114 1.02670 1.04012 0.91259 1.22299 0.98862 0.94938 1.00730 0.88035 1.21356 0.94478 1.01885 1.00291 0.91337 0.93732 0.93300 0.91940 0.92256 0.84120 0.91253 0.94827 0.87894 0.85632 0.90764 0.86809 0.87051 0.88982 0.89148 0.92036 0.92122 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.72 37.16 0.36 -1.02 16 2 C -0.11 -1.04 5.25 -26.73 -0.14 -1.19 16 3 C 0.12 1.13 2.71 -67.71 -0.18 0.95 16 4 H 0.08 0.75 7.90 -51.93 -0.41 0.34 16 5 N -0.67 -7.98 5.88 -108.00 -0.64 -8.62 16 6 C 0.12 1.52 5.16 -4.98 -0.03 1.49 16 7 C -0.18 -3.04 5.35 -104.57 -0.56 -3.60 16 8 C -0.07 -1.19 9.69 -39.61 -0.38 -1.57 16 9 C -0.23 -5.06 9.17 -39.40 -0.36 -5.43 16 10 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 11 O -0.20 -5.80 9.16 0.05 0.00 -5.80 16 12 C -0.47 -13.40 9.49 30.89 0.29 -13.10 16 13 H 0.08 2.22 5.20 -52.48 -0.27 1.94 16 14 C 0.01 0.26 5.49 -17.51 -0.10 0.17 16 15 N -0.88 -26.56 13.70 55.48 0.76 -25.80 16 16 Si 1.10 23.88 29.92 -169.99 -5.09 18.80 16 17 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 20 C -0.20 -4.19 9.99 -39.40 -0.39 -4.58 16 21 C -0.05 -0.95 9.69 -39.61 -0.38 -1.34 16 22 C -0.18 -1.67 3.37 -90.61 -0.31 -1.97 16 23 H 0.10 1.00 7.89 -51.93 -0.41 0.59 16 24 C -0.17 -1.43 9.82 -26.73 -0.26 -1.69 16 25 C -0.15 -1.39 5.81 -90.62 -0.53 -1.91 16 26 H 0.10 0.99 7.80 -51.93 -0.41 0.58 16 27 C -0.12 -1.11 10.19 37.15 0.38 -0.73 16 28 H 0.07 0.78 7.85 -51.93 -0.41 0.37 16 29 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.62 6.46 -51.93 -0.34 0.29 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.34 4.23 8.14 -39.29 -0.32 3.91 16 34 H 0.07 0.90 6.54 -51.93 -0.34 0.56 16 35 H 0.03 0.43 6.56 -51.93 -0.34 0.09 16 36 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 37 H 0.13 2.81 5.64 -52.48 -0.30 2.52 16 38 H 0.28 8.69 7.97 -40.82 -0.33 8.37 16 39 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 40 H 0.11 1.73 8.06 -52.48 -0.42 1.31 16 41 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 42 H 0.09 0.69 8.05 -51.93 -0.42 0.28 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.45 7.90 -51.93 -0.41 0.04 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -29.59 364.35 -9.60 -39.20 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -7.29 Total: 8.65 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: -2.85 Total: -31.92 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: 0.12 Total: -34.42 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: 0.00 Total: -5.80 kcal Atomic # 14 Polarization: 23.88 SS G_CDS: -5.09 Total: 18.80 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.59 -9.60 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840725867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.230 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds