Wall clock time and date at job start Tue Mar 31 2020 06:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46481 * 2 1 4 4 H 1.08997 * 109.46979 * 55.00238 * 3 2 1 5 5 C 1.53008 * 109.46785 * 174.99671 * 3 2 1 6 6 N 1.46494 * 109.47522 * 294.99516 * 3 2 1 7 7 C 1.46500 * 120.00363 * 300.00940 * 6 3 2 8 8 C 1.53001 * 109.46636 * 269.99702 * 7 6 3 9 9 C 1.34782 * 119.99658 * 119.99939 * 6 3 2 10 10 O 1.21279 * 120.00160 * 0.02562 * 9 6 3 11 11 C 1.50698 * 119.99655 * 179.72713 * 9 6 3 12 12 C 1.50701 * 109.46981 * 180.02562 * 11 9 6 13 13 C 1.37638 * 120.13244 * 265.00157 * 12 11 9 14 14 C 1.38604 * 120.25239 * 179.97438 * 13 12 11 15 15 C 1.38660 * 120.49904 * 0.02562 * 14 13 12 16 16 C 1.37590 * 120.24937 * 0.02653 * 15 14 13 17 17 C 1.40700 * 120.12581 * 84.73127 * 12 11 9 18 18 C 1.41395 * 120.24519 * 359.97438 * 17 12 11 19 19 H 1.08004 * 120.00118 * 333.89712 * 18 17 12 20 20 C 1.39944 * 120.00184 * 153.88965 * 18 17 12 21 21 N 1.30828 * 119.99966 * 343.72897 * 20 18 17 22 22 Si 1.86800 * 120.00082 * 163.72446 * 20 18 17 23 23 H 1.48501 * 109.46929 * 60.00254 * 22 20 18 24 24 H 1.48494 * 109.46945 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.46900 * 300.00320 * 22 20 18 26 26 H 1.08997 * 109.47211 * 60.00102 * 1 2 3 27 27 H 1.09003 * 109.46842 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47586 * 299.99741 * 1 2 3 29 29 H 1.08993 * 109.47586 * 240.00259 * 2 1 3 30 30 H 1.08997 * 109.47211 * 119.99898 * 2 1 3 31 31 H 1.09000 * 109.47136 * 299.99985 * 5 3 2 32 32 H 1.08997 * 109.46899 * 60.00518 * 5 3 2 33 33 H 1.08995 * 109.46893 * 179.97438 * 5 3 2 34 34 H 1.08997 * 109.46995 * 29.98844 * 7 6 3 35 35 H 1.08993 * 109.47694 * 149.99502 * 7 6 3 36 36 H 1.09002 * 109.47085 * 299.99589 * 8 7 6 37 37 H 1.09005 * 109.47569 * 59.99653 * 8 7 6 38 38 H 1.08999 * 109.47166 * 179.97438 * 8 7 6 39 39 H 1.08996 * 109.47177 * 300.00391 * 11 9 6 40 40 H 1.09006 * 109.47193 * 60.00039 * 11 9 6 41 41 H 1.08006 * 119.87253 * 359.97438 * 13 12 11 42 42 H 1.08001 * 119.75273 * 180.02562 * 14 13 12 43 43 H 1.08008 * 119.87145 * 180.02562 * 15 14 13 44 44 H 1.08000 * 120.12926 * 179.97438 * 16 15 14 45 45 H 0.96996 * 119.99922 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9815 0.8418 5 6 3.5648 1.4445 0.1258 6 7 1.6524 2.0976 -1.2518 7 6 2.1138 1.5590 -2.5337 8 6 3.4493 2.2055 -2.9073 9 6 0.8712 3.1955 -1.2241 10 8 0.4894 3.6415 -0.1628 11 6 0.4777 3.8729 -2.5114 12 6 -0.3897 5.0668 -2.2061 13 6 -1.7608 4.9496 -2.2326 14 6 -2.5610 6.0460 -1.9517 15 6 -1.9916 7.2717 -1.6416 16 6 -0.6233 7.4123 -1.6102 17 6 0.1990 6.3043 -1.8871 18 6 1.6064 6.4351 -1.8507 19 1 2.2238 5.5729 -1.6459 20 6 2.1995 7.6817 -2.0800 21 7 1.5068 8.6438 -2.6332 22 14 3.9803 7.9720 -1.5962 23 1 4.8535 7.0193 -2.3276 24 1 4.3665 9.3636 -1.9418 25 1 4.1361 7.7641 -0.1342 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5137 0.8899 29 1 1.8934 -0.5137 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.8531 0.9572 1.0572 32 1 3.9994 0.9056 -0.7160 33 1 3.9280 2.4721 0.1254 34 1 2.2436 0.4802 -2.4489 35 1 1.3762 1.7767 -3.3060 36 1 3.3195 3.2845 -2.9920 37 1 4.1871 1.9878 -2.1350 38 1 3.7929 1.8046 -3.8608 39 1 1.3738 4.2005 -3.0383 40 1 -0.0755 3.1718 -3.1366 41 1 -2.2150 3.9997 -2.4733 42 1 -3.6360 5.9449 -1.9744 43 1 -2.6247 8.1193 -1.4239 44 1 -0.1819 8.3680 -1.3689 45 1 1.9178 9.5080 -2.7919 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855146106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:37 Heat of formation + Delta-G solvation = -33.357491 kcal Electronic energy + Delta-G solvation = -24135.260976 eV Core-core repulsion = 20923.803099 eV Total energy + Delta-G solvation = -3211.457877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.78751 -37.58336 -36.22313 -33.68978 -33.56858 -31.45378 -30.07488 -29.71932 -29.36917 -26.71470 -24.97627 -23.67955 -23.14749 -21.26373 -20.85850 -19.55307 -18.37893 -17.09137 -16.85532 -15.83181 -15.29277 -15.08877 -14.48127 -14.00132 -13.84693 -13.63253 -13.47599 -13.35049 -13.22607 -12.86147 -12.66240 -12.49144 -12.24857 -11.92820 -11.64891 -11.62035 -11.51252 -11.16731 -11.13330 -11.02014 -10.89926 -10.86597 -10.64844 -10.59651 -10.49290 -10.36032 -9.42630 -9.30876 -9.11064 -8.99590 -8.26159 -7.25454 -7.23039 -6.68579 -4.28811 2.83958 3.01625 3.08228 3.11827 3.31951 3.39638 3.49715 3.97087 4.70529 4.76695 5.07377 5.08435 5.14071 5.32884 5.41125 5.48362 5.53087 5.61121 5.66610 5.78211 5.82771 5.89139 5.93278 5.98846 6.00090 6.06854 6.20126 6.26040 6.29328 6.33120 6.34959 6.43005 6.54336 6.56308 6.86171 7.02720 7.13911 7.35235 7.48023 7.69410 7.89320 7.99650 8.13343 8.18499 8.37295 8.70268 8.93736 8.97463 9.07410 10.25597 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.006497 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.650931 B = 4308.640211 C = 5659.824895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.134 3.866 4 H 0.099 0.901 5 C -0.162 4.162 6 N -0.618 5.618 7 C 0.108 3.892 8 C -0.181 4.181 9 C 0.519 3.481 10 O -0.521 6.521 11 C -0.069 4.069 12 C -0.179 4.179 13 C -0.082 4.082 14 C -0.239 4.239 15 C -0.108 4.108 16 C -0.159 4.159 17 C 0.129 3.871 18 C -0.455 4.455 19 H 0.073 0.927 20 C 0.078 3.922 21 N -0.796 5.796 22 Si 0.901 3.099 23 H -0.266 1.266 24 H -0.278 1.278 25 H -0.265 1.265 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.117 0.883 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.269 -13.710 -0.187 14.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C 0.030 3.970 4 H 0.117 0.883 5 C -0.220 4.220 6 N -0.354 5.354 7 C -0.015 4.015 8 C -0.240 4.240 9 C 0.308 3.692 10 O -0.395 6.395 11 C -0.109 4.109 12 C -0.181 4.181 13 C -0.101 4.101 14 C -0.259 4.259 15 C -0.126 4.126 16 C -0.178 4.178 17 C 0.127 3.873 18 C -0.485 4.485 19 H 0.091 0.909 20 C -0.140 4.140 21 N -0.422 5.422 22 Si 0.726 3.274 23 H -0.191 1.191 24 H -0.203 1.203 25 H -0.189 1.189 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.134 0.866 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.075 -13.197 0.304 13.815 hybrid contribution 0.896 0.195 0.102 0.923 sum 4.971 -13.002 0.406 13.926 Atomic orbital electron populations 1.21694 0.95463 1.00778 1.02570 1.21876 0.96643 0.96504 1.01842 1.20994 0.94431 0.92886 0.88686 0.88342 1.22259 0.95762 1.02473 1.01519 1.48128 1.52013 1.29321 1.05961 1.21418 0.96348 0.98076 0.85665 1.22432 0.97666 1.02548 1.01318 1.21197 0.76784 0.78714 0.92467 1.90657 1.53571 1.62747 1.32516 1.20315 1.00892 0.95698 0.93955 1.19096 0.92107 0.94561 1.12357 1.20288 0.93282 0.96226 1.00258 1.20293 0.96830 0.94285 1.14444 1.20666 0.95298 0.95705 1.00963 1.21287 0.91827 0.99862 1.04856 1.17326 0.93105 0.90058 0.86845 1.19421 0.91908 0.94507 1.42651 0.90903 1.25858 1.00000 0.95644 0.92460 1.69814 1.38200 1.03981 1.30209 0.86486 0.82594 0.77985 0.80375 1.19092 1.20348 1.18922 0.92589 0.93263 0.92631 0.91935 0.91419 0.92163 0.92226 0.92074 0.91006 0.90365 0.91527 0.91984 0.92091 0.88661 0.90930 0.89886 0.89741 0.89647 0.86567 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.80 37.16 0.36 -1.41 16 2 C -0.13 -1.42 5.36 -26.73 -0.14 -1.57 16 3 C 0.13 1.83 2.64 -67.93 -0.18 1.65 16 4 H 0.10 1.63 6.90 -51.93 -0.36 1.27 16 5 C -0.16 -1.90 8.14 37.16 0.30 -1.60 16 6 N -0.62 -9.38 1.85 -166.11 -0.31 -9.69 16 7 C 0.11 1.28 5.35 -4.04 -0.02 1.26 16 8 C -0.18 -2.12 9.96 37.16 0.37 -1.75 16 9 C 0.52 10.32 7.29 -10.98 -0.08 10.24 16 10 O -0.52 -12.66 15.36 5.56 0.09 -12.57 16 11 C -0.07 -1.39 3.74 -29.04 -0.11 -1.50 16 12 C -0.18 -4.40 4.43 -103.91 -0.46 -4.86 16 13 C -0.08 -1.94 9.66 -39.67 -0.38 -2.32 16 14 C -0.24 -5.68 10.05 -39.29 -0.39 -6.08 16 15 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 16 C -0.16 -4.32 8.69 -38.88 -0.34 -4.66 16 17 C 0.13 3.51 5.56 -106.82 -0.59 2.91 16 18 C -0.46 -12.14 8.14 -37.74 -0.31 -12.44 16 19 H 0.07 1.90 6.67 -52.48 -0.35 1.55 16 20 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 21 N -0.80 -20.80 10.96 55.55 0.61 -20.20 16 22 Si 0.90 19.16 29.59 -169.99 -5.03 14.13 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 26 H 0.05 0.76 7.75 -51.93 -0.40 0.36 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.61 6.47 -51.93 -0.34 0.27 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.61 6.17 -51.93 -0.32 0.29 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.69 6.34 -51.93 -0.33 0.36 16 35 H 0.08 0.89 6.44 -51.93 -0.33 0.56 16 36 H 0.07 0.95 7.20 -51.93 -0.37 0.58 16 37 H 0.06 0.70 5.44 -51.93 -0.28 0.42 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 1.91 6.11 -51.93 -0.32 1.59 16 40 H 0.07 1.24 7.30 -51.93 -0.38 0.86 16 41 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 42 H 0.08 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 44 H 0.12 3.24 6.20 -52.49 -0.33 2.92 16 45 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 LS Contribution 353.40 15.07 5.33 5.33 Total: -1.00 -30.37 353.40 -8.83 -39.20 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.05 Total: 7.13 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -2.46 Total: -23.33 kcal Atomic # 7 Polarization: -30.18 SS G_CDS: 0.30 Total: -29.88 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.09 Total: -12.57 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.37 -8.83 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855146106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.840 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds