Wall clock time and date at job start Tue Mar 31 2020 06:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47550 * 2 1 4 4 O 1.42902 * 109.47300 * 180.02562 * 3 2 1 5 5 C 1.35891 * 116.99749 * 180.02562 * 4 3 2 6 6 C 1.38757 * 120.06011 * 359.97438 * 5 4 3 7 7 C 1.38121 * 119.94382 * 180.02562 * 6 5 4 8 8 C 1.38280 * 120.05975 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.94630 * 180.02562 * 8 7 6 10 10 N 1.46503 * 109.47197 * 89.99937 * 9 8 7 11 11 C 1.36940 * 119.99985 * 89.99735 * 10 9 8 12 12 H 1.07997 * 120.00014 * 304.47587 * 11 10 9 13 13 C 1.38819 * 119.99593 * 124.47059 * 11 10 9 14 14 N 1.31614 * 119.99402 * 164.67608 * 13 11 10 15 15 Si 1.86796 * 119.99884 * 344.67489 * 13 11 10 16 16 H 1.48505 * 109.47036 * 91.90863 * 15 13 11 17 17 H 1.48498 * 109.46870 * 211.89918 * 15 13 11 18 18 H 1.48496 * 109.47791 * 331.90421 * 15 13 11 19 19 C 1.46499 * 119.99873 * 270.00487 * 10 9 8 20 20 C 1.53003 * 117.49824 * 183.06971 * 19 10 9 21 21 C 1.52996 * 117.50225 * 114.41285 * 19 10 9 22 22 C 1.38246 * 120.11107 * 359.97438 * 8 7 6 23 23 C 1.38168 * 120.05563 * 359.76934 * 22 8 7 24 24 C 1.50699 * 120.02842 * 180.25249 * 23 22 8 25 25 H 1.09002 * 109.47015 * 59.99656 * 1 2 3 26 26 H 1.08993 * 109.47671 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47152 * 300.00111 * 1 2 3 28 28 H 1.09001 * 109.47249 * 240.00363 * 2 1 3 29 29 H 1.08995 * 109.47329 * 120.00593 * 2 1 3 30 30 H 1.09001 * 109.46548 * 59.99934 * 3 2 1 31 31 H 1.08995 * 109.47289 * 300.00617 * 3 2 1 32 32 H 1.08000 * 120.02443 * 0.03185 * 6 5 4 33 33 H 1.08007 * 119.97058 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.47084 * 210.00078 * 9 8 7 35 35 H 1.08995 * 109.47135 * 330.00102 * 9 8 7 36 36 H 0.97010 * 119.99451 * 180.02562 * 14 13 11 37 37 H 1.08998 * 115.54940 * 328.72996 * 19 10 9 38 38 H 1.09006 * 117.49522 * 0.02562 * 20 19 10 39 39 H 1.08995 * 117.49667 * 145.01460 * 20 19 10 40 40 H 1.09000 * 117.49849 * 214.98114 * 21 19 10 41 41 H 1.09004 * 117.49622 * 359.96268 * 21 19 10 42 42 H 1.08004 * 119.97086 * 180.02562 * 22 8 7 43 43 H 1.08999 * 109.47120 * 270.22708 * 24 23 22 44 44 H 1.08995 * 109.47290 * 30.22979 * 24 23 22 45 45 H 1.09000 * 109.46722 * 150.23484 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0860 2.6532 -0.0001 6 6 3.3315 3.8177 0.0003 7 6 3.9611 5.0471 0.0003 8 6 5.3420 5.1181 0.0003 9 6 6.0263 6.4609 0.0008 10 7 6.2480 6.8955 1.3822 11 6 7.4083 6.5601 2.0276 12 1 7.7022 5.5239 2.1065 13 6 8.2067 7.5521 2.5803 14 7 9.1446 7.2348 3.4475 15 14 7.9499 9.3370 2.0933 16 1 7.0007 9.9767 3.0394 17 1 9.2498 10.0537 2.1362 18 1 7.3951 9.3999 0.7173 19 6 5.2284 7.6887 2.0731 20 6 5.5492 8.1728 3.4886 21 6 4.5312 7.0498 3.2758 22 6 6.0961 3.9594 0.0009 23 6 5.4712 2.7272 0.0063 24 6 6.2938 1.4645 0.0127 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 2.2529 3.7628 0.0009 33 1 3.3742 5.9538 0.0011 34 1 6.9842 6.3807 -0.5131 35 1 5.3983 7.1888 -0.5127 36 1 9.7023 7.9281 3.8340 37 1 4.6351 8.3470 1.4385 38 1 6.5192 7.9015 3.9056 39 1 5.1666 9.1493 3.7853 40 1 3.4792 7.2878 3.4326 41 1 4.8307 6.0389 3.5526 42 1 7.1746 4.0175 0.0013 43 1 6.4961 1.1575 -1.0134 44 1 7.2357 1.6471 0.5297 45 1 5.7443 0.6756 0.5263 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876637931.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:29 Heat of formation + Delta-G solvation = 8.379323 kcal Electronic energy + Delta-G solvation = -23208.926496 eV Core-core repulsion = 19999.278463 eV Total energy + Delta-G solvation = -3209.648033 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17987 -39.33431 -38.32798 -35.22055 -34.60310 -33.98380 -33.28312 -30.97876 -28.01596 -27.85823 -26.67417 -25.00183 -23.52023 -23.21474 -22.04673 -21.63514 -21.28146 -18.93187 -18.70603 -17.21266 -17.14695 -16.92606 -16.61097 -15.91162 -15.40158 -15.26280 -15.18888 -15.05975 -14.72352 -14.18611 -14.02185 -13.91060 -13.63838 -13.47751 -13.15275 -13.02991 -12.96055 -12.84457 -12.58430 -12.27525 -12.17144 -12.06814 -12.04543 -11.98120 -11.77208 -11.51871 -11.45584 -11.26087 -10.84911 -10.47396 -9.64503 -8.90573 -8.34579 -8.09397 -5.83748 0.49450 0.58145 1.44723 1.47295 1.60344 2.28955 2.48953 2.80252 3.03869 3.34671 3.48161 3.86562 3.93554 3.96894 4.04285 4.19156 4.25932 4.31211 4.33612 4.37688 4.48468 4.50523 4.53701 4.56841 4.67011 4.73715 4.80317 4.84850 4.87275 4.92754 5.00038 5.05621 5.08489 5.12466 5.19331 5.33912 5.35473 5.37549 5.47686 5.56230 5.57208 5.89602 5.98147 6.02684 6.32885 6.56080 7.13329 7.60835 8.12168 8.98490 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.024465 B = 0.003948 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.195467 B = 7091.043360 C = 7584.225349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C 0.051 3.949 4 O -0.328 6.328 5 C 0.109 3.891 6 C -0.205 4.205 7 C -0.077 4.077 8 C -0.125 4.125 9 C 0.184 3.816 10 N -0.577 5.577 11 C -0.270 4.270 12 H 0.020 0.980 13 C 0.011 3.989 14 N -0.948 5.948 15 Si 0.946 3.054 16 H -0.250 1.250 17 H -0.316 1.316 18 H -0.259 1.259 19 C 0.106 3.894 20 C -0.213 4.213 21 C -0.193 4.193 22 C -0.083 4.083 23 C -0.138 4.138 24 C -0.096 4.096 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.138 0.862 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.264 0.736 37 H 0.123 0.877 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.109 0.891 41 H 0.055 0.945 42 H 0.109 0.891 43 H 0.076 0.924 44 H 0.058 0.942 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.830 -8.357 -9.133 21.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.023 4.023 4 O -0.242 6.242 5 C 0.064 3.936 6 C -0.223 4.223 7 C -0.095 4.095 8 C -0.128 4.128 9 C 0.060 3.940 10 N -0.297 5.297 11 C -0.400 4.400 12 H 0.037 0.963 13 C -0.187 4.187 14 N -0.589 5.589 15 Si 0.772 3.228 16 H -0.174 1.174 17 H -0.245 1.245 18 H -0.183 1.183 19 C -0.001 4.001 20 C -0.251 4.251 21 C -0.234 4.234 22 C -0.102 4.102 23 C -0.138 4.138 24 C -0.153 4.153 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.165 0.835 33 H 0.156 0.844 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.140 0.860 38 H 0.096 0.904 39 H 0.118 0.882 40 H 0.127 0.873 41 H 0.074 0.926 42 H 0.127 0.873 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.604 -8.498 -9.063 21.546 hybrid contribution 0.687 0.717 0.499 1.112 sum -16.917 -7.780 -8.564 20.495 Atomic orbital electron populations 1.21677 0.92732 1.03218 1.02662 1.21488 0.97202 0.93721 1.03337 1.23088 0.77379 0.99953 1.01919 1.85990 1.22579 1.26713 1.88954 1.18782 0.91519 0.84723 0.98566 1.21363 1.00573 0.91770 1.08614 1.20938 0.93440 0.97686 0.97466 1.20712 0.94482 0.96672 1.00891 1.19989 0.98068 0.90944 0.85040 1.43633 1.15057 1.61197 1.09772 1.18227 0.98063 0.90950 1.32729 0.96264 1.26445 0.93994 1.02786 0.95468 1.70004 1.23931 1.35105 1.29904 0.85824 0.75949 0.80595 0.80470 1.17432 1.24547 1.18262 1.21598 0.93954 0.97152 0.87376 1.23425 1.01023 0.98548 1.02067 1.23247 0.96951 0.96153 1.07009 1.20823 0.99357 0.91519 0.98529 1.19447 0.91521 0.96265 1.06601 1.20537 0.98384 0.93859 1.02508 0.91731 0.90831 0.92131 0.90945 0.91465 0.91944 0.91156 0.83506 0.84426 0.93080 0.90752 0.92739 0.85955 0.90381 0.88216 0.87284 0.92598 0.87339 0.90517 0.92313 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 71.98 0.71 -0.83 16 2 C -0.12 -1.82 6.30 30.59 0.19 -1.62 16 3 C 0.05 0.99 4.74 71.98 0.34 1.33 16 4 O -0.33 -9.00 9.18 -92.32 -0.85 -9.84 16 5 C 0.11 3.40 6.66 22.51 0.15 3.55 16 6 C -0.20 -5.81 9.04 22.37 0.20 -5.60 16 7 C -0.08 -2.37 9.69 22.25 0.22 -2.15 16 8 C -0.13 -4.57 5.46 -19.85 -0.11 -4.68 16 9 C 0.18 7.17 5.83 85.63 0.50 7.67 16 10 N -0.58 -26.52 2.03 -682.33 -1.39 -27.91 16 11 C -0.27 -15.21 9.17 84.03 0.77 -14.44 16 12 H 0.02 1.28 8.06 -2.91 -0.02 1.25 16 13 C 0.01 0.64 3.74 84.86 0.32 0.96 16 14 N -0.95 -58.83 13.97 21.65 0.30 -58.52 16 15 Si 0.95 45.19 24.88 68.60 1.71 46.89 16 16 H -0.25 -11.01 5.80 99.48 0.58 -10.44 16 17 H -0.32 -15.63 7.11 99.48 0.71 -14.92 16 18 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 19 C 0.11 4.25 5.16 44.99 0.23 4.49 16 20 C -0.21 -9.02 6.69 30.62 0.20 -8.81 16 21 C -0.19 -7.47 10.36 30.61 0.32 -7.15 16 22 C -0.08 -3.17 9.35 22.25 0.21 -2.96 16 23 C -0.14 -4.71 5.89 -19.77 -0.12 -4.83 16 24 C -0.10 -2.83 9.79 71.24 0.70 -2.13 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.59 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.16 7.66 -2.39 -0.02 1.14 16 31 H 0.07 1.19 7.66 -2.39 -0.02 1.17 16 32 H 0.15 3.21 6.30 -2.91 -0.02 3.19 16 33 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 34 H 0.05 2.09 7.98 -2.38 -0.02 2.08 16 35 H 0.07 2.44 8.01 -2.39 -0.02 2.42 16 36 H 0.26 15.53 8.31 -92.70 -0.77 14.75 16 37 H 0.12 4.07 8.14 -2.39 -0.02 4.05 16 38 H 0.08 4.04 5.08 -2.38 -0.01 4.03 16 39 H 0.10 3.67 7.86 -2.39 -0.02 3.66 16 40 H 0.11 3.35 8.14 -2.39 -0.02 3.34 16 41 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 43 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.06 1.76 8.09 -2.39 -0.02 1.74 16 45 H 0.07 1.91 7.53 -2.39 -0.02 1.89 16 Total: -1.00 -67.38 359.81 5.42 -61.96 By element: Atomic # 1 Polarization: 23.82 SS G_CDS: 0.81 Total: 24.64 kcal Atomic # 6 Polarization: -42.05 SS G_CDS: 4.84 Total: -37.21 kcal Atomic # 7 Polarization: -85.35 SS G_CDS: -1.08 Total: -86.43 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: -0.85 Total: -9.84 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.71 Total: 46.89 kcal Total: -67.38 5.42 -61.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876637931.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.335 kcal (2) G-P(sol) polarization free energy of solvation -67.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds