Wall clock time and date at job start Tue Mar 31 2020 06:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46918 * 2 1 4 4 N 1.46906 * 109.46924 * 174.72064 * 3 2 1 5 5 C 1.46897 * 110.99727 * 196.06527 * 4 3 2 6 6 C 1.50699 * 109.47118 * 74.14775 * 5 4 3 7 7 C 1.38165 * 120.03342 * 259.99717 * 6 5 4 8 8 C 1.38244 * 120.06123 * 179.97438 * 7 6 5 9 9 C 1.38285 * 120.10667 * 0.02562 * 8 7 6 10 10 C 1.38124 * 120.06230 * 0.02562 * 9 8 7 11 11 C 1.38715 * 120.02753 * 80.00086 * 6 5 4 12 12 O 1.35897 * 120.05432 * 359.97438 * 11 6 5 13 13 C 1.46901 * 110.99856 * 72.11180 * 4 3 2 14 14 C 1.52999 * 109.46845 * 202.02969 * 13 4 3 15 15 C 1.50699 * 115.55271 * 292.24375 * 14 13 4 16 16 H 1.08000 * 120.00322 * 113.99594 * 15 14 13 17 17 C 1.37881 * 120.00111 * 294.00036 * 15 14 13 18 18 N 1.31511 * 120.00258 * 161.26637 * 17 15 14 19 19 Si 1.86802 * 119.99590 * 341.26326 * 17 15 14 20 20 H 1.48503 * 109.47115 * 90.55180 * 19 17 15 21 21 H 1.48507 * 109.46960 * 210.54874 * 19 17 15 22 22 H 1.48499 * 109.47322 * 330.55086 * 19 17 15 23 23 C 1.52997 * 117.49951 * 146.57496 * 14 13 4 24 24 C 1.53004 * 117.49949 * 77.91606 * 14 13 4 25 25 H 1.09003 * 109.47226 * 64.92613 * 1 2 3 26 26 H 1.08999 * 109.47125 * 184.92743 * 1 2 3 27 27 H 1.09002 * 109.47547 * 304.92605 * 1 2 3 28 28 H 1.09000 * 109.47480 * 239.99683 * 2 1 3 29 29 H 1.09007 * 109.47113 * 119.99520 * 2 1 3 30 30 H 1.08996 * 109.47515 * 54.72097 * 3 2 1 31 31 H 1.09002 * 109.46938 * 294.71727 * 3 2 1 32 32 H 1.08999 * 109.47209 * 314.15231 * 5 4 3 33 33 H 1.08998 * 109.47394 * 194.14809 * 5 4 3 34 34 H 1.08001 * 119.96843 * 359.97438 * 7 6 5 35 35 H 1.07993 * 119.94814 * 180.27924 * 8 7 6 36 36 H 1.08008 * 119.97203 * 179.97438 * 9 8 7 37 37 H 1.07997 * 120.03234 * 180.02562 * 10 9 8 38 38 H 0.96698 * 114.00551 * 270.02757 * 12 11 6 39 39 H 1.08998 * 109.47473 * 322.02999 * 13 4 3 40 40 H 1.09003 * 109.47033 * 82.03357 * 13 4 3 41 41 H 0.97004 * 120.00272 * 185.00454 * 18 17 15 42 42 H 1.09003 * 117.49685 * 359.97438 * 23 14 13 43 43 H 1.08995 * 117.50303 * 145.01711 * 23 14 13 44 44 H 1.09004 * 117.49568 * 214.98238 * 24 14 13 45 45 H 1.09002 * 117.49322 * 359.97427 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5034 1.4445 0.1274 5 6 3.9967 2.7741 0.5106 6 6 3.6867 3.0253 1.9638 7 6 2.5974 3.7993 2.3149 8 6 2.3123 4.0296 3.6478 9 6 3.1165 3.4867 4.6331 10 6 4.2073 2.7130 4.2875 11 6 4.4950 2.4796 2.9503 12 8 5.5668 1.7176 2.6077 13 6 4.1405 0.9841 -1.1136 14 6 5.5509 0.4775 -0.8052 15 6 6.5387 1.5292 -0.3703 16 1 6.9385 1.5127 0.6328 17 6 6.9322 2.5126 -1.2531 18 7 7.4829 3.6186 -0.8027 19 14 6.6832 2.2736 -3.0889 20 1 5.3572 2.8138 -3.4830 21 1 7.7506 2.9917 -3.8309 22 1 6.7438 0.8255 -3.4124 23 6 6.0822 -0.6871 -1.6433 24 6 5.6814 -0.9144 -0.1835 25 1 -0.3634 0.4355 -0.9308 26 1 -0.3633 -1.0239 0.0883 27 1 -0.3634 0.5884 0.8426 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6015 1.9830 0.8389 31 1 1.7559 1.9283 -0.9335 32 1 3.5088 3.5329 -0.1013 33 1 5.0746 2.8204 0.3557 34 1 1.9681 4.2248 1.5472 35 1 1.4578 4.6312 3.9202 36 1 2.8919 3.6684 5.6738 37 1 4.8348 2.2889 5.0574 38 1 5.3687 0.7747 2.5250 39 1 3.5509 0.1762 -1.5467 40 1 4.1982 1.8115 -1.8210 41 1 7.6932 4.3403 -1.4157 42 1 5.4267 -1.0926 -2.4140 43 1 7.1461 -0.6928 -1.8798 44 1 6.4819 -1.0695 0.5398 45 1 4.7623 -1.4690 0.0062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878150897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:44 Heat of formation + Delta-G solvation = 11.577004 kcal Electronic energy + Delta-G solvation = -24567.072564 eV Core-core repulsion = 21357.563193 eV Total energy + Delta-G solvation = -3209.509371 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.44321 -37.76588 -35.93735 -35.59299 -33.03981 -32.08643 -30.82396 -29.26282 -26.87301 -25.98854 -25.20588 -22.64586 -22.04285 -21.47672 -20.78259 -20.12114 -18.79821 -17.51650 -16.38532 -15.69144 -15.35969 -15.01212 -14.90915 -14.60037 -14.34074 -13.91051 -13.69075 -13.44017 -13.06471 -12.71182 -12.64783 -12.36587 -11.92908 -11.81676 -11.71740 -11.70246 -11.35214 -11.17476 -10.95871 -10.75543 -10.70761 -10.38123 -10.19872 -10.17534 -10.09361 -9.66842 -9.29246 -8.93751 -8.61205 -8.40561 -8.15989 -7.98292 -7.50958 -6.04462 -3.94840 1.74983 1.76801 3.28753 3.41512 3.49791 4.05066 4.46650 4.61377 4.96124 5.05005 5.20650 5.26085 5.27548 5.31157 5.40252 5.43152 5.61607 5.69380 5.76633 5.81223 5.94503 5.99877 6.01127 6.10098 6.14609 6.22512 6.26394 6.37664 6.40392 6.43014 6.46977 6.54394 6.63185 6.67086 6.76484 6.85379 6.85985 7.07954 7.16941 7.24432 7.27626 7.44184 7.82539 7.89702 8.07432 8.50812 8.65026 9.12605 9.59183 11.03388 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.007393 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.406720 B = 3786.553752 C = 4761.575604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.047 3.953 4 N -0.513 5.513 5 C 0.067 3.933 6 C -0.080 4.080 7 C -0.111 4.111 8 C -0.142 4.142 9 C -0.117 4.117 10 C -0.158 4.158 11 C 0.143 3.857 12 O -0.471 6.471 13 C 0.090 3.910 14 C 0.014 3.986 15 C -0.473 4.473 16 H 0.093 0.907 17 C 0.079 3.921 18 N -0.885 5.885 19 Si 0.851 3.149 20 H -0.284 1.284 21 H -0.294 1.294 22 H -0.248 1.248 23 C -0.203 4.203 24 C -0.172 4.172 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.021 0.979 32 H 0.018 0.982 33 H 0.163 0.837 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.388 0.612 39 H 0.049 0.951 40 H 0.028 0.972 41 H 0.262 0.738 42 H 0.062 0.938 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.853 -3.820 5.243 13.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.081 4.081 4 N -0.236 5.236 5 C -0.059 4.059 6 C -0.081 4.081 7 C -0.130 4.130 8 C -0.160 4.160 9 C -0.136 4.136 10 C -0.177 4.177 11 C 0.097 3.903 12 O -0.280 6.280 13 C -0.037 4.037 14 C 0.013 3.987 15 C -0.510 4.510 16 H 0.111 0.889 17 C -0.124 4.124 18 N -0.521 5.521 19 Si 0.679 3.321 20 H -0.211 1.211 21 H -0.221 1.221 22 H -0.172 1.172 23 C -0.242 4.242 24 C -0.209 4.209 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.180 0.820 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.244 0.756 39 H 0.067 0.933 40 H 0.046 0.954 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.263 -3.457 5.541 13.020 hybrid contribution -0.721 0.233 -1.813 1.965 sum -11.985 -3.224 3.728 12.958 Atomic orbital electron populations 1.21739 0.96441 1.01155 1.01343 1.21500 0.94415 0.97192 1.02394 1.22236 0.90010 0.96361 0.99524 1.61762 1.02702 1.25875 1.33231 1.21755 1.07764 0.87584 0.88783 1.20376 0.93575 0.97324 0.96813 1.20980 0.97021 0.99073 0.95925 1.20950 1.00339 1.01690 0.92996 1.20843 0.95466 0.98462 0.98785 1.21433 0.98303 1.02037 0.95910 1.18348 0.87089 0.94436 0.90379 1.84904 1.30011 1.22081 1.91050 1.21829 0.95074 0.97487 0.89330 1.19331 0.92777 0.87973 0.98624 1.20334 1.22804 1.07836 1.00002 0.88899 1.24933 0.94685 0.94868 0.97888 1.69968 1.43005 1.04190 1.34966 0.87253 0.77254 0.80052 0.87581 1.21068 1.22114 1.17216 1.23090 1.00476 1.07692 0.92906 1.22639 1.00785 1.02195 0.95283 0.93263 0.93016 0.92922 0.92358 0.91314 0.91284 0.96052 0.96331 0.82003 0.86824 0.86832 0.86664 0.86144 0.75563 0.93259 0.95368 0.92767 0.91964 0.89857 0.90174 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 37.16 0.37 -1.31 16 2 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 3 C 0.05 0.74 4.78 -3.82 -0.02 0.72 16 4 N -0.51 -9.49 4.31 -236.07 -1.02 -10.51 16 5 C 0.07 1.38 4.53 -4.98 -0.02 1.36 16 6 C -0.08 -1.48 4.92 -104.47 -0.51 -1.99 16 7 C -0.11 -1.78 8.48 -39.61 -0.34 -2.11 16 8 C -0.14 -1.99 10.04 -39.56 -0.40 -2.39 16 9 C -0.12 -1.63 10.04 -39.61 -0.40 -2.03 16 10 C -0.16 -2.49 9.99 -39.43 -0.39 -2.88 16 11 C 0.14 2.63 6.68 -39.21 -0.26 2.37 16 12 O -0.47 -9.23 11.38 -19.42 -0.22 -9.45 16 13 C 0.09 1.83 4.56 -3.82 -0.02 1.81 16 14 C 0.01 0.31 1.02 -155.66 -0.16 0.15 16 15 C -0.47 -11.97 6.48 -34.44 -0.22 -12.20 16 16 H 0.09 2.60 6.79 -52.49 -0.36 2.25 16 17 C 0.08 2.13 4.87 -17.82 -0.09 2.04 16 18 N -0.88 -25.59 13.95 55.43 0.77 -24.81 16 19 Si 0.85 20.65 25.70 -169.99 -4.37 16.28 16 20 H -0.28 -6.90 6.96 56.52 0.39 -6.50 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.25 -5.73 5.46 56.52 0.31 -5.42 16 23 C -0.20 -4.15 7.57 -26.70 -0.20 -4.36 16 24 C -0.17 -3.28 9.96 -26.69 -0.27 -3.55 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.83 6.71 -51.93 -0.35 0.48 16 29 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 30 H 0.07 1.06 6.33 -51.93 -0.33 0.73 16 31 H 0.02 0.34 8.05 -51.93 -0.42 -0.07 16 32 H 0.02 0.38 7.88 -51.93 -0.41 -0.03 16 33 H 0.16 3.99 3.99 -51.93 -0.21 3.78 16 34 H 0.11 1.65 8.04 -52.49 -0.42 1.23 16 35 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 36 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.12 1.69 8.06 -52.49 -0.42 1.26 16 38 H 0.39 6.55 9.06 45.56 0.41 6.97 16 39 H 0.05 0.91 6.24 -51.93 -0.32 0.59 16 40 H 0.03 0.63 5.98 -51.93 -0.31 0.32 16 41 H 0.26 7.28 8.32 -40.82 -0.34 6.94 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.08 1.79 7.89 -51.93 -0.41 1.38 16 44 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 351.03 15.07 5.29 5.29 Total: -1.00 -27.86 351.03 -9.21 -37.07 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -6.59 Total: 12.25 kcal Atomic # 6 Polarization: -23.04 SS G_CDS: -3.09 Total: -26.12 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: -0.24 Total: -35.32 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.22 Total: -9.45 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.37 Total: 16.28 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -27.86 -9.21 -37.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878150897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.645 kcal (2) G-P(sol) polarization free energy of solvation -27.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds