Wall clock time and date at job start Tue Mar 31 2020 05:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47021 * 2 1 4 4 H 1.09001 * 109.47332 * 305.00441 * 3 2 1 5 5 C 1.52998 * 109.47309 * 65.00422 * 3 2 1 6 6 C 1.53003 * 109.47205 * 185.00655 * 3 2 1 7 7 C 1.52998 * 109.47280 * 175.00194 * 6 3 2 8 8 N 1.46501 * 109.47088 * 179.97438 * 7 6 3 9 9 C 1.34770 * 120.00103 * 180.02562 * 8 7 6 10 10 O 1.21288 * 119.99969 * 359.97438 * 9 8 7 11 11 C 1.50702 * 120.00293 * 179.97438 * 9 8 7 12 12 C 1.50701 * 109.47133 * 179.97438 * 11 9 8 13 13 C 1.37640 * 120.12691 * 264.99551 * 12 11 9 14 14 C 1.38615 * 120.24654 * 179.97438 * 13 12 11 15 15 C 1.38663 * 120.49836 * 0.02562 * 14 13 12 16 16 C 1.37597 * 120.24886 * 0.02562 * 15 14 13 17 17 C 1.40695 * 120.12745 * 84.73182 * 12 11 9 18 18 C 1.41403 * 120.24334 * 359.97438 * 17 12 11 19 19 H 1.08001 * 119.99672 * 333.90270 * 18 17 12 20 20 C 1.39937 * 120.00185 * 153.90622 * 18 17 12 21 21 N 1.30831 * 119.99942 * 343.70464 * 20 18 17 22 22 Si 1.86798 * 120.00254 * 163.70687 * 20 18 17 23 23 H 1.48498 * 109.47201 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47308 * 119.99777 * 22 20 18 25 25 H 1.48504 * 109.47131 * 239.99741 * 22 20 18 26 26 H 1.08998 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46776 * 299.99712 * 1 2 3 28 28 H 1.09000 * 109.47656 * 59.99410 * 1 2 3 29 29 H 1.09003 * 109.46776 * 240.00288 * 2 1 3 30 30 H 1.08997 * 109.47496 * 120.00083 * 2 1 3 31 31 H 1.09001 * 109.46908 * 59.99760 * 5 3 2 32 32 H 1.08996 * 109.47414 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47190 * 300.00150 * 5 3 2 34 34 H 1.09004 * 109.47429 * 54.99617 * 6 3 2 35 35 H 1.09003 * 109.46642 * 295.00209 * 6 3 2 36 36 H 1.09001 * 109.46971 * 299.99203 * 7 6 3 37 37 H 1.08995 * 109.47136 * 59.99611 * 7 6 3 38 38 H 0.97006 * 119.99715 * 359.97438 * 8 7 6 39 39 H 1.08994 * 109.46978 * 300.00272 * 11 9 8 40 40 H 1.09009 * 109.47043 * 59.99983 * 11 9 8 41 41 H 1.07996 * 119.87773 * 0.02562 * 13 12 11 42 42 H 1.08000 * 119.74958 * 180.02562 * 14 13 12 43 43 H 1.08005 * 119.86954 * 179.97438 * 15 14 13 44 44 H 1.08002 * 120.12119 * 179.97438 * 16 15 14 45 45 H 0.96997 * 119.99932 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4444 -0.1259 7 6 4.0644 2.8850 -0.2512 8 7 5.5245 2.8868 -0.3712 9 6 6.1892 4.0528 -0.4935 10 8 5.5785 5.1007 -0.5047 11 6 7.6912 4.0548 -0.6162 12 6 8.1833 5.4738 -0.7398 13 6 8.4103 6.0205 -1.9824 14 6 8.8624 7.3257 -2.0990 15 6 9.0916 8.0947 -0.9681 16 6 8.8724 7.5683 0.2841 17 6 8.4071 6.2466 0.4143 18 6 8.1715 5.6976 1.6959 19 1 7.4564 4.8974 1.8174 20 6 8.8648 6.1910 2.8068 21 7 9.9398 6.9173 2.6374 22 14 8.2557 5.8126 4.5317 23 1 7.0293 4.9791 4.4518 24 1 9.3074 5.0762 5.2777 25 1 7.9456 7.0823 5.2368 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.0700 1.5874 2.1491 32 1 1.9990 3.1540 1.3076 33 1 0.5490 2.1252 1.3970 34 1 3.8570 0.8801 -1.0115 35 1 4.0029 0.9836 0.7595 36 1 3.6263 3.3458 -1.1366 37 1 3.7722 3.4493 0.6343 38 1 6.0129 2.0488 -0.3618 39 1 8.1287 3.5939 0.2693 40 1 7.9841 3.4906 -1.5018 41 1 8.2347 5.4307 -2.8699 42 1 9.0375 7.7467 -3.0780 43 1 9.4443 9.1104 -1.0708 44 1 9.0520 8.1690 1.1636 45 1 10.4205 7.2590 3.4074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855390950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:22 Heat of formation + Delta-G solvation = -54.342981 kcal Electronic energy + Delta-G solvation = -22598.513998 eV Core-core repulsion = 19386.146122 eV Total energy + Delta-G solvation = -3212.367876 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.22383 -37.70142 -37.06226 -34.25979 -33.56952 -31.78618 -30.92798 -29.40239 -28.25630 -26.69932 -25.26797 -24.65502 -22.03540 -20.88511 -20.60169 -20.02033 -19.14157 -17.12844 -16.26873 -15.87965 -15.70385 -15.29358 -14.97663 -14.51631 -14.27472 -13.98189 -13.67142 -13.46910 -13.15837 -12.93276 -12.66612 -12.53956 -12.15480 -11.92328 -11.79448 -11.67946 -11.52239 -11.29054 -11.10567 -10.94595 -10.93539 -10.84301 -10.71692 -10.64181 -10.57667 -10.34422 -9.43287 -9.32011 -9.12758 -9.07043 -8.60825 -7.25817 -7.23708 -6.68902 -4.29194 2.81983 3.02477 3.10165 3.15662 3.30640 3.43035 3.73727 3.97573 4.54863 4.64480 4.70249 4.73386 5.03548 5.12009 5.28917 5.36816 5.39721 5.50895 5.56294 5.62185 5.75261 5.81059 5.83360 5.85990 5.92222 5.96570 6.03193 6.10296 6.19764 6.27338 6.28984 6.34054 6.48864 6.56168 6.85095 6.89143 7.13842 7.34939 7.47625 7.69727 7.95256 8.03394 8.13897 8.18259 8.36929 8.70336 8.95163 8.97318 9.06953 10.25326 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.003885 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.500505 B = 7205.760761 C = 8582.427299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.089 4.089 4 H 0.072 0.928 5 C -0.154 4.154 6 C -0.126 4.126 7 C 0.119 3.881 8 N -0.747 5.747 9 C 0.513 3.487 10 O -0.522 6.522 11 C -0.071 4.071 12 C -0.179 4.179 13 C -0.082 4.082 14 C -0.240 4.240 15 C -0.108 4.108 16 C -0.159 4.159 17 C 0.128 3.872 18 C -0.455 4.455 19 H 0.074 0.926 20 C 0.076 3.924 21 N -0.796 5.796 22 Si 0.902 3.098 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.272 1.272 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.395 0.605 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.117 0.883 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.244 -13.007 -2.261 17.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.108 4.108 4 H 0.090 0.910 5 C -0.211 4.211 6 C -0.164 4.164 7 C -0.005 4.005 8 N -0.401 5.401 9 C 0.300 3.700 10 O -0.396 6.396 11 C -0.111 4.111 12 C -0.181 4.181 13 C -0.100 4.100 14 C -0.259 4.259 15 C -0.126 4.126 16 C -0.179 4.179 17 C 0.126 3.874 18 C -0.485 4.485 19 H 0.092 0.908 20 C -0.141 4.141 21 N -0.422 5.422 22 Si 0.727 3.273 23 H -0.186 1.186 24 H -0.201 1.201 25 H -0.197 1.197 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.228 0.772 39 H 0.114 0.886 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.135 0.865 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.509 -12.093 -2.127 16.829 hybrid contribution 0.024 -0.508 0.831 0.974 sum -11.485 -12.601 -1.296 17.098 Atomic orbital electron populations 1.21826 0.95967 1.01381 1.01991 1.21569 0.95861 0.96280 1.01930 1.21093 0.94604 0.96233 0.98863 0.90953 1.21970 1.01193 1.01074 0.96881 1.21853 0.95682 0.96422 1.02431 1.21295 0.80990 0.96345 1.01867 1.46152 1.07045 1.09255 1.77681 1.21226 0.90865 0.82853 0.75014 1.90677 1.69833 1.31371 1.47716 1.20269 0.90159 0.97943 1.02722 1.19071 1.11843 0.93724 0.93499 1.20301 0.99607 0.94995 0.95136 1.20308 1.13311 0.95907 0.96373 1.20676 1.00774 0.97575 0.93597 1.21294 1.05090 0.95820 0.95663 1.17347 0.87808 0.90576 0.91704 1.19501 1.20337 1.17355 0.91333 0.90764 1.25878 0.93433 0.93407 1.01364 1.69834 1.12505 1.27098 1.32769 0.86357 0.79855 0.79244 0.81836 1.18551 1.20053 1.19736 0.93001 0.92441 0.92783 0.92071 0.92000 0.92666 0.92048 0.92561 0.91468 0.91317 0.92207 0.91666 0.77219 0.88634 0.90694 0.89785 0.89687 0.89604 0.86527 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.67 37.16 0.36 -0.71 16 2 C -0.12 -0.89 5.40 -26.73 -0.14 -1.03 16 3 C -0.09 -0.78 2.39 -90.62 -0.22 -0.99 16 4 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.15 -1.42 8.70 37.16 0.32 -1.10 16 6 C -0.13 -1.20 4.80 -26.73 -0.13 -1.33 16 7 C 0.12 1.59 5.43 -4.04 -0.02 1.57 16 8 N -0.75 -11.11 5.56 -60.29 -0.33 -11.45 16 9 C 0.51 10.27 7.44 -10.99 -0.08 10.19 16 10 O -0.52 -12.90 16.03 5.55 0.09 -12.81 16 11 C -0.07 -1.42 5.18 -29.03 -0.15 -1.57 16 12 C -0.18 -4.42 4.43 -103.91 -0.46 -4.88 16 13 C -0.08 -1.94 9.66 -39.66 -0.38 -2.33 16 14 C -0.24 -5.71 10.05 -39.29 -0.39 -6.11 16 15 C -0.11 -2.69 10.02 -39.66 -0.40 -3.09 16 16 C -0.16 -4.35 8.69 -38.88 -0.34 -4.69 16 17 C 0.13 3.50 5.56 -106.83 -0.59 2.90 16 18 C -0.46 -12.21 8.14 -37.74 -0.31 -12.51 16 19 H 0.07 1.95 6.67 -52.49 -0.35 1.60 16 20 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 21 N -0.80 -20.85 10.96 55.55 0.61 -20.24 16 22 Si 0.90 19.16 29.59 -169.99 -5.03 14.13 16 23 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.06 0.40 6.57 -51.93 -0.34 0.06 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 33 H 0.06 0.46 6.56 -51.93 -0.34 0.12 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.98 6.56 -51.93 -0.34 0.64 16 38 H 0.39 4.56 8.47 -40.82 -0.35 4.22 16 39 H 0.10 1.87 7.08 -51.93 -0.37 1.50 16 40 H 0.07 1.25 8.05 -51.92 -0.42 0.83 16 41 H 0.08 1.75 8.06 -52.49 -0.42 1.32 16 42 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 44 H 0.12 3.26 6.21 -52.49 -0.33 2.94 16 45 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 LS Contribution 362.67 15.07 5.47 5.47 Total: -1.00 -31.20 362.67 -9.61 -40.80 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -7.38 Total: 7.94 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: -3.02 Total: -23.83 kcal Atomic # 7 Polarization: -31.96 SS G_CDS: 0.27 Total: -31.69 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.09 Total: -12.81 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.20 -9.61 -40.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855390950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.540 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds