Wall clock time and date at job start Tue Mar 31 2020 06:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47550 * 2 1 4 4 O 1.42902 * 109.47300 * 180.02562 * 3 2 1 5 5 C 1.35891 * 116.99749 * 180.02562 * 4 3 2 6 6 C 1.38757 * 120.06011 * 359.97438 * 5 4 3 7 7 C 1.38121 * 119.94382 * 180.02562 * 6 5 4 8 8 C 1.38280 * 120.05975 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.94630 * 180.02562 * 8 7 6 10 10 N 1.46503 * 109.47197 * 89.99937 * 9 8 7 11 11 C 1.36940 * 119.99985 * 89.99735 * 10 9 8 12 12 H 1.07997 * 120.00014 * 304.47587 * 11 10 9 13 13 C 1.38819 * 119.99593 * 124.47059 * 11 10 9 14 14 N 1.31614 * 119.99402 * 164.67608 * 13 11 10 15 15 Si 1.86796 * 119.99884 * 344.67489 * 13 11 10 16 16 H 1.48505 * 109.47036 * 91.90863 * 15 13 11 17 17 H 1.48498 * 109.46870 * 211.89918 * 15 13 11 18 18 H 1.48496 * 109.47791 * 331.90421 * 15 13 11 19 19 C 1.46499 * 119.99873 * 270.00487 * 10 9 8 20 20 C 1.53003 * 117.49824 * 183.06971 * 19 10 9 21 21 C 1.52996 * 117.50225 * 114.41285 * 19 10 9 22 22 C 1.38246 * 120.11107 * 359.97438 * 8 7 6 23 23 C 1.38168 * 120.05563 * 359.76934 * 22 8 7 24 24 C 1.50699 * 120.02842 * 180.25249 * 23 22 8 25 25 H 1.09002 * 109.47015 * 59.99656 * 1 2 3 26 26 H 1.08993 * 109.47671 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47152 * 300.00111 * 1 2 3 28 28 H 1.09001 * 109.47249 * 240.00363 * 2 1 3 29 29 H 1.08995 * 109.47329 * 120.00593 * 2 1 3 30 30 H 1.09001 * 109.46548 * 59.99934 * 3 2 1 31 31 H 1.08995 * 109.47289 * 300.00617 * 3 2 1 32 32 H 1.08000 * 120.02443 * 0.03185 * 6 5 4 33 33 H 1.08007 * 119.97058 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.47084 * 210.00078 * 9 8 7 35 35 H 1.08995 * 109.47135 * 330.00102 * 9 8 7 36 36 H 0.97010 * 119.99451 * 180.02562 * 14 13 11 37 37 H 1.08998 * 115.54940 * 328.72996 * 19 10 9 38 38 H 1.09006 * 117.49522 * 0.02562 * 20 19 10 39 39 H 1.08995 * 117.49667 * 145.01460 * 20 19 10 40 40 H 1.09000 * 117.49849 * 214.98114 * 21 19 10 41 41 H 1.09004 * 117.49622 * 359.96268 * 21 19 10 42 42 H 1.08004 * 119.97086 * 180.02562 * 22 8 7 43 43 H 1.08999 * 109.47120 * 270.22708 * 24 23 22 44 44 H 1.08995 * 109.47290 * 30.22979 * 24 23 22 45 45 H 1.09000 * 109.46722 * 150.23484 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0001 6 6 3.3315 3.8177 0.0003 7 6 3.9611 5.0471 0.0003 8 6 5.3420 5.1181 0.0003 9 6 6.0263 6.4609 0.0008 10 7 6.2480 6.8955 1.3822 11 6 7.4083 6.5601 2.0276 12 1 7.7022 5.5239 2.1065 13 6 8.2067 7.5521 2.5803 14 7 9.1446 7.2348 3.4475 15 14 7.9499 9.3370 2.0933 16 1 7.0007 9.9767 3.0394 17 1 9.2498 10.0537 2.1362 18 1 7.3951 9.3999 0.7173 19 6 5.2284 7.6887 2.0731 20 6 5.5492 8.1728 3.4886 21 6 4.5312 7.0498 3.2758 22 6 6.0961 3.9594 0.0009 23 6 5.4712 2.7272 0.0063 24 6 6.2938 1.4645 0.0127 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 2.2529 3.7628 0.0009 33 1 3.3742 5.9538 0.0011 34 1 6.9842 6.3807 -0.5131 35 1 5.3983 7.1888 -0.5127 36 1 9.7023 7.9281 3.8340 37 1 4.6351 8.3470 1.4385 38 1 6.5192 7.9015 3.9056 39 1 5.1666 9.1493 3.7853 40 1 3.4792 7.2878 3.4326 41 1 4.8307 6.0389 3.5526 42 1 7.1746 4.0175 0.0013 43 1 6.4961 1.1575 -1.0134 44 1 7.2357 1.6471 0.5297 45 1 5.7443 0.6756 0.5263 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876637931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:30 Heat of formation + Delta-G solvation = 23.228766 kcal Electronic energy + Delta-G solvation = -23208.282575 eV Core-core repulsion = 19999.278463 eV Total energy + Delta-G solvation = -3209.004113 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.97306 -37.87006 -36.86316 -34.20341 -33.12479 -32.38110 -31.67283 -29.47646 -26.95473 -26.59287 -25.15951 -23.28505 -22.54366 -21.51978 -20.93468 -20.24823 -19.60070 -17.75880 -16.75115 -16.30382 -15.91062 -15.33576 -14.66458 -14.54597 -14.28719 -14.02451 -13.83905 -13.61192 -13.15034 -12.97688 -12.74872 -12.51248 -12.34167 -12.11273 -12.05047 -11.83942 -11.65020 -11.42250 -11.21274 -11.14263 -10.77726 -10.72816 -10.50857 -10.46201 -10.30976 -10.23209 -9.78050 -9.46493 -9.10921 -8.42990 -8.32312 -7.58860 -6.42863 -6.00175 -3.69698 1.80125 1.91050 3.31504 3.40108 3.48753 3.56371 4.16734 4.53882 4.67659 4.69951 4.91596 5.00832 5.05670 5.11062 5.18336 5.20877 5.26154 5.35258 5.41598 5.52122 5.67327 5.72820 5.81897 5.82596 5.88095 5.91312 5.95270 6.01049 6.03136 6.09254 6.18827 6.20121 6.34821 6.53917 6.57806 6.63133 6.68399 6.77083 6.89319 7.07188 7.25391 7.29932 7.34442 7.73431 8.10912 8.54271 9.02697 9.65049 10.15255 11.09203 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024465 B = 0.003948 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.195467 B = 7091.043360 C = 7584.225349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.060 3.940 4 O -0.318 6.318 5 C 0.110 3.890 6 C -0.209 4.209 7 C -0.078 4.078 8 C -0.107 4.107 9 C 0.185 3.815 10 N -0.566 5.566 11 C -0.282 4.282 12 H 0.070 0.930 13 C 0.057 3.943 14 N -0.898 5.898 15 Si 0.885 3.115 16 H -0.271 1.271 17 H -0.305 1.305 18 H -0.270 1.270 19 C 0.111 3.889 20 C -0.198 4.198 21 C -0.211 4.211 22 C -0.063 4.063 23 C -0.121 4.121 24 C -0.100 4.100 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.066 0.934 35 H 0.044 0.956 36 H 0.265 0.735 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.128 0.872 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.115 -9.224 -7.954 18.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.015 4.015 4 O -0.233 6.233 5 C 0.066 3.934 6 C -0.228 4.228 7 C -0.097 4.097 8 C -0.110 4.110 9 C 0.059 3.941 10 N -0.285 5.285 11 C -0.411 4.411 12 H 0.088 0.912 13 C -0.146 4.146 14 N -0.537 5.537 15 Si 0.713 3.287 16 H -0.196 1.196 17 H -0.233 1.233 18 H -0.195 1.195 19 C 0.003 3.997 20 C -0.236 4.236 21 C -0.251 4.251 22 C -0.082 4.082 23 C -0.122 4.122 24 C -0.157 4.157 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.137 0.863 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.106 0.894 42 H 0.146 0.854 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.844 -9.348 -7.864 18.463 hybrid contribution -0.396 1.183 0.130 1.255 sum -14.240 -8.164 -7.734 18.145 Atomic orbital electron populations 1.21687 0.94499 1.02302 1.02185 1.21468 0.95826 0.95226 1.03536 1.22758 0.79412 0.98199 1.01151 1.85985 1.20403 1.27534 1.89334 1.18663 0.91657 0.83645 0.99468 1.21051 0.99065 0.92596 1.10039 1.20730 0.94346 0.96283 0.98310 1.20833 0.93412 0.97691 0.99028 1.19926 0.97893 0.89411 0.86837 1.43545 1.15643 1.60795 1.08512 1.18542 0.96453 0.93050 1.33024 0.91232 1.25858 0.94299 0.98699 0.95708 1.69872 1.22053 1.33831 1.27900 0.86792 0.76187 0.85657 0.80034 1.19631 1.23308 1.19512 1.21287 0.94219 0.96989 0.87176 1.23507 1.02175 0.96720 1.01209 1.23324 0.95284 0.98356 1.08184 1.20851 1.00035 0.90317 0.96979 1.19218 0.90372 0.96117 1.06482 1.20546 0.98949 0.94647 1.01560 0.92446 0.91898 0.92382 0.90998 0.90928 0.92365 0.92457 0.86529 0.86652 0.91569 0.93760 0.92566 0.89703 0.86258 0.90838 0.91309 0.89390 0.85390 0.92054 0.91690 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.15 0.37 -0.63 16 2 C -0.12 -1.07 6.30 -26.73 -0.17 -1.24 16 3 C 0.06 0.66 4.74 37.16 0.18 0.84 16 4 O -0.32 -4.63 9.18 -19.40 -0.18 -4.81 16 5 C 0.11 1.79 6.66 -39.21 -0.26 1.53 16 6 C -0.21 -3.24 9.04 -39.43 -0.36 -3.60 16 7 C -0.08 -1.30 9.69 -39.61 -0.38 -1.68 16 8 C -0.11 -1.97 5.46 -104.60 -0.57 -2.55 16 9 C 0.18 3.67 5.83 -5.19 -0.03 3.64 16 10 N -0.57 -13.15 2.03 -167.02 -0.34 -13.49 16 11 C -0.28 -7.65 9.17 -15.06 -0.14 -7.78 16 12 H 0.07 2.09 8.06 -52.49 -0.42 1.67 16 13 C 0.06 1.59 3.74 -17.43 -0.07 1.52 16 14 N -0.90 -26.61 13.97 55.49 0.78 -25.84 16 15 Si 0.89 21.89 24.88 -169.99 -4.23 17.66 16 16 H -0.27 -6.42 5.80 56.52 0.33 -6.09 16 17 H -0.31 -7.73 7.11 56.52 0.40 -7.33 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 C 0.11 2.38 5.16 -67.93 -0.35 2.03 16 20 C -0.20 -4.40 6.69 -26.70 -0.18 -4.58 16 21 C -0.21 -4.33 10.36 -26.70 -0.28 -4.61 16 22 C -0.06 -1.15 9.35 -39.60 -0.37 -1.52 16 23 C -0.12 -2.05 5.89 -104.47 -0.62 -2.67 16 24 C -0.10 -1.45 9.79 36.01 0.35 -1.10 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 31 H 0.06 0.58 7.66 -51.93 -0.40 0.18 16 32 H 0.12 1.52 6.30 -52.49 -0.33 1.19 16 33 H 0.12 1.75 8.06 -52.48 -0.42 1.33 16 34 H 0.07 1.33 7.98 -51.93 -0.41 0.91 16 35 H 0.04 0.79 8.01 -51.93 -0.42 0.38 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.09 1.65 8.14 -51.93 -0.42 1.22 16 38 H 0.12 3.08 5.08 -51.93 -0.26 2.81 16 39 H 0.07 1.49 7.86 -51.93 -0.41 1.08 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.09 2.00 8.14 -51.93 -0.42 1.57 16 42 H 0.13 2.36 8.06 -52.48 -0.42 1.93 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.92 8.09 -51.93 -0.42 0.50 16 45 H 0.06 0.90 7.53 -51.93 -0.39 0.51 16 LS Contribution 359.81 15.07 5.42 5.42 Total: -1.00 -29.89 359.81 -9.14 -39.03 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -7.72 Total: 4.42 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -2.87 Total: -22.40 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.44 Total: -39.33 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.18 Total: -4.81 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.23 Total: 17.66 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.89 -9.14 -39.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876637931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.260 kcal (2) G-P(sol) polarization free energy of solvation -29.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds