Wall clock time and date at job start Tue Mar 31 2020 05:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47021 * 2 1 4 4 H 1.09001 * 109.47332 * 305.00441 * 3 2 1 5 5 C 1.52998 * 109.47309 * 65.00422 * 3 2 1 6 6 C 1.53003 * 109.47205 * 185.00655 * 3 2 1 7 7 C 1.52998 * 109.47280 * 175.00194 * 6 3 2 8 8 N 1.46501 * 109.47088 * 179.97438 * 7 6 3 9 9 C 1.34770 * 120.00103 * 180.02562 * 8 7 6 10 10 O 1.21288 * 119.99969 * 359.97438 * 9 8 7 11 11 C 1.50702 * 120.00293 * 179.97438 * 9 8 7 12 12 C 1.50701 * 109.47133 * 179.97438 * 11 9 8 13 13 C 1.37640 * 120.12691 * 264.99551 * 12 11 9 14 14 C 1.38615 * 120.24654 * 179.97438 * 13 12 11 15 15 C 1.38663 * 120.49836 * 0.02562 * 14 13 12 16 16 C 1.37597 * 120.24886 * 0.02562 * 15 14 13 17 17 C 1.40695 * 120.12745 * 84.73182 * 12 11 9 18 18 C 1.41403 * 120.24334 * 359.97438 * 17 12 11 19 19 H 1.08001 * 119.99672 * 333.90270 * 18 17 12 20 20 C 1.39937 * 120.00185 * 153.90622 * 18 17 12 21 21 N 1.30831 * 119.99942 * 343.70464 * 20 18 17 22 22 Si 1.86798 * 120.00254 * 163.70687 * 20 18 17 23 23 H 1.48498 * 109.47201 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47308 * 119.99777 * 22 20 18 25 25 H 1.48504 * 109.47131 * 239.99741 * 22 20 18 26 26 H 1.08998 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46776 * 299.99712 * 1 2 3 28 28 H 1.09000 * 109.47656 * 59.99410 * 1 2 3 29 29 H 1.09003 * 109.46776 * 240.00288 * 2 1 3 30 30 H 1.08997 * 109.47496 * 120.00083 * 2 1 3 31 31 H 1.09001 * 109.46908 * 59.99760 * 5 3 2 32 32 H 1.08996 * 109.47414 * 179.97438 * 5 3 2 33 33 H 1.08997 * 109.47190 * 300.00150 * 5 3 2 34 34 H 1.09004 * 109.47429 * 54.99617 * 6 3 2 35 35 H 1.09003 * 109.46642 * 295.00209 * 6 3 2 36 36 H 1.09001 * 109.46971 * 299.99203 * 7 6 3 37 37 H 1.08995 * 109.47136 * 59.99611 * 7 6 3 38 38 H 0.97006 * 119.99715 * 359.97438 * 8 7 6 39 39 H 1.08994 * 109.46978 * 300.00272 * 11 9 8 40 40 H 1.09009 * 109.47043 * 59.99983 * 11 9 8 41 41 H 1.07996 * 119.87773 * 0.02562 * 13 12 11 42 42 H 1.08000 * 119.74958 * 180.02562 * 14 13 12 43 43 H 1.08005 * 119.86954 * 179.97438 * 15 14 13 44 44 H 1.08002 * 120.12119 * 179.97438 * 16 15 14 45 45 H 0.96997 * 119.99932 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5648 1.4444 -0.1259 7 6 4.0644 2.8850 -0.2512 8 7 5.5245 2.8868 -0.3712 9 6 6.1892 4.0528 -0.4935 10 8 5.5785 5.1007 -0.5047 11 6 7.6912 4.0548 -0.6162 12 6 8.1833 5.4738 -0.7398 13 6 8.4103 6.0205 -1.9824 14 6 8.8624 7.3257 -2.0990 15 6 9.0916 8.0947 -0.9681 16 6 8.8724 7.5683 0.2841 17 6 8.4071 6.2466 0.4143 18 6 8.1715 5.6976 1.6959 19 1 7.4564 4.8974 1.8174 20 6 8.8648 6.1910 2.8068 21 7 9.9398 6.9173 2.6374 22 14 8.2557 5.8126 4.5317 23 1 7.0293 4.9791 4.4518 24 1 9.3074 5.0762 5.2777 25 1 7.9456 7.0823 5.2368 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 2.0700 1.5874 2.1491 32 1 1.9990 3.1540 1.3076 33 1 0.5490 2.1252 1.3970 34 1 3.8570 0.8801 -1.0115 35 1 4.0029 0.9836 0.7595 36 1 3.6263 3.3458 -1.1366 37 1 3.7722 3.4493 0.6343 38 1 6.0129 2.0488 -0.3618 39 1 8.1287 3.5939 0.2693 40 1 7.9841 3.4906 -1.5018 41 1 8.2347 5.4307 -2.8699 42 1 9.0375 7.7467 -3.0780 43 1 9.4443 9.1104 -1.0708 44 1 9.0520 8.1690 1.1636 45 1 10.4205 7.2590 3.4074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855390950.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:21 Heat of formation + Delta-G solvation = -71.523765 kcal Electronic energy + Delta-G solvation = -22599.259013 eV Core-core repulsion = 19386.146122 eV Total energy + Delta-G solvation = -3213.112891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77481 -39.20611 -38.23447 -35.52652 -35.48082 -33.47751 -31.89405 -31.32812 -29.33591 -28.15978 -26.90708 -25.81023 -22.96800 -22.80073 -22.09740 -21.14109 -20.52341 -19.06650 -17.75008 -17.37337 -16.97675 -16.67531 -16.20175 -16.03113 -15.57550 -15.34218 -15.04322 -14.68652 -14.48483 -14.36870 -14.19689 -13.62669 -13.46793 -13.36766 -12.91204 -12.84211 -12.80583 -12.74414 -12.60965 -12.51540 -12.48203 -12.11464 -11.95637 -11.59392 -11.39749 -11.33275 -11.31484 -11.20241 -11.02960 -10.70438 -9.96344 -9.22234 -9.15562 -8.59223 -6.29039 0.99205 1.13673 1.35264 1.48665 1.51976 1.86388 2.19851 2.42012 2.78969 3.76495 3.79243 3.93485 4.01546 4.17311 4.27978 4.37340 4.42124 4.50260 4.57705 4.61917 4.63550 4.70367 4.72102 4.76203 4.82073 4.88906 5.02136 5.09001 5.10737 5.17443 5.20750 5.21915 5.25211 5.30514 5.37352 5.53666 5.55518 5.56056 5.62494 5.78351 6.04424 6.17619 6.21719 6.42645 6.69854 6.77177 6.99908 7.11862 7.48491 8.37484 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.003885 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.500505 B = 7205.760761 C = 8582.427299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.087 4.087 4 H 0.069 0.931 5 C -0.154 4.154 6 C -0.114 4.114 7 C 0.118 3.882 8 N -0.725 5.725 9 C 0.513 3.487 10 O -0.578 6.578 11 C -0.070 4.070 12 C -0.188 4.188 13 C -0.093 4.093 14 C -0.243 4.243 15 C -0.118 4.118 16 C -0.195 4.195 17 C 0.094 3.906 18 C -0.482 4.482 19 H 0.070 0.930 20 C 0.035 3.965 21 N -0.827 5.827 22 Si 0.972 3.028 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.270 1.270 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.414 0.586 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.097 0.903 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.876 -15.415 -2.762 19.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.106 4.106 4 H 0.087 0.913 5 C -0.212 4.212 6 C -0.152 4.152 7 C -0.005 4.005 8 N -0.379 5.379 9 C 0.301 3.699 10 O -0.457 6.457 11 C -0.109 4.109 12 C -0.189 4.189 13 C -0.111 4.111 14 C -0.262 4.262 15 C -0.136 4.136 16 C -0.214 4.214 17 C 0.092 3.908 18 C -0.512 4.512 19 H 0.088 0.912 20 C -0.179 4.179 21 N -0.453 5.453 22 Si 0.793 3.207 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.194 1.194 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.251 0.749 39 H 0.115 0.885 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.134 0.866 43 H 0.123 0.877 44 H 0.115 0.885 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.131 -14.562 -2.639 19.136 hybrid contribution 0.209 0.240 0.875 0.931 sum -11.922 -14.323 -1.764 18.719 Atomic orbital electron populations 1.21832 0.95624 1.01916 1.01878 1.21532 0.96148 0.95053 1.02487 1.21084 0.93983 0.97243 0.98304 0.91291 1.21970 1.01792 0.99965 0.97430 1.21793 0.96120 0.93603 1.03651 1.21396 0.79748 0.98864 1.00528 1.45936 1.07868 1.08696 1.75386 1.21181 0.90874 0.83288 0.74538 1.90658 1.70755 1.33567 1.50716 1.20290 0.90226 0.95804 1.04608 1.19577 1.10486 0.95721 0.93148 1.20752 0.98838 0.95426 0.96050 1.20732 1.12090 0.96092 0.97276 1.20955 1.00583 0.98786 0.93309 1.21310 1.07649 0.96391 0.96053 1.17759 0.88804 0.91100 0.93154 1.19632 1.21087 1.18219 0.92223 0.91178 1.26674 0.93178 0.93038 1.05021 1.69890 1.13374 1.27851 1.34216 0.85313 0.79388 0.79088 0.76868 1.18721 1.18334 1.19447 0.92159 0.92638 0.92866 0.91275 0.91650 0.92451 0.94027 0.91686 0.89661 0.90506 0.93132 0.93670 0.74901 0.88470 0.86822 0.86485 0.86631 0.87657 0.88526 0.90380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.67 71.98 0.70 -1.13 16 2 C -0.11 -1.43 5.40 30.59 0.17 -1.26 16 3 C -0.09 -1.37 2.39 -10.79 -0.03 -1.39 16 4 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 5 C -0.15 -2.71 8.70 71.98 0.63 -2.09 16 6 C -0.11 -1.91 4.80 30.59 0.15 -1.76 16 7 C 0.12 3.06 5.43 86.38 0.47 3.53 16 8 N -0.72 -20.43 5.56 -463.06 -2.57 -23.00 16 9 C 0.51 20.23 7.44 87.66 0.65 20.88 16 10 O -0.58 -29.06 16.03 -3.05 -0.05 -29.11 16 11 C -0.07 -2.70 5.18 29.10 0.15 -2.55 16 12 C -0.19 -9.22 4.43 -19.41 -0.09 -9.30 16 13 C -0.09 -4.26 9.66 22.22 0.21 -4.04 16 14 C -0.24 -11.30 10.05 22.46 0.23 -11.07 16 15 C -0.12 -5.95 10.02 22.22 0.22 -5.73 16 16 C -0.19 -11.01 8.69 22.73 0.20 -10.82 16 17 C 0.09 5.28 5.56 -21.29 -0.12 5.16 16 18 C -0.48 -26.56 8.14 23.46 0.19 -26.37 16 19 H 0.07 3.78 6.67 -2.91 -0.02 3.76 16 20 C 0.04 1.83 5.16 85.25 0.44 2.27 16 21 N -0.83 -44.54 10.96 21.83 0.24 -44.30 16 22 Si 0.97 39.80 29.59 68.60 2.03 41.83 16 23 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 24 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 25 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.05 0.67 6.57 -2.39 -0.02 0.65 16 28 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 0.89 6.56 -2.39 -0.02 0.87 16 33 H 0.06 1.01 6.56 -2.39 -0.02 0.99 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.04 1.37 6.56 -2.39 -0.02 1.36 16 38 H 0.41 8.42 8.47 -92.70 -0.79 7.64 16 39 H 0.10 3.73 7.08 -2.39 -0.02 3.71 16 40 H 0.11 3.45 8.05 -2.38 -0.02 3.43 16 41 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 42 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 43 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 44 H 0.10 5.71 6.21 -2.91 -0.02 5.69 16 45 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 Total: -1.00 -70.03 362.67 4.00 -66.03 By element: Atomic # 1 Polarization: 34.05 SS G_CDS: 0.18 Total: 34.24 kcal Atomic # 6 Polarization: -49.85 SS G_CDS: 4.17 Total: -45.68 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -2.33 Total: -67.30 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.05 Total: -29.11 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -70.03 4.00 -66.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855390950.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.497 kcal (2) G-P(sol) polarization free energy of solvation -70.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds