Wall clock time and date at job start Tue Mar 31 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47337 * 339.65733 * 3 2 1 5 5 C 1.37095 * 120.00062 * 263.95392 * 4 3 2 6 6 H 1.08000 * 120.00271 * 201.33386 * 5 4 3 7 7 C 1.38954 * 120.00078 * 21.33254 * 5 4 3 8 8 N 1.31413 * 119.99598 * 10.87165 * 7 5 4 9 9 Si 1.86796 * 120.00017 * 190.87450 * 7 5 4 10 10 H 1.48493 * 109.47276 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47309 * 119.99986 * 9 7 5 12 12 H 1.48502 * 109.46800 * 239.99741 * 9 7 5 13 13 C 1.34778 * 120.00112 * 83.95684 * 4 3 2 14 14 O 1.21292 * 119.99888 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99928 * 359.97438 * 13 4 3 16 16 C 1.52995 * 109.47160 * 185.32872 * 15 13 4 17 17 C 1.53001 * 109.47493 * 296.85152 * 16 15 13 18 18 C 1.53784 * 113.61174 * 282.95024 * 17 16 15 19 19 C 1.53945 * 87.02004 * 220.04710 * 18 17 16 20 20 C 1.53774 * 113.61469 * 185.34522 * 17 16 15 21 21 C 1.53002 * 109.47070 * 56.85090 * 16 15 13 22 22 C 1.53783 * 113.61931 * 159.13629 * 21 16 15 23 23 C 1.53953 * 87.02171 * 220.04752 * 22 21 16 24 24 C 1.53780 * 87.11202 * 25.36041 * 23 22 21 25 25 H 4.40640 * 5.51355 * 179.97438 * 4 1 2 26 26 H 1.08996 * 109.47052 * 219.65421 * 3 2 1 27 27 H 1.09003 * 109.46655 * 99.65683 * 3 2 1 28 28 H 0.97000 * 119.99589 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.47017 * 65.33117 * 15 13 4 30 30 H 1.08998 * 109.46761 * 305.33167 * 15 13 4 31 31 H 1.08998 * 109.47237 * 176.84570 * 16 15 13 32 32 H 1.08996 * 112.84925 * 54.14476 * 17 16 15 33 33 H 1.09008 * 113.61321 * 334.56777 * 18 17 16 34 34 H 1.09001 * 113.61198 * 105.46360 * 18 17 16 35 35 H 1.09002 * 113.53792 * 270.81466 * 19 18 17 36 36 H 1.09000 * 113.74465 * 139.94253 * 19 18 17 37 37 H 1.09003 * 113.61401 * 254.52563 * 20 17 16 38 38 H 1.09000 * 113.61543 * 25.42913 * 20 17 16 39 39 H 1.09005 * 112.84925 * 290.33437 * 21 16 15 40 40 H 1.09005 * 113.60964 * 334.56992 * 22 21 16 41 41 H 1.09003 * 113.61254 * 105.46303 * 22 21 16 42 42 H 1.09000 * 113.53153 * 270.80771 * 23 22 21 43 43 H 1.08995 * 113.74263 * 139.94201 * 23 22 21 44 44 H 1.08998 * 113.61583 * 220.09625 * 24 23 22 45 45 H 1.08999 * 113.61353 * 89.18879 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2942 0.4801 5 6 3.4815 -1.4504 1.7973 6 1 4.1456 -2.2503 2.0898 7 6 2.9783 -0.5797 2.7562 8 7 2.0117 0.2541 2.4438 9 14 3.6757 -0.5942 4.4890 10 1 4.7474 -1.6178 4.5827 11 1 4.2384 0.7427 4.8074 12 1 2.5954 -0.9194 5.4546 13 6 3.2443 -2.3318 -0.3731 14 8 3.6487 -3.4039 0.0246 15 6 2.8629 -2.1601 -1.8209 16 6 2.9526 -3.5100 -2.5354 17 6 4.4005 -4.0039 -2.5129 18 6 5.3079 -3.2982 -3.5345 19 6 5.9485 -4.6736 -3.7951 20 6 4.6240 -5.2938 -3.3196 21 6 2.0565 -4.5249 -1.8225 22 6 1.6665 -5.7259 -2.7002 23 6 0.2634 -5.6250 -2.0745 24 6 0.5679 -4.1390 -1.8220 25 1 -1.0497 -0.0003 0.0003 26 1 3.0090 0.7920 0.6558 27 1 3.0092 0.1732 -1.0132 28 1 1.6607 0.8622 3.1130 29 1 3.5435 -1.4525 -2.2945 30 1 1.8427 -1.7819 -1.8855 31 1 2.6232 -3.3970 -3.5682 32 1 4.8200 -4.0394 -1.5075 33 1 4.7694 -2.8975 -4.3934 34 1 5.9901 -2.5755 -3.0866 35 1 6.7925 -4.8918 -3.1407 36 1 6.1673 -4.8638 -4.8459 37 1 4.7549 -6.1800 -2.6987 38 1 3.8982 -5.4397 -4.1196 39 1 2.4348 -4.8068 -0.8399 40 1 1.6847 -5.5101 -3.7685 41 1 2.1951 -6.6440 -2.4437 42 1 0.1513 -6.2091 -1.1611 43 1 -0.5467 -5.7902 -2.7847 44 1 0.2109 -3.7779 -0.8575 45 1 0.2852 -3.4886 -2.6497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861521240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:01 Heat of formation + Delta-G solvation = 60.771881 kcal Electronic energy + Delta-G solvation = -24363.614969 eV Core-core repulsion = 21156.238848 eV Total energy + Delta-G solvation = -3207.376121 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.98369 -38.08024 -37.40010 -35.12730 -32.36906 -31.63550 -31.14128 -27.04311 -26.28491 -25.38582 -25.04304 -24.15058 -23.94563 -21.02372 -19.59900 -18.58595 -18.45900 -17.74424 -16.56007 -16.06676 -15.38456 -15.17624 -14.78504 -14.67164 -14.18944 -13.76486 -13.64173 -12.81157 -12.54299 -12.37700 -12.28899 -12.26236 -12.00206 -11.91765 -11.59247 -11.38891 -11.30573 -11.08378 -10.94536 -10.91090 -10.47062 -10.43022 -10.31392 -10.07870 -9.96986 -9.83589 -9.47902 -9.29849 -9.22528 -9.13752 -8.77093 -8.12184 -7.75633 -6.24831 -3.85601 3.16043 3.26835 3.32698 3.75538 3.99096 4.12911 4.22449 4.85355 4.95960 5.03089 5.04773 5.09944 5.13378 5.18169 5.20275 5.27852 5.42331 5.53976 5.71280 5.86743 5.88085 5.97171 5.98162 6.02345 6.06494 6.09759 6.15477 6.16969 6.21164 6.28115 6.31802 6.36011 6.44718 6.47635 6.58230 6.61379 6.68754 6.85934 6.88693 7.08957 7.11681 7.25228 7.59136 8.14148 8.49737 8.87185 9.20883 9.42856 9.99931 10.74745 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.005540 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.504186 B = 5052.929908 C = 5638.345361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.103 4.103 3 C 0.233 3.767 4 N -0.447 5.447 5 C -0.305 4.305 6 H 0.101 0.899 7 C 0.027 3.973 8 N -0.875 5.875 9 Si 0.923 3.077 10 H -0.269 1.269 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.462 3.538 14 O -0.575 6.575 15 C -0.130 4.130 16 C -0.042 4.042 17 C -0.101 4.101 18 C -0.142 4.142 19 C -0.143 4.143 20 C -0.134 4.134 21 C -0.096 4.096 22 C -0.136 4.136 23 C -0.143 4.143 24 C -0.139 4.139 25 H 0.197 0.803 26 H 0.114 0.886 27 H 0.056 0.944 28 H 0.266 0.734 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.507 -4.183 -11.336 12.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.105 4.105 3 C 0.109 3.891 4 N -0.166 5.166 5 C -0.433 4.433 6 H 0.119 0.881 7 C -0.175 4.175 8 N -0.514 5.514 9 Si 0.751 3.249 10 H -0.194 1.194 11 H -0.208 1.208 12 H -0.210 1.210 13 C 0.252 3.748 14 O -0.459 6.459 15 C -0.170 4.170 16 C -0.060 4.060 17 C -0.119 4.119 18 C -0.180 4.180 19 C -0.181 4.181 20 C -0.171 4.171 21 C -0.114 4.114 22 C -0.173 4.173 23 C -0.180 4.180 24 C -0.176 4.176 25 H 0.214 0.786 26 H 0.132 0.868 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.136 0.864 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.076 0.924 44 H 0.082 0.918 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.644 -4.558 -11.007 11.930 hybrid contribution -0.261 0.357 0.986 1.081 sum 0.383 -4.201 -10.020 10.872 Atomic orbital electron populations 1.24220 0.95345 1.02602 1.06893 1.23208 0.94350 0.98041 0.94855 1.18282 0.84160 0.89338 0.97290 1.43698 1.56483 1.07615 1.08755 1.19694 1.26504 1.15562 0.81548 0.88104 1.25322 0.95332 0.97097 0.99771 1.69981 1.23964 1.22855 1.34616 0.85902 0.78847 0.78020 0.82173 1.19369 1.20778 1.20950 1.20085 0.83207 0.84004 0.87533 1.90395 1.50787 1.25822 1.78906 1.21605 1.02082 0.98239 0.95058 1.20783 0.94840 0.93466 0.96958 1.22809 0.94652 0.94501 0.99965 1.23002 0.99229 0.96281 0.99448 1.22813 0.97500 0.97482 1.00257 1.22902 0.96655 0.97952 0.99587 1.22721 0.93367 0.94454 1.00907 1.23004 0.96320 0.99118 0.98864 1.22811 0.97028 0.97696 1.00495 1.22895 0.97562 0.95634 1.01521 0.78624 0.86839 0.92597 0.92325 0.90895 0.90454 0.92313 0.86443 0.90915 0.92045 0.90689 0.92394 0.92131 0.90838 0.86611 0.91069 0.92180 0.90718 0.92412 0.91784 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.65 19.25 29.55 0.57 -5.08 16 2 C -0.10 -2.30 10.64 -37.12 -0.40 -2.69 16 3 C 0.23 5.13 4.89 -6.83 -0.03 5.09 16 4 N -0.45 -10.96 2.60 -117.93 -0.31 -11.27 16 5 C -0.31 -8.23 9.32 -14.93 -0.14 -8.37 16 6 H 0.10 2.85 7.38 -52.49 -0.39 2.47 16 7 C 0.03 0.71 5.10 -17.47 -0.09 0.62 16 8 N -0.87 -22.87 9.04 55.50 0.50 -22.37 16 9 Si 0.92 20.64 29.57 -169.99 -5.03 15.62 16 10 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.46 10.53 6.96 -10.98 -0.08 10.45 16 14 O -0.57 -14.33 11.28 5.55 0.06 -14.27 16 15 C -0.13 -2.33 3.77 -27.88 -0.11 -2.44 16 16 C -0.04 -0.66 1.61 -90.62 -0.15 -0.81 16 17 C -0.10 -1.59 2.70 -89.81 -0.24 -1.84 16 18 C -0.14 -1.93 7.43 -25.83 -0.19 -2.12 16 19 C -0.14 -1.78 8.09 -25.83 -0.21 -1.98 16 20 C -0.13 -1.78 6.33 -25.92 -0.16 -1.95 16 21 C -0.10 -1.61 2.36 -89.80 -0.21 -1.82 16 22 C -0.14 -1.86 5.96 -25.83 -0.15 -2.02 16 23 C -0.14 -1.97 8.09 -25.83 -0.21 -2.18 16 24 C -0.14 -2.22 6.81 -25.92 -0.18 -2.39 16 25 H 0.20 3.36 7.80 -54.10 -0.42 2.94 16 26 H 0.11 2.67 6.37 -51.93 -0.33 2.34 16 27 H 0.06 1.04 6.84 -51.93 -0.36 0.68 16 28 H 0.27 6.71 8.31 -40.82 -0.34 6.38 16 29 H 0.07 1.20 7.51 -51.93 -0.39 0.81 16 30 H 0.08 1.40 6.69 -51.93 -0.35 1.05 16 31 H 0.06 0.84 7.90 -51.93 -0.41 0.43 16 32 H 0.12 2.28 5.83 -51.93 -0.30 1.98 16 33 H 0.07 0.90 8.04 -51.92 -0.42 0.48 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.91 7.19 -51.93 -0.37 0.54 16 39 H 0.12 2.37 6.03 -51.93 -0.31 2.06 16 40 H 0.07 0.89 7.61 -51.93 -0.40 0.50 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -28.21 349.86 -8.85 -37.06 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.38 Total: 9.48 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: -1.97 Total: -19.52 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.20 Total: -33.64 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: 0.06 Total: -14.27 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.21 -8.85 -37.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861521240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.832 kcal (2) G-P(sol) polarization free energy of solvation -28.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds