Wall clock time and date at job start Tue Mar 31 2020 06:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 110.66822 * 2 1 4 4 C 1.54696 * 110.91144 * 123.33493 * 2 1 3 5 5 C 1.51653 * 101.96003 * 143.65534 * 4 2 1 6 6 C 1.37727 * 132.09190 * 164.37371 * 5 4 2 7 7 C 1.38931 * 119.92335 * 180.90804 * 6 5 4 8 8 N 1.39940 * 120.19647 * 179.97438 * 7 6 5 9 9 C 1.46496 * 120.00309 * 180.02562 * 8 7 6 10 10 C 1.52999 * 109.47487 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46623 * 299.99762 * 10 9 8 12 12 C 1.52997 * 109.47269 * 59.99598 * 10 9 8 13 13 C 1.52997 * 109.47317 * 179.97438 * 10 9 8 14 14 C 1.50699 * 109.47078 * 179.97438 * 13 10 9 15 15 H 1.07999 * 120.00019 * 359.97438 * 14 13 10 16 16 C 1.37877 * 120.00129 * 180.02562 * 14 13 10 17 17 N 1.31513 * 119.99969 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99840 * 359.97438 * 16 14 13 19 19 H 1.48494 * 109.47087 * 90.00328 * 18 16 14 20 20 H 1.48500 * 109.47028 * 210.00109 * 18 16 14 21 21 H 1.48500 * 109.47023 * 330.00059 * 18 16 14 22 22 C 1.38884 * 119.61408 * 0.24992 * 7 6 5 23 23 C 1.37891 * 120.26523 * 359.30637 * 22 7 6 24 24 C 1.38862 * 107.05998 * 344.84834 * 5 4 2 25 25 O 1.36277 * 111.19046 * 358.55936 * 24 5 4 26 26 H 1.09004 * 109.46683 * 181.76073 * 1 2 3 27 27 H 1.08995 * 109.47306 * 301.76067 * 1 2 3 28 28 H 1.09000 * 109.47022 * 61.76766 * 1 2 3 29 29 H 1.08998 * 110.93024 * 25.48758 * 4 2 1 30 30 H 1.08999 * 110.93010 * 261.82341 * 4 2 1 31 31 H 1.08001 * 120.03745 * 0.89670 * 6 5 4 32 32 H 0.97004 * 119.99775 * 0.02562 * 8 7 6 33 33 H 1.09001 * 109.47464 * 59.99262 * 9 8 7 34 34 H 1.09002 * 109.47021 * 299.99653 * 9 8 7 35 35 H 1.09001 * 109.47002 * 179.97438 * 11 10 9 36 36 H 1.08993 * 109.46955 * 300.00075 * 11 10 9 37 37 H 1.09000 * 109.47050 * 59.99904 * 11 10 9 38 38 H 1.09000 * 109.47140 * 300.00547 * 12 10 9 39 39 H 1.09001 * 109.47230 * 59.99691 * 12 10 9 40 40 H 1.09001 * 109.47375 * 180.02562 * 12 10 9 41 41 H 1.09002 * 109.47153 * 299.99641 * 13 10 9 42 42 H 1.08996 * 109.46952 * 59.99813 * 13 10 9 43 43 H 0.96999 * 119.99716 * 179.97438 * 17 16 14 44 44 H 1.07998 * 119.86618 * 179.55761 * 22 7 6 45 45 H 1.07997 * 119.83226 * 180.25261 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0822 -0.7941 1.2073 5 6 3.3106 -1.4556 0.6131 6 6 4.4011 -2.0666 1.1914 7 6 5.4122 -2.5826 0.3903 8 7 6.5230 -3.2041 0.9719 9 6 7.5869 -3.7462 0.1233 10 6 8.6749 -4.3658 1.0025 11 6 9.2560 -3.2935 1.9264 12 6 8.0706 -5.4914 1.8444 13 6 9.7857 -4.9326 0.1161 14 6 10.8576 -5.5424 0.9823 15 1 10.7569 -5.5268 2.0574 16 6 11.9675 -6.1191 0.4022 17 7 12.9027 -6.6517 1.1580 18 14 12.1421 -6.1453 -1.4574 19 1 12.8521 -4.9205 -1.9052 20 1 12.9180 -7.3441 -1.8649 21 1 10.7949 -6.1924 -2.0805 22 6 5.3169 -2.4729 -0.9909 23 6 4.2190 -1.8686 -1.5659 24 6 3.2009 -1.3532 -0.7674 25 8 2.0394 -0.7365 -1.1248 26 1 -0.3633 -1.0272 0.0316 27 1 -0.3633 0.5409 0.8737 28 1 -0.3633 0.4861 -0.9054 29 1 1.3627 -1.5402 1.5445 30 1 2.3564 -0.1237 2.0218 31 1 4.4702 -2.1443 2.2664 32 1 6.5884 -3.2759 1.9371 33 1 8.0177 -2.9442 -0.4762 34 1 7.1728 -4.5097 -0.5353 35 1 10.0308 -3.7351 2.5532 36 1 9.6864 -2.4917 1.3267 37 1 8.4644 -2.8902 2.5579 38 1 7.2790 -5.0881 2.4759 39 1 7.6565 -6.2553 1.1862 40 1 8.8457 -5.9326 2.4712 41 1 9.3714 -5.6966 -0.5418 42 1 10.2163 -4.1309 -0.4839 43 1 13.6833 -7.0578 0.7499 44 1 6.1039 -2.8663 -1.6172 45 1 4.1501 -1.7907 -2.6409 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846749067.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:05 Heat of formation + Delta-G solvation = -38.653377 kcal Electronic energy + Delta-G solvation = -22613.054250 eV Core-core repulsion = 19401.366726 eV Total energy + Delta-G solvation = -3211.687524 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.93157 -39.83097 -38.25892 -35.23424 -34.06929 -33.96994 -31.79169 -30.36195 -29.24488 -27.98886 -27.22352 -26.95281 -24.28602 -23.30762 -22.51210 -21.77778 -19.69425 -18.89547 -18.34152 -17.90810 -17.65828 -16.49673 -16.24679 -15.77777 -15.50733 -15.27842 -15.03560 -14.53610 -14.51008 -14.25975 -14.23387 -14.03904 -13.87188 -13.63625 -13.35970 -13.17136 -12.98276 -12.84539 -12.79547 -12.62331 -12.29632 -12.17745 -12.08565 -11.85468 -11.74124 -11.57220 -11.43480 -11.14648 -10.88608 -10.70127 -10.30050 -9.73910 -8.21856 -7.98089 -6.22386 0.40623 0.65890 1.37109 1.39330 1.49480 2.38947 2.39784 2.62343 2.88059 3.13597 3.55286 3.69408 3.95704 4.01691 4.09530 4.10732 4.16656 4.29651 4.32534 4.42254 4.64215 4.68346 4.71603 4.75688 4.76064 4.79080 4.90332 4.97175 4.98010 5.04238 5.09371 5.13914 5.23721 5.28826 5.31824 5.40523 5.41234 5.42653 5.54129 5.55671 5.66815 5.69755 5.77640 6.25657 6.38696 6.52387 6.84917 6.92966 7.40258 8.94021 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.038454 B = 0.002844 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.968982 B = 9841.210853 C =10343.011695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.069 3.931 3 H 0.089 0.911 4 C -0.102 4.102 5 C -0.131 4.131 6 C -0.157 4.157 7 C 0.193 3.807 8 N -0.735 5.735 9 C 0.144 3.856 10 C -0.057 4.057 11 C -0.122 4.122 12 C -0.122 4.122 13 C -0.003 4.003 14 C -0.503 4.503 15 H 0.047 0.953 16 C 0.001 3.999 17 N -0.954 5.954 18 Si 0.939 3.061 19 H -0.271 1.271 20 H -0.291 1.291 21 H -0.247 1.247 22 C -0.178 4.178 23 C -0.096 4.096 24 C 0.016 3.984 25 O -0.328 6.328 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.067 0.933 29 H 0.099 0.901 30 H 0.108 0.892 31 H 0.137 0.863 32 H 0.403 0.597 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.039 0.961 36 H 0.045 0.955 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.040 0.960 41 H 0.018 0.982 42 H 0.016 0.984 43 H 0.262 0.738 44 H 0.132 0.868 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.339 13.789 -1.243 28.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.013 3.987 3 H 0.106 0.894 4 C -0.139 4.139 5 C -0.133 4.133 6 C -0.179 4.179 7 C 0.089 3.911 8 N -0.367 5.367 9 C 0.020 3.980 10 C -0.057 4.057 11 C -0.179 4.179 12 C -0.179 4.179 13 C -0.041 4.041 14 C -0.541 4.541 15 H 0.065 0.935 16 C -0.195 4.195 17 N -0.596 5.596 18 Si 0.763 3.237 19 H -0.197 1.197 20 H -0.217 1.217 21 H -0.170 1.170 22 C -0.201 4.201 23 C -0.115 4.115 24 C -0.030 4.030 25 O -0.244 6.244 26 H 0.080 0.920 27 H 0.120 0.880 28 H 0.086 0.914 29 H 0.118 0.882 30 H 0.127 0.873 31 H 0.155 0.845 32 H 0.240 0.760 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.059 0.941 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.150 0.850 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.172 13.639 -1.594 27.800 hybrid contribution 1.054 -0.505 -0.267 1.199 sum -23.118 13.133 -1.861 26.653 Atomic orbital electron populations 1.21887 0.90640 1.03444 1.04129 1.23575 0.96832 0.95371 0.82884 0.89352 1.21943 0.93647 0.99581 0.98692 1.20783 0.97015 1.01683 0.93783 1.19843 0.93637 1.04491 0.99955 1.17811 0.87968 0.93106 0.92225 1.44697 1.19629 1.63680 1.08645 1.21283 0.87018 0.96872 0.92848 1.20506 0.93957 0.95452 0.95779 1.21675 1.00021 0.97344 0.98896 1.21673 0.99415 0.97559 0.99288 1.19570 0.93674 0.95560 0.95270 1.21391 1.03341 1.35194 0.94180 0.93513 1.25909 0.95716 0.95172 1.02693 1.70057 1.10972 1.41192 1.37340 0.85829 0.79300 0.77572 0.80970 1.19662 1.21710 1.17004 1.20502 0.99859 1.06374 0.93356 1.20144 0.91274 1.00232 0.99888 1.19466 0.88945 1.01185 0.93400 1.86807 1.34642 1.63873 1.39095 0.91984 0.88049 0.91413 0.88233 0.87348 0.84486 0.75967 0.92492 0.92600 0.94153 0.93543 0.91908 0.91919 0.93606 0.94135 0.96395 0.96535 0.92919 0.84986 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.61 71.98 0.69 -0.82 16 2 C 0.07 1.09 4.25 31.17 0.13 1.23 16 3 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.10 -1.55 6.65 30.73 0.20 -1.34 16 5 C -0.13 -2.93 6.27 -19.53 -0.12 -3.05 16 6 C -0.16 -3.54 9.89 22.31 0.22 -3.32 16 7 C 0.19 4.85 6.66 38.17 0.25 5.10 16 8 N -0.74 -18.40 5.15 -339.20 -1.75 -20.15 16 9 C 0.14 4.16 3.81 86.38 0.33 4.49 16 10 C -0.06 -1.96 0.54 -52.18 -0.03 -1.99 16 11 C -0.12 -4.14 8.05 71.98 0.58 -3.56 16 12 C -0.12 -4.16 8.05 71.98 0.58 -3.58 16 13 C 0.00 -0.13 3.11 29.85 0.09 -0.03 16 14 C -0.50 -27.27 8.20 25.60 0.21 -27.06 16 15 H 0.05 2.77 5.92 -2.91 -0.02 2.75 16 16 C 0.00 0.06 5.47 84.65 0.46 0.52 16 17 N -0.95 -59.05 13.96 21.45 0.30 -58.75 16 18 Si 0.94 43.77 27.47 68.60 1.88 45.66 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 21 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 22 C -0.18 -4.54 9.30 22.34 0.21 -4.33 16 23 C -0.10 -2.41 10.06 22.44 0.23 -2.19 16 24 C 0.02 0.40 7.03 22.67 0.16 0.56 16 25 O -0.33 -7.92 10.82 -96.72 -1.05 -8.96 16 26 H 0.06 0.71 8.12 -2.38 -0.02 0.69 16 27 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.10 1.32 7.91 -2.39 -0.02 1.30 16 30 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 32 H 0.40 9.24 6.18 -92.71 -0.57 8.67 16 33 H 0.06 1.64 7.95 -2.39 -0.02 1.62 16 34 H 0.06 1.62 7.97 -2.39 -0.02 1.60 16 35 H 0.04 1.61 6.62 -2.39 -0.02 1.59 16 36 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.06 1.72 6.86 -2.39 -0.02 1.71 16 38 H 0.06 1.73 6.86 -2.39 -0.02 1.71 16 39 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.04 1.62 6.62 -2.39 -0.02 1.60 16 41 H 0.02 0.78 7.20 -2.39 -0.02 0.77 16 42 H 0.02 0.71 7.57 -2.39 -0.02 0.69 16 43 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.13 3.21 6.74 -2.91 -0.02 3.19 16 45 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -65.41 350.88 3.94 -61.47 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.34 Total: 20.13 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 4.20 Total: -39.40 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -1.45 Total: -78.90 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -1.05 Total: -8.96 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.66 kcal Total: -65.41 3.94 -61.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846749067.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.821 kcal (2) G-P(sol) polarization free energy of solvation -65.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds