Wall clock time and date at job start Tue Mar 31 2020 06:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47316 * 2 1 4 4 N 1.46495 * 109.47495 * 180.02562 * 3 2 1 5 5 C 1.34779 * 120.00131 * 90.00222 * 4 3 2 6 6 O 1.21282 * 119.99828 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99853 * 180.02562 * 5 4 3 8 8 C 1.50700 * 109.46552 * 179.97438 * 7 5 4 9 9 C 1.37640 * 120.12921 * 264.99237 * 8 7 5 10 10 C 1.38610 * 120.24865 * 179.97438 * 9 8 7 11 11 C 1.38657 * 120.50346 * 0.02562 * 10 9 8 12 12 C 1.37589 * 120.24744 * 0.02562 * 11 10 9 13 13 C 1.40705 * 120.12890 * 84.72637 * 8 7 5 14 14 C 1.41399 * 120.24108 * 359.97438 * 13 8 7 15 15 H 1.08003 * 120.00199 * 329.70676 * 14 13 8 16 16 C 1.39949 * 119.99616 * 149.70376 * 14 13 8 17 17 N 1.30823 * 119.99667 * 162.01296 * 16 14 13 18 18 Si 1.86799 * 120.00057 * 342.01692 * 16 14 13 19 19 H 1.48502 * 109.47158 * 95.40081 * 18 16 14 20 20 H 1.48494 * 109.46787 * 215.39922 * 18 16 14 21 21 H 1.48500 * 109.47187 * 335.39960 * 18 16 14 22 22 C 1.46501 * 119.99835 * 270.00020 * 4 3 2 23 23 C 1.52992 * 109.47231 * 299.99978 * 22 4 3 24 24 C 1.53003 * 109.46961 * 60.00324 * 22 4 3 25 25 H 1.09006 * 109.47649 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47459 * 299.99967 * 1 2 3 27 27 H 1.09004 * 109.47503 * 60.00188 * 1 2 3 28 28 H 1.09007 * 109.47001 * 240.00084 * 2 1 3 29 29 H 1.08995 * 109.46893 * 120.00338 * 2 1 3 30 30 H 1.09003 * 109.47219 * 59.99641 * 3 2 1 31 31 H 1.09005 * 109.47170 * 300.00505 * 3 2 1 32 32 H 1.09000 * 109.46614 * 299.99092 * 7 5 4 33 33 H 1.08994 * 109.47334 * 59.99764 * 7 5 4 34 34 H 1.08003 * 119.87118 * 0.02562 * 9 8 7 35 35 H 1.07999 * 119.74583 * 179.97438 * 10 9 8 36 36 H 1.07996 * 119.87233 * 179.97438 * 11 10 9 37 37 H 1.08000 * 120.13096 * 179.97438 * 12 11 10 38 38 H 0.96997 * 119.99798 * 179.97438 * 17 16 14 39 39 H 1.09007 * 109.47114 * 179.97438 * 22 4 3 40 40 H 1.08995 * 109.47347 * 60.00285 * 23 22 4 41 41 H 1.09000 * 109.46987 * 180.02562 * 23 22 4 42 42 H 1.09004 * 109.47267 * 299.99698 * 23 22 4 43 43 H 1.08994 * 109.47723 * 59.99449 * 24 22 4 44 44 H 1.08999 * 109.47276 * 180.02562 * 24 22 4 45 45 H 1.09007 * 109.46691 * 299.99628 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1784 1.4427 -1.1681 6 8 3.5715 1.4424 -2.2182 7 6 5.6854 1.4422 -1.1687 8 6 6.1870 1.4420 -2.5897 9 6 6.5146 0.2559 -3.2066 10 6 6.9757 0.2528 -4.5137 11 6 7.1131 1.4414 -5.2144 12 6 6.7926 2.6389 -4.6175 13 6 6.3171 2.6537 -3.2930 14 6 5.9778 3.8777 -2.6716 15 1 5.2059 3.9043 -1.9167 16 6 6.6423 5.0546 -3.0348 17 7 6.1189 6.2177 -2.7439 18 14 8.2766 4.9646 -3.9351 19 1 8.0430 5.0753 -5.3974 20 1 9.1501 6.0790 -3.4876 21 1 8.9359 3.6681 -3.6358 22 6 4.2380 1.4423 1.2678 23 6 3.8687 2.6914 2.0704 24 6 3.8687 0.1929 2.0700 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8932 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 6.0491 2.3319 -0.6547 33 1 6.0486 0.5520 -0.6553 34 1 6.4111 -0.6758 -2.6703 35 1 7.2308 -0.6825 -4.9897 36 1 7.4737 1.4271 -6.2323 37 1 6.9007 3.5636 -5.1649 38 1 6.5796 7.0334 -2.9953 39 1 5.3096 1.4419 1.0682 40 1 2.7971 2.6913 2.2701 41 1 4.4144 2.6914 3.0140 42 1 4.1318 3.5815 1.4989 43 1 4.1317 -0.6970 1.4983 44 1 4.4137 0.1929 3.0140 45 1 2.7971 0.1929 2.2696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847172670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:37 Heat of formation + Delta-G solvation = -33.304909 kcal Electronic energy + Delta-G solvation = -23880.207742 eV Core-core repulsion = 20668.752145 eV Total energy + Delta-G solvation = -3211.455597 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.75355 -37.80029 -36.28976 -33.89977 -33.53194 -31.73348 -30.98407 -30.26263 -27.63560 -27.23185 -25.66543 -24.58452 -21.73831 -21.57334 -21.25506 -19.90190 -18.31747 -17.29084 -16.88589 -15.91079 -15.38189 -15.05772 -14.51643 -14.30195 -14.02302 -13.95541 -13.66008 -13.42738 -13.19046 -12.85822 -12.61254 -12.58686 -12.19478 -12.07455 -11.92266 -11.76911 -11.59870 -11.40954 -11.33476 -11.05763 -11.01561 -10.76340 -10.74014 -10.67351 -10.38567 -10.18898 -9.65700 -9.48852 -9.07610 -9.05104 -8.27774 -7.53768 -7.43741 -6.88293 -4.41723 2.62010 2.77390 3.16191 3.23451 3.35809 3.38208 3.44129 4.03378 4.56388 4.82135 4.98973 5.03732 5.17381 5.22768 5.32407 5.37775 5.50022 5.58151 5.65585 5.71407 5.74395 5.82816 5.87858 5.91352 5.93415 6.00837 6.07258 6.13065 6.14516 6.23802 6.28599 6.32209 6.33847 6.42745 6.64205 6.77946 6.99461 7.01118 7.26621 7.48889 7.72239 7.80090 7.90609 7.97899 8.20789 8.42189 8.74864 8.88423 8.91021 10.14033 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016779 B = 0.005366 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.399273 B = 5217.043402 C = 5902.079089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.116 3.884 4 N -0.619 5.619 5 C 0.519 3.481 6 O -0.519 6.519 7 C -0.073 4.073 8 C -0.165 4.165 9 C -0.070 4.070 10 C -0.242 4.242 11 C -0.081 4.081 12 C -0.233 4.233 13 C 0.110 3.890 14 C -0.443 4.443 15 H 0.088 0.912 16 C 0.085 3.915 17 N -0.811 5.811 18 Si 0.909 3.091 19 H -0.272 1.272 20 H -0.293 1.293 21 H -0.244 1.244 22 C 0.129 3.871 23 C -0.165 4.165 24 C -0.164 4.164 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.283 0.717 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.688 -8.161 10.386 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.183 4.183 3 C -0.007 4.007 4 N -0.354 5.354 5 C 0.308 3.692 6 O -0.393 6.393 7 C -0.113 4.113 8 C -0.167 4.167 9 C -0.088 4.088 10 C -0.261 4.261 11 C -0.099 4.099 12 C -0.252 4.252 13 C 0.107 3.893 14 C -0.472 4.472 15 H 0.106 0.894 16 C -0.133 4.133 17 N -0.435 5.435 18 Si 0.736 3.264 19 H -0.198 1.198 20 H -0.220 1.220 21 H -0.167 1.167 22 C 0.025 3.975 23 C -0.223 4.223 24 C -0.222 4.222 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.116 0.884 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -4.045 -7.852 9.836 13.220 hybrid contribution 0.559 0.191 -0.385 0.705 sum -3.486 -7.662 9.451 12.656 Atomic orbital electron populations 1.21692 0.95714 1.01449 1.01748 1.22063 0.95675 0.97944 1.02578 1.21333 0.80376 0.96325 1.02622 1.48142 1.05899 1.75576 1.05832 1.21082 0.90711 0.74799 0.82611 1.90676 1.70209 1.47520 1.30906 1.20328 0.90671 1.02845 0.97448 1.19108 1.10097 0.93561 0.93949 1.20420 0.98114 0.95623 0.94655 1.20319 1.13390 0.96297 0.96100 1.20585 0.98564 0.93191 0.97559 1.20988 1.11768 0.96361 0.96115 1.17483 0.88562 0.92686 0.90606 1.19404 1.18040 0.89633 1.20090 0.89362 1.26148 0.99434 0.94618 0.93137 1.69711 1.37221 0.98920 1.37677 0.86353 0.81591 0.78997 0.79469 1.19786 1.22029 1.16703 1.21128 0.97480 0.94888 0.84005 1.22175 1.01741 0.98261 1.00086 1.22296 1.02057 0.97892 0.99918 0.92867 0.92946 0.92544 0.91668 0.91604 0.91253 0.90182 0.88323 0.90560 0.89198 0.89067 0.89055 0.88375 0.90655 0.88640 0.92497 0.91703 0.91600 0.92287 0.91814 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.14 -1.80 5.98 -26.73 -0.16 -1.96 16 3 C 0.12 1.66 4.83 -4.05 -0.02 1.64 16 4 N -0.62 -9.72 2.40 -166.11 -0.40 -10.12 16 5 C 0.52 10.48 7.27 -10.98 -0.08 10.40 16 6 O -0.52 -12.80 15.61 5.56 0.09 -12.72 16 7 C -0.07 -1.44 3.50 -29.03 -0.10 -1.54 16 8 C -0.17 -3.89 4.43 -103.91 -0.46 -4.35 16 9 C -0.07 -1.54 9.66 -39.66 -0.38 -1.92 16 10 C -0.24 -5.32 10.05 -39.29 -0.39 -5.71 16 11 C -0.08 -1.86 10.02 -39.66 -0.40 -2.26 16 12 C -0.23 -5.93 7.17 -38.88 -0.28 -6.21 16 13 C 0.11 2.86 5.10 -106.82 -0.54 2.32 16 14 C -0.44 -12.10 8.56 -37.74 -0.32 -12.42 16 15 H 0.09 2.55 6.99 -52.48 -0.37 2.18 16 16 C 0.08 2.25 5.41 -17.34 -0.09 2.16 16 17 N -0.81 -21.89 13.93 55.55 0.77 -21.12 16 18 Si 0.91 21.14 24.52 -169.99 -4.17 16.98 16 19 H -0.27 -6.23 6.71 56.52 0.38 -5.85 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.24 -5.77 6.85 56.52 0.39 -5.38 16 22 C 0.13 1.58 3.17 -67.93 -0.22 1.36 16 23 C -0.16 -1.85 9.17 37.15 0.34 -1.51 16 24 C -0.16 -1.59 8.14 37.16 0.30 -1.28 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 29 H 0.07 0.73 5.44 -51.93 -0.28 0.45 16 30 H 0.07 0.83 6.43 -51.93 -0.33 0.50 16 31 H 0.08 1.36 7.42 -51.93 -0.39 0.97 16 32 H 0.10 1.94 6.80 -51.93 -0.35 1.59 16 33 H 0.08 1.24 7.70 -51.93 -0.40 0.84 16 34 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 35 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 36 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 37 H 0.10 2.49 4.74 -52.49 -0.25 2.24 16 38 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 39 H 0.10 1.17 5.77 -51.93 -0.30 0.88 16 40 H 0.06 0.59 6.66 -51.93 -0.35 0.25 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.57 6.17 -51.93 -0.32 0.25 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -30.92 351.22 -8.01 -38.93 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -7.16 Total: 5.22 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -2.44 Total: -22.46 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: 0.38 Total: -31.23 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.17 Total: 16.98 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.92 -8.01 -38.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847172670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.624 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds