Wall clock time and date at job start Tue Mar 31 2020 06:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47337 * 339.65733 * 3 2 1 5 5 C 1.37095 * 120.00062 * 263.95392 * 4 3 2 6 6 H 1.08000 * 120.00271 * 201.33386 * 5 4 3 7 7 C 1.38954 * 120.00078 * 21.33254 * 5 4 3 8 8 N 1.31413 * 119.99598 * 10.87165 * 7 5 4 9 9 Si 1.86796 * 120.00017 * 190.87450 * 7 5 4 10 10 H 1.48493 * 109.47276 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47309 * 119.99986 * 9 7 5 12 12 H 1.48502 * 109.46800 * 239.99741 * 9 7 5 13 13 C 1.34778 * 120.00112 * 83.95684 * 4 3 2 14 14 O 1.21292 * 119.99888 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99928 * 359.97438 * 13 4 3 16 16 C 1.52995 * 109.47160 * 185.32872 * 15 13 4 17 17 C 1.53001 * 109.47493 * 296.85152 * 16 15 13 18 18 C 1.53784 * 113.61174 * 282.95024 * 17 16 15 19 19 C 1.53945 * 87.02004 * 220.04710 * 18 17 16 20 20 C 1.53774 * 113.61469 * 185.34522 * 17 16 15 21 21 C 1.53002 * 109.47070 * 56.85090 * 16 15 13 22 22 C 1.53783 * 113.61931 * 159.13629 * 21 16 15 23 23 C 1.53953 * 87.02171 * 220.04752 * 22 21 16 24 24 C 1.53780 * 87.11202 * 25.36041 * 23 22 21 25 25 H 4.40640 * 5.51355 * 179.97438 * 4 1 2 26 26 H 1.08996 * 109.47052 * 219.65421 * 3 2 1 27 27 H 1.09003 * 109.46655 * 99.65683 * 3 2 1 28 28 H 0.97000 * 119.99589 * 180.02562 * 8 7 5 29 29 H 1.09003 * 109.47017 * 65.33117 * 15 13 4 30 30 H 1.08998 * 109.46761 * 305.33167 * 15 13 4 31 31 H 1.08998 * 109.47237 * 176.84570 * 16 15 13 32 32 H 1.08996 * 112.84925 * 54.14476 * 17 16 15 33 33 H 1.09008 * 113.61321 * 334.56777 * 18 17 16 34 34 H 1.09001 * 113.61198 * 105.46360 * 18 17 16 35 35 H 1.09002 * 113.53792 * 270.81466 * 19 18 17 36 36 H 1.09000 * 113.74465 * 139.94253 * 19 18 17 37 37 H 1.09003 * 113.61401 * 254.52563 * 20 17 16 38 38 H 1.09000 * 113.61543 * 25.42913 * 20 17 16 39 39 H 1.09005 * 112.84925 * 290.33437 * 21 16 15 40 40 H 1.09005 * 113.60964 * 334.56992 * 22 21 16 41 41 H 1.09003 * 113.61254 * 105.46303 * 22 21 16 42 42 H 1.09000 * 113.53153 * 270.80771 * 23 22 21 43 43 H 1.08995 * 113.74263 * 139.94201 * 23 22 21 44 44 H 1.08998 * 113.61583 * 220.09625 * 24 23 22 45 45 H 1.08999 * 113.61353 * 89.18879 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2942 0.4801 5 6 3.4815 -1.4504 1.7973 6 1 4.1456 -2.2503 2.0898 7 6 2.9783 -0.5797 2.7562 8 7 2.0117 0.2541 2.4438 9 14 3.6757 -0.5942 4.4890 10 1 4.7474 -1.6178 4.5827 11 1 4.2384 0.7427 4.8074 12 1 2.5954 -0.9194 5.4546 13 6 3.2443 -2.3318 -0.3731 14 8 3.6487 -3.4039 0.0246 15 6 2.8629 -2.1601 -1.8209 16 6 2.9526 -3.5100 -2.5354 17 6 4.4005 -4.0039 -2.5129 18 6 5.3079 -3.2982 -3.5345 19 6 5.9485 -4.6736 -3.7951 20 6 4.6240 -5.2938 -3.3196 21 6 2.0565 -4.5249 -1.8225 22 6 1.6665 -5.7259 -2.7002 23 6 0.2634 -5.6250 -2.0745 24 6 0.5679 -4.1390 -1.8220 25 1 -1.0497 -0.0003 0.0003 26 1 3.0090 0.7920 0.6558 27 1 3.0092 0.1732 -1.0132 28 1 1.6607 0.8622 3.1130 29 1 3.5435 -1.4525 -2.2945 30 1 1.8427 -1.7819 -1.8855 31 1 2.6232 -3.3970 -3.5682 32 1 4.8200 -4.0394 -1.5075 33 1 4.7694 -2.8975 -4.3934 34 1 5.9901 -2.5755 -3.0866 35 1 6.7925 -4.8918 -3.1407 36 1 6.1673 -4.8638 -4.8459 37 1 4.7549 -6.1800 -2.6987 38 1 3.8982 -5.4397 -4.1196 39 1 2.4348 -4.8068 -0.8399 40 1 1.6847 -5.5101 -3.7685 41 1 2.1951 -6.6440 -2.4437 42 1 0.1513 -6.2091 -1.1611 43 1 -0.5467 -5.7902 -2.7847 44 1 0.2109 -3.7779 -0.8575 45 1 0.2852 -3.4886 -2.6497 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861521240.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:01 Heat of formation + Delta-G solvation = 48.405978 kcal Electronic energy + Delta-G solvation = -24364.151195 eV Core-core repulsion = 21156.238848 eV Total energy + Delta-G solvation = -3207.912347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37883 -39.69729 -38.54216 -36.96246 -34.10404 -33.16727 -32.95094 -28.62554 -27.90203 -26.71224 -26.19544 -25.63643 -25.28729 -22.36864 -20.89441 -20.15989 -19.65932 -19.55617 -18.32996 -17.81023 -16.60771 -16.53653 -16.25598 -16.20775 -15.90827 -15.27202 -15.13550 -14.17441 -14.10276 -14.05237 -13.69782 -13.62820 -13.34265 -13.30369 -13.03426 -12.86893 -12.67865 -12.57454 -12.42728 -12.31285 -12.16232 -12.08649 -11.63014 -11.31629 -11.28939 -11.08339 -10.99656 -10.97202 -10.67468 -10.52570 -10.31520 -9.90375 -9.67600 -8.22949 -5.90537 1.35117 1.40103 1.52483 2.00865 2.22197 2.35693 2.44336 3.13567 3.31241 3.73316 3.79643 3.85714 3.93774 3.97088 4.01787 4.09113 4.11032 4.24987 4.27618 4.54229 4.63030 4.67388 4.76565 4.82163 4.90290 4.91984 4.95440 5.00967 5.06370 5.06979 5.10698 5.12776 5.16336 5.19879 5.27762 5.30560 5.34442 5.48671 5.48969 5.53347 5.70992 5.83567 5.93723 6.17143 6.54839 7.18897 7.24857 7.54390 8.13872 8.73891 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.016167 B = 0.005540 C = 0.004965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.504186 B = 5052.929908 C = 5638.345361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.141 4.141 3 C 0.237 3.763 4 N -0.465 5.465 5 C -0.336 4.336 6 H 0.072 0.928 7 C -0.004 4.004 8 N -0.885 5.885 9 Si 0.982 3.018 10 H -0.276 1.276 11 H -0.267 1.267 12 H -0.283 1.283 13 C 0.456 3.544 14 O -0.604 6.604 15 C -0.119 4.119 16 C -0.036 4.036 17 C -0.113 4.113 18 C -0.137 4.137 19 C -0.136 4.136 20 C -0.125 4.125 21 C -0.106 4.106 22 C -0.119 4.119 23 C -0.136 4.136 24 C -0.140 4.140 25 H 0.229 0.771 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.268 0.732 29 H 0.093 0.907 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.027 0.973 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.332 -4.164 -14.004 14.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.142 4.142 3 C 0.114 3.886 4 N -0.184 5.184 5 C -0.464 4.464 6 H 0.090 0.910 7 C -0.205 4.205 8 N -0.523 5.523 9 Si 0.807 3.193 10 H -0.201 1.201 11 H -0.192 1.192 12 H -0.209 1.209 13 C 0.247 3.753 14 O -0.490 6.490 15 C -0.159 4.159 16 C -0.055 4.055 17 C -0.131 4.131 18 C -0.174 4.174 19 C -0.173 4.173 20 C -0.162 4.162 21 C -0.124 4.124 22 C -0.156 4.156 23 C -0.173 4.173 24 C -0.178 4.178 25 H 0.245 0.755 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.068 0.932 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.046 0.954 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.197 -4.525 -13.687 14.417 hybrid contribution -0.023 0.322 1.855 1.883 sum -0.221 -4.203 -11.832 12.558 Atomic orbital electron populations 1.25046 0.96291 1.00980 1.05396 1.23490 0.94981 0.99519 0.96258 1.18265 0.84467 0.87511 0.98369 1.43911 1.57210 1.09057 1.08263 1.19566 1.27438 1.15852 0.83555 0.91011 1.25945 0.95429 0.96525 1.02647 1.70095 1.24085 1.22762 1.35396 0.85039 0.77903 0.78284 0.78078 1.20121 1.19211 1.20884 1.20995 0.81765 0.83175 0.89370 1.90401 1.51550 1.27008 1.79996 1.21593 1.02323 1.00330 0.91640 1.20830 0.94911 0.91798 0.97946 1.22658 0.94769 0.97218 0.98470 1.23020 0.98641 0.96597 0.99151 1.22774 0.96717 0.96294 1.01550 1.22880 0.97722 0.96242 0.99372 1.22568 0.93765 0.96565 0.99512 1.22941 0.95558 0.97524 0.99605 1.22778 0.98173 0.95635 1.00754 1.22924 0.97061 0.97480 1.00324 0.75451 0.88887 0.89324 0.92225 0.88917 0.90214 0.89028 0.91194 0.88618 0.93136 0.91504 0.89879 0.93184 0.88675 0.91573 0.88395 0.92097 0.91759 0.89786 0.95384 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.45 19.25 74.32 1.43 -9.02 16 2 C -0.14 -6.27 10.64 31.13 0.33 -5.94 16 3 C 0.24 10.57 4.89 84.57 0.41 10.98 16 4 N -0.46 -23.71 2.60 -645.41 -1.68 -25.38 16 5 C -0.34 -19.03 9.32 84.04 0.78 -18.25 16 6 H 0.07 4.37 7.38 -2.91 -0.02 4.35 16 7 C 0.00 -0.22 5.10 84.93 0.43 0.22 16 8 N -0.88 -46.91 9.04 21.66 0.20 -46.71 16 9 Si 0.98 43.42 29.57 68.60 2.03 45.45 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 C 0.46 21.61 6.96 87.66 0.61 22.23 16 14 O -0.60 -32.19 11.28 -3.07 -0.03 -32.22 16 15 C -0.12 -4.21 3.77 29.85 0.11 -4.09 16 16 C -0.04 -1.10 1.61 -10.79 -0.02 -1.12 16 17 C -0.11 -3.49 2.70 -10.27 -0.03 -3.51 16 18 C -0.14 -3.42 7.43 31.18 0.23 -3.18 16 19 C -0.14 -3.06 8.09 31.18 0.25 -2.81 16 20 C -0.12 -3.08 6.33 31.12 0.20 -2.89 16 21 C -0.11 -3.50 2.36 -10.27 -0.02 -3.52 16 22 C -0.12 -2.98 5.96 31.18 0.19 -2.80 16 23 C -0.14 -3.51 8.09 31.18 0.25 -3.26 16 24 C -0.14 -4.37 6.81 31.12 0.21 -4.16 16 25 H 0.23 7.26 7.80 -4.43 -0.03 7.23 16 26 H 0.09 4.49 6.37 -2.39 -0.02 4.48 16 27 H 0.09 3.25 6.84 -2.39 -0.02 3.24 16 28 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 29 H 0.09 2.89 7.51 -2.39 -0.02 2.88 16 30 H 0.08 2.80 6.69 -2.39 -0.02 2.78 16 31 H 0.09 2.24 7.90 -2.39 -0.02 2.22 16 32 H 0.07 2.87 5.83 -2.39 -0.01 2.86 16 33 H 0.10 1.97 8.04 -2.38 -0.02 1.96 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.96 7.19 -2.39 -0.02 1.94 16 39 H 0.07 2.88 6.03 -2.38 -0.01 2.87 16 40 H 0.10 1.98 7.61 -2.38 -0.02 1.96 16 41 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.09 2.47 8.10 -2.39 -0.02 2.45 16 Total: -1.00 -65.00 349.86 6.84 -58.16 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.95 Total: 31.84 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 5.38 Total: -31.13 kcal Atomic # 7 Polarization: -70.61 SS G_CDS: -1.48 Total: -72.09 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.03 Total: -32.22 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -65.00 6.84 -58.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861521240.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.568 kcal (2) G-P(sol) polarization free energy of solvation -65.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds