Wall clock time and date at job start Tue Mar 31 2020 05:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46972 * 2 1 4 4 H 1.08992 * 109.47343 * 56.63979 * 3 2 1 5 5 N 1.46894 * 109.47256 * 296.63395 * 3 2 1 6 6 C 1.46897 * 111.00345 * 295.32518 * 5 3 2 7 7 C 1.50702 * 109.47263 * 184.82607 * 6 5 3 8 8 C 1.38300 * 119.93674 * 89.99601 * 7 6 5 9 9 C 1.38093 * 120.06996 * 179.97438 * 8 7 6 10 10 C 1.38882 * 119.93145 * 359.97438 * 9 8 7 11 11 O 1.35750 * 120.06650 * 179.97438 * 10 9 8 12 12 C 1.34831 * 117.00345 * 5.43444 * 11 10 9 13 13 H 1.08003 * 119.99839 * 354.91505 * 12 11 10 14 14 C 1.38657 * 120.00314 * 174.91959 * 12 11 10 15 15 N 1.31561 * 119.99573 * 359.97438 * 14 12 11 16 16 Si 1.86791 * 120.00270 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46920 * 269.99501 * 16 14 12 18 18 H 1.48502 * 109.47226 * 29.99293 * 16 14 12 19 19 H 1.48498 * 109.47681 * 149.99903 * 16 14 12 20 20 C 1.38869 * 119.86128 * 0.25414 * 10 9 8 21 21 C 1.38101 * 119.93041 * 359.49118 * 20 10 9 22 22 C 1.52999 * 109.46661 * 176.63591 * 3 2 1 23 23 H 1.09004 * 115.55354 * 34.28594 * 22 3 2 24 24 C 1.53005 * 117.50202 * 248.60625 * 22 3 2 25 25 C 1.53003 * 60.00145 * 252.51345 * 24 22 3 26 26 H 1.09002 * 117.49845 * 107.48514 * 25 24 22 27 27 C 1.52995 * 117.49773 * 252.50798 * 25 24 22 28 28 H 1.09002 * 109.47272 * 65.02683 * 1 2 3 29 29 H 1.08997 * 109.47166 * 185.03047 * 1 2 3 30 30 H 1.08997 * 109.46735 * 305.03139 * 1 2 3 31 31 H 1.09003 * 109.47149 * 240.00253 * 2 1 3 32 32 H 1.08996 * 109.47269 * 119.99937 * 2 1 3 33 33 H 1.00903 * 111.00217 * 171.36687 * 5 3 2 34 34 H 1.08994 * 109.47677 * 64.82181 * 6 5 3 35 35 H 1.09004 * 109.46863 * 304.81687 * 6 5 3 36 36 H 1.08000 * 119.96009 * 359.95550 * 8 7 6 37 37 H 1.08004 * 120.03467 * 180.02562 * 9 8 7 38 38 H 0.96996 * 120.00214 * 0.02562 * 15 14 12 39 39 H 1.08002 * 120.03553 * 179.72878 * 20 10 9 40 40 H 1.08005 * 119.96535 * 180.27451 * 21 20 10 41 41 H 1.08995 * 117.49234 * 0.02562 * 24 22 3 42 42 H 1.09001 * 117.49952 * 144.99717 * 24 22 3 43 43 H 1.09003 * 109.47478 * 128.62169 * 27 25 24 44 44 H 1.08994 * 109.47260 * 248.62428 * 27 25 24 45 45 H 1.09001 * 109.47045 * 8.62251 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6284 1.9735 0.8583 5 7 1.6179 2.1112 -1.2380 6 6 2.2443 1.4893 -2.4122 7 6 1.8832 2.2724 -3.6481 8 6 2.6871 3.3191 -4.0613 9 6 2.3591 4.0383 -5.1936 10 6 1.2208 3.7091 -5.9181 11 8 0.8955 4.4145 -7.0313 12 6 1.7767 5.3480 -7.4438 13 1 2.6524 5.5638 -6.8497 14 6 1.5585 6.0309 -8.6307 15 7 0.4920 5.7676 -9.3546 16 14 2.7796 7.3236 -9.2025 17 1 2.3891 8.6487 -8.6575 18 1 4.1381 6.9699 -8.7180 19 1 2.7824 7.3800 -10.6864 20 6 0.4130 2.6606 -5.4979 21 6 0.7493 1.9418 -4.3676 22 6 3.5677 1.4433 0.0846 23 1 4.0673 0.6203 -0.4265 24 6 4.2035 1.9633 1.3755 25 6 4.2739 2.8006 0.0968 26 1 3.6500 3.6929 0.0446 27 6 5.6274 2.8990 -0.6095 28 1 -0.3634 0.4339 -0.9316 29 1 -0.3633 -1.0237 0.0901 30 1 -0.3633 0.5899 0.8415 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8187 3.0993 -1.2018 34 1 1.8876 0.4644 -2.5143 35 1 3.3272 1.4864 -2.2875 36 1 3.5722 3.5745 -3.4975 37 1 2.9876 4.8553 -5.5161 38 1 -0.1419 5.0960 -9.0578 39 1 -0.4752 2.4050 -6.0566 40 1 0.1238 1.1234 -4.0428 41 1 3.5334 2.3045 2.1645 42 1 5.1213 1.4823 1.7137 43 1 5.5068 2.6466 -1.6630 44 1 6.0103 3.9157 -0.5210 45 1 6.3296 2.2049 -0.1477 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840725867.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:00 Heat of formation + Delta-G solvation = -17.140672 kcal Electronic energy + Delta-G solvation = -22723.867093 eV Core-core repulsion = 19513.112430 eV Total energy + Delta-G solvation = -3210.754663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.95844 -40.06963 -38.48178 -36.37889 -34.41478 -33.35681 -31.83962 -30.85542 -29.54163 -27.27659 -26.58925 -25.40414 -23.60607 -22.76305 -22.34755 -21.36577 -20.41567 -20.22562 -18.78084 -17.56947 -16.96191 -16.41314 -15.81635 -15.67500 -15.62894 -15.48161 -15.34051 -15.09512 -14.78437 -14.29007 -14.17152 -14.08053 -13.68956 -13.52968 -13.13504 -12.93176 -12.82622 -12.68541 -12.41399 -12.36973 -12.19940 -12.12349 -11.98085 -11.92957 -11.75036 -11.47122 -11.26900 -10.97025 -10.74799 -10.58127 -9.83755 -9.27369 -8.97011 -8.92382 -6.24688 0.54238 0.62549 1.47833 1.61280 1.76800 2.35309 2.73954 2.85871 3.10691 3.34219 3.54803 3.60066 3.96505 3.99650 4.02312 4.06366 4.14971 4.24477 4.36975 4.39901 4.46604 4.52222 4.56793 4.64811 4.78002 4.78615 4.88484 4.91734 4.94601 4.99253 5.02045 5.08857 5.18902 5.22224 5.24178 5.26121 5.27366 5.38690 5.45126 5.53922 5.58506 5.71315 5.79043 6.05385 6.20582 6.31039 6.52240 6.86507 7.63242 8.50421 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021126 B = 0.003384 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.061509 B = 8273.346881 C = 9401.321868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C 0.120 3.880 4 H 0.082 0.918 5 N -0.676 5.676 6 C 0.123 3.877 7 C -0.151 4.151 8 C -0.061 4.061 9 C -0.240 4.240 10 C 0.115 3.885 11 O -0.254 6.254 12 C -0.487 4.487 13 H 0.091 0.909 14 C -0.045 4.045 15 N -0.919 5.919 16 Si 1.147 2.853 17 H -0.264 1.264 18 H -0.259 1.259 19 H -0.273 1.273 20 C -0.206 4.206 21 C -0.048 4.048 22 C -0.182 4.182 23 H 0.099 0.901 24 C -0.162 4.162 25 C -0.158 4.158 26 H 0.096 0.904 27 C -0.123 4.123 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.338 0.662 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.135 0.865 37 H 0.115 0.885 38 H 0.260 0.740 39 H 0.112 0.888 40 H 0.144 0.856 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.195 -9.785 22.411 25.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C 0.011 3.989 4 H 0.100 0.900 5 N -0.305 5.305 6 C -0.005 4.005 7 C -0.152 4.152 8 C -0.079 4.079 9 C -0.259 4.259 10 C 0.066 3.934 11 O -0.162 6.162 12 C -0.563 4.563 13 H 0.108 0.892 14 C -0.241 4.241 15 N -0.554 5.554 16 Si 0.963 3.037 17 H -0.189 1.189 18 H -0.183 1.183 19 H -0.198 1.198 20 C -0.225 4.225 21 C -0.067 4.067 22 C -0.202 4.202 23 H 0.117 0.883 24 C -0.199 4.199 25 C -0.177 4.177 26 H 0.114 0.886 27 C -0.180 4.180 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.156 0.844 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.153 0.847 37 H 0.133 0.867 38 H 0.068 0.932 39 H 0.130 0.870 40 H 0.162 0.838 41 H 0.117 0.883 42 H 0.117 0.883 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.709 -9.090 20.995 24.142 hybrid contribution 0.237 -0.625 0.835 1.070 sum 7.947 -9.714 21.830 25.181 Atomic orbital electron populations 1.21609 0.95456 1.00846 1.01871 1.21517 0.96339 0.94861 1.01988 1.21277 0.89561 0.95969 0.92124 0.90009 1.60762 1.61210 1.07215 1.01322 1.20599 0.96784 0.97013 0.86093 1.19715 0.96858 0.99439 0.99233 1.20916 0.98913 0.93959 0.94144 1.21228 0.99860 1.04962 0.99850 1.19814 0.94536 0.91694 0.87391 1.83644 1.45977 1.47191 1.39410 1.22607 1.06129 1.17512 1.10036 0.89199 1.28394 1.01929 1.02405 0.91398 1.70681 1.11977 1.32765 1.39932 0.82548 0.72194 0.72261 0.76701 1.18883 1.18330 1.19772 1.20473 1.02093 0.98277 1.01646 1.20856 0.95949 0.97915 0.91955 1.23195 0.96627 0.97702 1.02657 0.88277 1.23165 1.02906 1.02940 0.90893 1.22316 0.98857 0.94738 1.01743 0.88581 1.21350 0.94640 1.02238 0.99742 0.93100 0.92914 0.93104 0.92284 0.90900 0.84351 0.90157 0.93677 0.84673 0.86743 0.93166 0.86994 0.83812 0.88294 0.88339 0.92931 0.91951 0.92064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.72 71.98 0.70 -1.61 16 2 C -0.11 -1.66 5.25 30.60 0.16 -1.50 16 3 C 0.12 1.94 2.71 44.92 0.12 2.06 16 4 H 0.08 1.30 7.90 -2.39 -0.02 1.28 16 5 N -0.68 -13.79 5.88 -495.60 -2.91 -16.70 16 6 C 0.12 2.77 5.16 85.56 0.44 3.21 16 7 C -0.15 -4.62 5.35 -19.83 -0.11 -4.73 16 8 C -0.06 -2.07 9.69 22.25 0.22 -1.86 16 9 C -0.24 -10.60 9.17 22.39 0.21 -10.39 16 10 C 0.12 5.82 6.65 22.58 0.15 5.97 16 11 O -0.25 -15.42 9.16 -22.74 -0.21 -15.62 16 12 C -0.49 -28.97 9.49 67.92 0.64 -28.33 16 13 H 0.09 4.99 5.20 -2.91 -0.02 4.98 16 14 C -0.05 -2.65 5.49 84.83 0.47 -2.18 16 15 N -0.92 -58.33 13.70 21.61 0.30 -58.03 16 16 Si 1.15 48.75 29.92 68.60 2.05 50.80 16 17 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 18 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 20 C -0.21 -8.83 9.99 22.39 0.22 -8.60 16 21 C -0.05 -1.63 9.69 22.25 0.22 -1.42 16 22 C -0.18 -2.71 3.37 -10.79 -0.04 -2.75 16 23 H 0.10 1.57 7.89 -2.38 -0.02 1.55 16 24 C -0.16 -2.11 9.82 30.60 0.30 -1.81 16 25 C -0.16 -2.44 5.81 -10.79 -0.06 -2.50 16 26 H 0.10 1.60 7.80 -2.39 -0.02 1.58 16 27 C -0.12 -1.88 10.19 71.98 0.73 -1.15 16 28 H 0.05 1.02 7.85 -2.39 -0.02 1.00 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.95 6.46 -2.39 -0.02 0.94 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.34 7.32 8.14 -89.69 -0.73 6.59 16 34 H 0.08 1.72 6.54 -2.39 -0.02 1.70 16 35 H 0.05 0.96 6.56 -2.38 -0.02 0.95 16 36 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 37 H 0.11 5.24 5.64 -2.91 -0.02 5.23 16 38 H 0.26 17.22 7.97 -92.71 -0.74 16.48 16 39 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 40 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 41 H 0.10 1.17 8.05 -2.39 -0.02 1.16 16 42 H 0.10 1.15 8.05 -2.39 -0.02 1.13 16 43 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.06 0.84 7.90 -2.39 -0.02 0.82 16 Total: -1.00 -68.46 364.35 3.87 -64.59 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.27 Total: 32.55 kcal Atomic # 6 Polarization: -61.96 SS G_CDS: 4.37 Total: -57.59 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -2.62 Total: -74.73 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.21 Total: -15.62 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.05 Total: 50.80 kcal Total: -68.46 3.87 -64.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840725867.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.452 kcal (2) G-P(sol) polarization free energy of solvation -68.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds