Wall clock time and date at job start Tue Mar 31 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47316 * 2 1 4 4 N 1.46495 * 109.47495 * 180.02562 * 3 2 1 5 5 C 1.34779 * 120.00131 * 90.00222 * 4 3 2 6 6 O 1.21282 * 119.99828 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99853 * 180.02562 * 5 4 3 8 8 C 1.50700 * 109.46552 * 179.97438 * 7 5 4 9 9 C 1.37640 * 120.12921 * 264.99237 * 8 7 5 10 10 C 1.38610 * 120.24865 * 179.97438 * 9 8 7 11 11 C 1.38657 * 120.50346 * 0.02562 * 10 9 8 12 12 C 1.37589 * 120.24744 * 0.02562 * 11 10 9 13 13 C 1.40705 * 120.12890 * 84.72637 * 8 7 5 14 14 C 1.41399 * 120.24108 * 359.97438 * 13 8 7 15 15 H 1.08003 * 120.00199 * 329.70676 * 14 13 8 16 16 C 1.39949 * 119.99616 * 149.70376 * 14 13 8 17 17 N 1.30823 * 119.99667 * 162.01296 * 16 14 13 18 18 Si 1.86799 * 120.00057 * 342.01692 * 16 14 13 19 19 H 1.48502 * 109.47158 * 95.40081 * 18 16 14 20 20 H 1.48494 * 109.46787 * 215.39922 * 18 16 14 21 21 H 1.48500 * 109.47187 * 335.39960 * 18 16 14 22 22 C 1.46501 * 119.99835 * 270.00020 * 4 3 2 23 23 C 1.52992 * 109.47231 * 299.99978 * 22 4 3 24 24 C 1.53003 * 109.46961 * 60.00324 * 22 4 3 25 25 H 1.09006 * 109.47649 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47459 * 299.99967 * 1 2 3 27 27 H 1.09004 * 109.47503 * 60.00188 * 1 2 3 28 28 H 1.09007 * 109.47001 * 240.00084 * 2 1 3 29 29 H 1.08995 * 109.46893 * 120.00338 * 2 1 3 30 30 H 1.09003 * 109.47219 * 59.99641 * 3 2 1 31 31 H 1.09005 * 109.47170 * 300.00505 * 3 2 1 32 32 H 1.09000 * 109.46614 * 299.99092 * 7 5 4 33 33 H 1.08994 * 109.47334 * 59.99764 * 7 5 4 34 34 H 1.08003 * 119.87118 * 0.02562 * 9 8 7 35 35 H 1.07999 * 119.74583 * 179.97438 * 10 9 8 36 36 H 1.07996 * 119.87233 * 179.97438 * 11 10 9 37 37 H 1.08000 * 120.13096 * 179.97438 * 12 11 10 38 38 H 0.96997 * 119.99798 * 179.97438 * 17 16 14 39 39 H 1.09007 * 109.47114 * 179.97438 * 22 4 3 40 40 H 1.08995 * 109.47347 * 60.00285 * 23 22 4 41 41 H 1.09000 * 109.46987 * 180.02562 * 23 22 4 42 42 H 1.09004 * 109.47267 * 299.99698 * 23 22 4 43 43 H 1.08994 * 109.47723 * 59.99449 * 24 22 4 44 44 H 1.08999 * 109.47276 * 180.02562 * 24 22 4 45 45 H 1.09007 * 109.46691 * 299.99628 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1784 1.4427 -1.1681 6 8 3.5715 1.4424 -2.2182 7 6 5.6854 1.4422 -1.1687 8 6 6.1870 1.4420 -2.5897 9 6 6.5146 0.2559 -3.2066 10 6 6.9757 0.2528 -4.5137 11 6 7.1131 1.4414 -5.2144 12 6 6.7926 2.6389 -4.6175 13 6 6.3171 2.6537 -3.2930 14 6 5.9778 3.8777 -2.6716 15 1 5.2059 3.9043 -1.9167 16 6 6.6423 5.0546 -3.0348 17 7 6.1189 6.2177 -2.7439 18 14 8.2766 4.9646 -3.9351 19 1 8.0430 5.0753 -5.3974 20 1 9.1501 6.0790 -3.4876 21 1 8.9359 3.6681 -3.6358 22 6 4.2380 1.4423 1.2678 23 6 3.8687 2.6914 2.0704 24 6 3.8687 0.1929 2.0700 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8901 29 1 1.8932 -0.5139 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 6.0491 2.3319 -0.6547 33 1 6.0486 0.5520 -0.6553 34 1 6.4111 -0.6758 -2.6703 35 1 7.2308 -0.6825 -4.9897 36 1 7.4737 1.4271 -6.2323 37 1 6.9007 3.5636 -5.1649 38 1 6.5796 7.0334 -2.9953 39 1 5.3096 1.4419 1.0682 40 1 2.7971 2.6913 2.2701 41 1 4.4144 2.6914 3.0140 42 1 4.1318 3.5815 1.4989 43 1 4.1317 -0.6970 1.4983 44 1 4.4137 0.1929 3.0140 45 1 2.7971 0.1929 2.2696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847172670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:36 Heat of formation + Delta-G solvation = -50.600044 kcal Electronic energy + Delta-G solvation = -23880.957715 eV Core-core repulsion = 20668.752145 eV Total energy + Delta-G solvation = -3212.205570 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.21258 -39.52386 -37.72191 -35.48729 -34.95151 -33.40290 -32.21042 -32.11078 -29.16980 -28.08304 -27.19411 -26.24640 -23.27401 -22.90315 -22.56975 -21.56400 -19.65361 -19.23447 -18.30810 -17.58232 -16.89390 -16.61798 -16.07138 -15.66556 -15.53179 -15.44326 -14.96949 -14.80990 -14.57433 -14.25286 -14.00222 -13.85693 -13.74131 -13.47243 -13.17215 -12.97981 -12.91234 -12.74493 -12.68220 -12.51461 -12.46374 -12.37271 -12.02555 -11.97694 -11.76413 -11.54075 -11.44924 -11.29575 -10.97074 -10.67724 -9.58460 -9.40225 -9.28258 -8.86394 -6.44695 0.79799 0.90235 1.26698 1.39475 1.49023 1.81622 2.13220 2.15995 2.64365 3.48651 3.80801 3.92690 4.04529 4.09701 4.22772 4.26916 4.30286 4.35953 4.41274 4.44919 4.55674 4.56324 4.69632 4.71080 4.79930 4.83822 4.90583 4.93281 4.95478 5.00221 5.09895 5.12754 5.16224 5.24328 5.25063 5.37490 5.40871 5.46557 5.67127 5.78059 5.86824 5.95276 6.05246 6.29538 6.45294 6.52873 6.80992 6.90824 7.39229 8.21828 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016779 B = 0.005366 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.399273 B = 5217.043402 C = 5902.079089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.134 4.134 3 C 0.113 3.887 4 N -0.610 5.610 5 C 0.514 3.486 6 O -0.578 6.578 7 C -0.070 4.070 8 C -0.173 4.173 9 C -0.080 4.080 10 C -0.229 4.229 11 C -0.091 4.091 12 C -0.256 4.256 13 C 0.083 3.917 14 C -0.468 4.468 15 H 0.053 0.947 16 C 0.048 3.952 17 N -0.853 5.853 18 Si 0.964 3.036 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.250 1.250 22 C 0.118 3.882 23 C -0.160 4.160 24 C -0.155 4.155 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.034 0.966 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.291 0.709 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.033 0.967 43 H 0.055 0.945 44 H 0.089 0.911 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 -10.856 11.809 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.172 4.172 3 C -0.009 4.009 4 N -0.344 5.344 5 C 0.304 3.696 6 O -0.457 6.457 7 C -0.109 4.109 8 C -0.174 4.174 9 C -0.098 4.098 10 C -0.248 4.248 11 C -0.109 4.109 12 C -0.275 4.275 13 C 0.081 3.919 14 C -0.498 4.498 15 H 0.071 0.929 16 C -0.166 4.166 17 N -0.480 5.480 18 Si 0.788 3.212 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.174 1.174 22 C 0.016 3.984 23 C -0.218 4.218 24 C -0.213 4.213 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.133 0.867 34 H 0.142 0.858 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.086 0.914 41 H 0.111 0.889 42 H 0.052 0.948 43 H 0.074 0.926 44 H 0.108 0.892 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.272 -10.552 11.317 15.816 hybrid contribution 0.261 0.847 -0.786 1.184 sum -3.011 -9.705 10.532 14.635 Atomic orbital electron populations 1.21679 0.93998 1.02521 1.02072 1.21974 0.97113 0.96043 1.02110 1.21468 0.79500 0.97836 1.02129 1.48209 1.06702 1.73500 1.05962 1.21158 0.90958 0.74407 0.83094 1.90641 1.71155 1.50719 1.33169 1.20332 0.90554 1.04205 0.95840 1.19588 1.08813 0.93372 0.95648 1.20877 0.97301 0.96384 0.95220 1.20864 1.10586 0.97417 0.95900 1.20972 0.98219 0.92635 0.99116 1.21134 1.12964 0.97356 0.96070 1.17727 0.89595 0.93239 0.91382 1.19290 1.18597 0.91198 1.20727 0.92892 1.26785 1.01908 0.94069 0.93800 1.69745 1.38776 0.99587 1.39877 0.85510 0.78220 0.78923 0.78535 1.19404 1.20310 1.17378 1.21481 0.97148 0.97056 0.82748 1.22148 1.02854 0.96212 1.00591 1.22228 1.02992 0.95709 1.00350 0.91406 0.90926 0.93962 0.94674 0.89347 0.88477 0.93871 0.89130 0.86719 0.85771 0.85341 0.85999 0.89159 0.89883 0.88818 0.91416 0.88872 0.94806 0.92582 0.89179 0.91192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.91 71.98 0.71 -2.09 16 2 C -0.13 -3.20 5.98 30.59 0.18 -3.02 16 3 C 0.11 3.24 4.83 86.38 0.42 3.65 16 4 N -0.61 -19.24 2.40 -797.83 -1.91 -21.15 16 5 C 0.51 21.41 7.27 87.66 0.64 22.05 16 6 O -0.58 -30.01 15.61 -3.04 -0.05 -30.06 16 7 C -0.07 -2.76 3.50 29.10 0.10 -2.66 16 8 C -0.17 -8.13 4.43 -19.40 -0.09 -8.21 16 9 C -0.08 -3.34 9.66 22.22 0.21 -3.13 16 10 C -0.23 -9.34 10.05 22.46 0.23 -9.11 16 11 C -0.09 -4.03 10.02 22.22 0.22 -3.81 16 12 C -0.26 -13.08 7.17 22.73 0.16 -12.92 16 13 C 0.08 4.46 5.10 -21.29 -0.11 4.35 16 14 C -0.47 -27.08 8.56 23.46 0.20 -26.88 16 15 H 0.05 3.32 6.99 -2.91 -0.02 3.30 16 16 C 0.05 2.67 5.41 85.26 0.46 3.13 16 17 N -0.85 -48.38 13.93 21.83 0.30 -48.07 16 18 Si 0.96 44.61 24.52 68.60 1.68 46.30 16 19 H -0.27 -12.10 6.71 99.48 0.67 -11.43 16 20 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 21 H -0.25 -11.68 6.85 99.48 0.68 -11.00 16 22 C 0.12 2.71 3.17 44.99 0.14 2.85 16 23 C -0.16 -3.37 9.17 71.98 0.66 -2.71 16 24 C -0.16 -2.46 8.14 71.98 0.59 -1.87 16 25 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 26 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.09 1.71 5.44 -2.39 -0.01 1.69 16 30 H 0.10 2.20 6.43 -2.39 -0.02 2.19 16 31 H 0.04 1.56 7.42 -2.38 -0.02 1.54 16 32 H 0.09 3.72 6.80 -2.39 -0.02 3.70 16 33 H 0.11 3.52 7.70 -2.39 -0.02 3.50 16 34 H 0.12 4.30 8.06 -2.91 -0.02 4.28 16 35 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 36 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 37 H 0.09 4.65 4.74 -2.91 -0.01 4.64 16 38 H 0.29 14.87 8.30 -92.71 -0.77 14.10 16 39 H 0.09 2.18 5.77 -2.38 -0.01 2.17 16 40 H 0.07 1.26 6.66 -2.39 -0.02 1.25 16 41 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.07 1.01 6.17 -2.38 -0.01 1.00 16 Total: -1.00 -72.07 351.22 5.66 -66.41 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: 0.90 Total: 26.96 kcal Atomic # 6 Polarization: -45.12 SS G_CDS: 4.73 Total: -40.39 kcal Atomic # 7 Polarization: -67.62 SS G_CDS: -1.61 Total: -69.23 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.05 Total: -30.06 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.68 Total: 46.30 kcal Total: -72.07 5.66 -66.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847172670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.813 kcal (2) G-P(sol) polarization free energy of solvation -72.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds