Wall clock time and date at job start Tue Mar 31 2020 06:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46870 * 2 1 4 4 H 1.09001 * 109.47130 * 304.99961 * 3 2 1 5 5 C 1.53001 * 109.47323 * 184.99864 * 3 2 1 6 6 N 1.46503 * 109.47438 * 64.99421 * 3 2 1 7 7 C 1.46508 * 119.99482 * 60.00371 * 6 3 2 8 8 C 1.53005 * 109.46788 * 269.99861 * 7 6 3 9 9 C 1.34776 * 120.00283 * 240.00036 * 6 3 2 10 10 O 1.21278 * 119.99901 * 0.02562 * 9 6 3 11 11 C 1.50696 * 119.99647 * 179.97438 * 9 6 3 12 12 C 1.50703 * 109.46939 * 180.02562 * 11 9 6 13 13 C 1.37638 * 120.12672 * 265.00093 * 12 11 9 14 14 C 1.38617 * 120.24423 * 180.29998 * 13 12 11 15 15 C 1.38650 * 120.50193 * 359.43928 * 14 13 12 16 16 C 1.37599 * 120.24814 * 0.56408 * 15 14 13 17 17 C 1.40702 * 120.12765 * 85.02573 * 12 11 9 18 18 C 1.41394 * 120.24228 * 359.95408 * 17 12 11 19 19 H 1.08003 * 120.00120 * 334.07996 * 18 17 12 20 20 C 1.39940 * 120.00046 * 154.08252 * 18 17 12 21 21 N 1.30822 * 119.99912 * 343.62625 * 20 18 17 22 22 Si 1.86803 * 120.00192 * 163.63728 * 20 18 17 23 23 H 1.48494 * 109.47516 * 89.99468 * 22 20 18 24 24 H 1.48504 * 109.46852 * 209.99866 * 22 20 18 25 25 H 1.48504 * 109.47021 * 329.99095 * 22 20 18 26 26 H 1.08999 * 109.46964 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47564 * 299.99893 * 1 2 3 28 28 H 1.09001 * 109.46826 * 60.00238 * 1 2 3 29 29 H 1.08993 * 109.47063 * 239.99861 * 2 1 3 30 30 H 1.08998 * 109.46892 * 119.99247 * 2 1 3 31 31 H 1.09005 * 109.46944 * 59.99643 * 5 3 2 32 32 H 1.08997 * 109.47305 * 180.02562 * 5 3 2 33 33 H 1.08995 * 109.46680 * 300.00197 * 5 3 2 34 34 H 1.09001 * 109.47321 * 29.99772 * 7 6 3 35 35 H 1.08998 * 109.46944 * 150.00072 * 7 6 3 36 36 H 1.09001 * 109.47117 * 300.00036 * 8 7 6 37 37 H 1.08998 * 109.47206 * 60.00371 * 8 7 6 38 38 H 1.08995 * 109.46615 * 180.02562 * 8 7 6 39 39 H 1.09004 * 109.47301 * 60.00543 * 11 9 6 40 40 H 1.09003 * 109.47329 * 300.00171 * 11 9 6 41 41 H 1.08000 * 119.87791 * 0.02562 * 13 12 11 42 42 H 1.08003 * 119.74306 * 179.70792 * 14 13 12 43 43 H 1.07998 * 119.87779 * 180.30499 * 15 14 13 44 44 H 1.08008 * 120.12449 * 179.74582 * 16 15 14 45 45 H 0.97001 * 120.00439 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4445 -0.1257 6 7 1.6523 2.0976 1.2518 7 6 2.1138 1.5591 2.5337 8 6 1.0996 0.5377 3.0526 9 6 0.8712 3.1956 1.2240 10 8 0.4888 3.6411 0.1628 11 6 0.4720 3.8690 2.5117 12 6 -0.3951 5.0631 2.2062 13 6 0.1649 6.3166 2.1083 14 6 -0.6313 7.4175 1.8336 15 6 -1.9965 7.2687 1.6431 16 6 -2.5779 6.0250 1.7365 17 6 -1.7804 4.9010 2.0207 18 6 -2.3667 3.6180 2.1185 19 1 -1.7748 2.7371 1.9181 20 6 -3.7138 3.4897 2.4749 21 7 -4.3443 4.4966 3.0227 22 14 -4.6117 1.8805 2.1689 23 1 -4.4706 1.0011 3.3571 24 1 -6.0505 2.1552 1.9245 25 1 -4.0280 1.2059 0.9817 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 3.8532 0.9571 -1.0571 32 1 3.9281 2.4721 -0.1252 33 1 3.9994 0.9054 0.7161 34 1 3.0805 1.0743 2.3973 35 1 2.2129 2.3709 3.2542 36 1 0.1330 1.0225 3.1890 37 1 1.0005 -0.2742 2.3321 38 1 1.4428 0.1374 4.0065 39 1 1.3659 4.1952 3.0434 40 1 -0.0838 3.1660 3.1323 41 1 1.2280 6.4435 2.2503 42 1 -0.1840 8.3980 1.7632 43 1 -2.6066 8.1326 1.4247 44 1 -3.6423 5.9120 1.5917 45 1 -5.2782 4.4079 3.2694 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855146107.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:39 Heat of formation + Delta-G solvation = -47.626733 kcal Electronic energy + Delta-G solvation = -24303.227255 eV Core-core repulsion = 21091.150617 eV Total energy + Delta-G solvation = -3212.076638 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.20769 -39.35453 -37.71444 -35.50475 -34.67718 -33.09045 -31.81911 -31.34462 -30.26391 -28.41315 -26.87233 -24.73857 -24.16248 -22.85762 -22.60627 -21.13148 -19.71470 -19.03283 -18.23956 -17.39983 -16.86227 -16.43029 -16.21303 -15.50257 -15.44053 -14.94509 -14.68618 -14.56699 -14.46666 -14.39191 -14.36395 -13.58191 -13.45974 -13.38406 -13.20702 -12.90108 -12.81993 -12.76580 -12.67085 -12.52731 -12.41630 -12.15667 -12.08012 -11.93568 -11.68924 -11.45618 -11.30746 -11.18995 -11.02825 -10.57370 -9.50876 -9.22737 -9.15265 -8.60324 -6.28863 0.98965 1.13018 1.32117 1.43389 1.50986 1.87685 2.17759 2.22890 2.77662 3.65706 3.82654 4.10281 4.12100 4.14551 4.23126 4.33644 4.39112 4.47869 4.51426 4.56499 4.64391 4.67046 4.70564 4.75157 4.78810 4.89378 4.92381 5.01379 5.03824 5.08670 5.10823 5.19077 5.28430 5.32903 5.33811 5.38149 5.54814 5.57610 5.77246 5.87815 6.04021 6.16992 6.21183 6.42280 6.57697 6.74107 6.99548 7.11340 7.46948 8.36359 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013315 B = 0.006978 C = 0.005204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.349567 B = 4011.714242 C = 5379.169331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C 0.126 3.874 4 H 0.060 0.940 5 C -0.149 4.149 6 N -0.607 5.607 7 C 0.100 3.900 8 C -0.180 4.180 9 C 0.518 3.482 10 O -0.579 6.579 11 C -0.066 4.066 12 C -0.186 4.186 13 C -0.094 4.094 14 C -0.241 4.241 15 C -0.118 4.118 16 C -0.193 4.193 17 C 0.095 3.905 18 C -0.477 4.477 19 H 0.067 0.933 20 C 0.038 3.962 21 N -0.826 5.826 22 Si 0.964 3.036 23 H -0.253 1.253 24 H -0.267 1.267 25 H -0.268 1.268 26 H 0.068 0.932 27 H 0.036 0.964 28 H 0.029 0.971 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.088 0.912 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.096 0.904 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.048 -11.274 0.589 17.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C 0.023 3.977 4 H 0.078 0.922 5 C -0.207 4.207 6 N -0.340 5.340 7 C -0.022 4.022 8 C -0.238 4.238 9 C 0.308 3.692 10 O -0.458 6.458 11 C -0.105 4.105 12 C -0.188 4.188 13 C -0.112 4.112 14 C -0.261 4.261 15 C -0.136 4.136 16 C -0.213 4.213 17 C 0.093 3.907 18 C -0.507 4.507 19 H 0.085 0.915 20 C -0.176 4.176 21 N -0.453 5.453 22 Si 0.785 3.215 23 H -0.177 1.177 24 H -0.191 1.191 25 H -0.193 1.193 26 H 0.087 0.913 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.099 0.901 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.124 0.876 40 H 0.110 0.890 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.123 0.877 44 H 0.114 0.886 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.630 -10.979 0.145 16.735 hybrid contribution -1.180 -0.098 -0.248 1.209 sum 11.450 -11.076 -0.104 15.931 Atomic orbital electron populations 1.21790 0.97374 1.01332 1.00607 1.21945 0.94749 0.95243 1.04078 1.21178 0.96309 0.93626 0.86621 0.92209 1.22054 0.92863 1.02043 1.03737 1.48140 1.50471 1.27368 1.08055 1.21770 0.98730 0.98003 0.83681 1.22468 0.99116 0.99677 1.02572 1.21070 0.76748 0.80155 0.91265 1.90632 1.55373 1.65660 1.34120 1.20295 0.99350 0.96092 0.94766 1.19587 0.94056 0.93856 1.11314 1.20727 0.98271 0.92646 0.99533 1.20704 0.93743 0.98125 1.13485 1.20939 0.95420 0.96446 1.00794 1.21287 0.99352 0.93335 1.07290 1.17728 0.91517 0.93537 0.87890 1.19538 0.95577 0.93140 1.42450 0.91452 1.26613 0.98049 1.01226 0.91754 1.69877 1.12079 1.33727 1.29574 0.85479 0.77776 0.78408 0.79832 1.17749 1.19135 1.19282 0.91341 0.94488 0.95196 0.89280 0.89156 0.90054 0.93649 0.90083 0.87363 0.89711 0.94778 0.91245 0.89359 0.87618 0.88977 0.86745 0.86675 0.87670 0.88589 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 9.15 71.98 0.66 -3.68 16 2 C -0.12 -2.60 4.88 30.60 0.15 -2.45 16 3 C 0.13 3.28 2.64 44.99 0.12 3.40 16 4 H 0.06 2.05 6.90 -2.39 -0.02 2.03 16 5 C -0.15 -2.74 9.17 71.98 0.66 -2.08 16 6 N -0.61 -17.72 1.85 -797.80 -1.48 -19.20 16 7 C 0.10 2.05 5.33 86.38 0.46 2.51 16 8 C -0.18 -3.76 8.99 71.98 0.65 -3.11 16 9 C 0.52 20.87 7.31 87.66 0.64 21.51 16 10 O -0.58 -29.39 15.36 -3.02 -0.05 -29.44 16 11 C -0.07 -2.64 3.74 29.10 0.11 -2.53 16 12 C -0.19 -9.30 4.43 -19.40 -0.09 -9.38 16 13 C -0.09 -4.37 9.66 22.22 0.21 -4.16 16 14 C -0.24 -11.33 10.05 22.46 0.23 -11.11 16 15 C -0.12 -5.97 10.02 22.22 0.22 -5.75 16 16 C -0.19 -10.99 8.68 22.73 0.20 -10.79 16 17 C 0.10 5.40 5.56 -21.29 -0.12 5.28 16 18 C -0.48 -26.51 8.14 23.46 0.19 -26.32 16 19 H 0.07 3.69 6.68 -2.91 -0.02 3.67 16 20 C 0.04 1.99 5.16 85.26 0.44 2.43 16 21 N -0.83 -44.77 10.97 21.82 0.24 -44.53 16 22 Si 0.96 40.16 29.59 68.60 2.03 42.19 16 23 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 24 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.04 1.23 6.45 -2.39 -0.02 1.21 16 28 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.53 5.72 -2.39 -0.01 1.52 16 31 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.08 1.10 6.66 -2.39 -0.02 1.08 16 34 H 0.11 1.50 6.43 -2.39 -0.02 1.48 16 35 H 0.08 1.66 6.44 -2.39 -0.02 1.65 16 36 H 0.03 0.94 7.22 -2.39 -0.02 0.92 16 37 H 0.07 1.38 4.56 -2.39 -0.01 1.37 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.11 3.44 7.31 -2.39 -0.02 3.42 16 40 H 0.09 3.74 6.10 -2.39 -0.01 3.73 16 41 H 0.11 4.53 8.06 -2.91 -0.02 4.50 16 42 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 43 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 44 H 0.10 5.70 6.22 -2.91 -0.02 5.68 16 45 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 Total: -1.00 -71.00 350.02 6.45 -64.55 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.97 Total: 32.65 kcal Atomic # 6 Polarization: -50.95 SS G_CDS: 4.73 Total: -46.22 kcal Atomic # 7 Polarization: -62.49 SS G_CDS: -1.24 Total: -63.72 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -0.05 Total: -29.44 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -71.00 6.45 -64.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855146107.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.922 kcal (2) G-P(sol) polarization free energy of solvation -71.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds