Wall clock time and date at job start Tue Mar 31 2020 06:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46918 * 2 1 4 4 N 1.46906 * 109.46924 * 174.72064 * 3 2 1 5 5 C 1.46897 * 110.99727 * 196.06527 * 4 3 2 6 6 C 1.50699 * 109.47118 * 74.14775 * 5 4 3 7 7 C 1.38165 * 120.03342 * 259.99717 * 6 5 4 8 8 C 1.38244 * 120.06123 * 179.97438 * 7 6 5 9 9 C 1.38285 * 120.10667 * 0.02562 * 8 7 6 10 10 C 1.38124 * 120.06230 * 0.02562 * 9 8 7 11 11 C 1.38715 * 120.02753 * 80.00086 * 6 5 4 12 12 O 1.35897 * 120.05432 * 359.97438 * 11 6 5 13 13 C 1.46901 * 110.99856 * 72.11180 * 4 3 2 14 14 C 1.52999 * 109.46845 * 202.02969 * 13 4 3 15 15 C 1.50699 * 115.55271 * 292.24375 * 14 13 4 16 16 H 1.08000 * 120.00322 * 113.99594 * 15 14 13 17 17 C 1.37881 * 120.00111 * 294.00036 * 15 14 13 18 18 N 1.31511 * 120.00258 * 161.26637 * 17 15 14 19 19 Si 1.86802 * 119.99590 * 341.26326 * 17 15 14 20 20 H 1.48503 * 109.47115 * 90.55180 * 19 17 15 21 21 H 1.48507 * 109.46960 * 210.54874 * 19 17 15 22 22 H 1.48499 * 109.47322 * 330.55086 * 19 17 15 23 23 C 1.52997 * 117.49951 * 146.57496 * 14 13 4 24 24 C 1.53004 * 117.49949 * 77.91606 * 14 13 4 25 25 H 1.09003 * 109.47226 * 64.92613 * 1 2 3 26 26 H 1.08999 * 109.47125 * 184.92743 * 1 2 3 27 27 H 1.09002 * 109.47547 * 304.92605 * 1 2 3 28 28 H 1.09000 * 109.47480 * 239.99683 * 2 1 3 29 29 H 1.09007 * 109.47113 * 119.99520 * 2 1 3 30 30 H 1.08996 * 109.47515 * 54.72097 * 3 2 1 31 31 H 1.09002 * 109.46938 * 294.71727 * 3 2 1 32 32 H 1.08999 * 109.47209 * 314.15231 * 5 4 3 33 33 H 1.08998 * 109.47394 * 194.14809 * 5 4 3 34 34 H 1.08001 * 119.96843 * 359.97438 * 7 6 5 35 35 H 1.07993 * 119.94814 * 180.27924 * 8 7 6 36 36 H 1.08008 * 119.97203 * 179.97438 * 9 8 7 37 37 H 1.07997 * 120.03234 * 180.02562 * 10 9 8 38 38 H 0.96698 * 114.00551 * 270.02757 * 12 11 6 39 39 H 1.08998 * 109.47473 * 322.02999 * 13 4 3 40 40 H 1.09003 * 109.47033 * 82.03357 * 13 4 3 41 41 H 0.97004 * 120.00272 * 185.00454 * 18 17 15 42 42 H 1.09003 * 117.49685 * 359.97438 * 23 14 13 43 43 H 1.08995 * 117.50303 * 145.01711 * 23 14 13 44 44 H 1.09004 * 117.49568 * 214.98238 * 24 14 13 45 45 H 1.09002 * 117.49322 * 359.97427 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5034 1.4445 0.1274 5 6 3.9967 2.7741 0.5106 6 6 3.6867 3.0253 1.9638 7 6 2.5974 3.7993 2.3149 8 6 2.3123 4.0296 3.6478 9 6 3.1165 3.4867 4.6331 10 6 4.2073 2.7130 4.2875 11 6 4.4950 2.4796 2.9503 12 8 5.5668 1.7176 2.6077 13 6 4.1405 0.9841 -1.1136 14 6 5.5509 0.4775 -0.8052 15 6 6.5387 1.5292 -0.3703 16 1 6.9385 1.5127 0.6328 17 6 6.9322 2.5126 -1.2531 18 7 7.4829 3.6186 -0.8027 19 14 6.6832 2.2736 -3.0889 20 1 5.3572 2.8138 -3.4830 21 1 7.7506 2.9917 -3.8309 22 1 6.7438 0.8255 -3.4124 23 6 6.0822 -0.6871 -1.6433 24 6 5.6814 -0.9144 -0.1835 25 1 -0.3634 0.4355 -0.9308 26 1 -0.3633 -1.0239 0.0883 27 1 -0.3634 0.5884 0.8426 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6015 1.9830 0.8389 31 1 1.7559 1.9283 -0.9335 32 1 3.5088 3.5329 -0.1013 33 1 5.0746 2.8204 0.3557 34 1 1.9681 4.2248 1.5472 35 1 1.4578 4.6312 3.9202 36 1 2.8919 3.6684 5.6738 37 1 4.8348 2.2889 5.0574 38 1 5.3687 0.7747 2.5250 39 1 3.5509 0.1762 -1.5467 40 1 4.1982 1.8115 -1.8210 41 1 7.6932 4.3403 -1.4157 42 1 5.4267 -1.0926 -2.4140 43 1 7.1461 -0.6928 -1.8798 44 1 6.4819 -1.0695 0.5398 45 1 4.7623 -1.4690 0.0062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878150897.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:43 Heat of formation + Delta-G solvation = -5.602878 kcal Electronic energy + Delta-G solvation = -24567.817540 eV Core-core repulsion = 21357.563193 eV Total energy + Delta-G solvation = -3210.254347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.78832 -39.29033 -37.38090 -37.03009 -34.34773 -33.99975 -32.11216 -30.52856 -28.44938 -27.42947 -26.91818 -23.93366 -23.31922 -23.08429 -21.99908 -21.53653 -20.58529 -18.88289 -18.22298 -17.03600 -16.72564 -16.68640 -16.30579 -16.00398 -15.69150 -15.30282 -15.25765 -14.73503 -14.67432 -14.34973 -14.00708 -13.78914 -13.34606 -13.33745 -13.02329 -12.91503 -12.82441 -12.60377 -12.48045 -12.30262 -12.01613 -11.97193 -11.84872 -11.71311 -11.42393 -11.18349 -10.95548 -10.75500 -10.38166 -10.04522 -9.66873 -9.28239 -9.02920 -8.13068 -6.02356 0.51408 0.51978 1.31769 1.40885 1.52022 2.44489 2.78155 3.07202 3.21652 3.66451 3.69318 4.02160 4.04477 4.06314 4.20496 4.27125 4.35703 4.41144 4.50381 4.52891 4.60601 4.69797 4.71169 4.75935 4.80032 4.87469 4.96100 5.02648 5.04487 5.11749 5.17108 5.22705 5.24797 5.36141 5.44250 5.53164 5.57255 5.62172 5.65461 5.66488 5.85966 5.88679 6.10352 6.31896 6.52276 6.65389 7.01983 7.15791 7.52216 8.98630 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.013183 B = 0.007393 C = 0.005879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.406720 B = 3786.553752 C = 4761.575604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.110 4.110 3 C 0.047 3.953 4 N -0.507 5.507 5 C 0.076 3.924 6 C -0.104 4.104 7 C -0.117 4.117 8 C -0.133 4.133 9 C -0.108 4.108 10 C -0.162 4.162 11 C 0.113 3.887 12 O -0.493 6.493 13 C 0.097 3.903 14 C -0.010 4.010 15 C -0.444 4.444 16 H 0.056 0.944 17 C 0.029 3.971 18 N -0.936 5.936 19 Si 0.898 3.102 20 H -0.286 1.286 21 H -0.306 1.306 22 H -0.225 1.225 23 C -0.201 4.201 24 C -0.148 4.148 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.017 0.983 32 H 0.003 0.997 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.134 0.866 38 H 0.391 0.609 39 H 0.073 0.927 40 H 0.000 1.000 41 H 0.257 0.743 42 H 0.085 0.915 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.785 -5.299 6.129 16.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.081 4.081 4 N -0.230 5.230 5 C -0.051 4.051 6 C -0.105 4.105 7 C -0.136 4.136 8 C -0.150 4.150 9 C -0.126 4.126 10 C -0.181 4.181 11 C 0.068 3.932 12 O -0.304 6.304 13 C -0.031 4.031 14 C -0.011 4.011 15 C -0.482 4.482 16 H 0.074 0.926 17 C -0.169 4.169 18 N -0.576 5.576 19 Si 0.725 3.275 20 H -0.212 1.212 21 H -0.234 1.234 22 H -0.147 1.147 23 C -0.239 4.239 24 C -0.185 4.185 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.035 0.965 32 H 0.021 0.979 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.152 0.848 38 H 0.248 0.752 39 H 0.091 0.909 40 H 0.019 0.981 41 H 0.066 0.934 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.214 -4.973 6.424 16.371 hybrid contribution 0.138 0.698 -1.940 2.066 sum -14.075 -4.275 4.485 15.378 Atomic orbital electron populations 1.21692 0.94294 1.02334 1.01789 1.21448 0.96212 0.95132 1.02052 1.22329 0.88010 0.98224 0.99496 1.61807 1.04406 1.24608 1.32180 1.21396 1.04897 0.88233 0.90543 1.20308 0.95391 0.99395 0.95430 1.21148 0.96339 0.98601 0.97524 1.21358 1.00974 1.00854 0.91850 1.21290 0.93998 0.96591 1.00743 1.21643 0.99195 1.02326 0.94901 1.18650 0.87402 0.95414 0.91721 1.84893 1.31348 1.22692 1.91428 1.21711 0.94679 0.97167 0.89516 1.19247 0.92686 0.88081 1.01105 1.20355 1.21790 1.08049 0.97991 0.92603 1.25493 0.95361 0.94778 1.01239 1.70107 1.46323 1.05357 1.35841 0.86496 0.76422 0.80984 0.83557 1.21241 1.23375 1.14745 1.23098 1.00192 1.06309 0.94283 1.22640 1.01583 0.99823 0.94416 0.92872 0.91475 0.92468 0.92591 0.91652 0.90794 0.96452 0.97908 0.86272 0.85870 0.83229 0.82916 0.84762 0.75171 0.90904 0.98132 0.93408 0.89628 0.91118 0.90551 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.91 71.98 0.71 -2.06 16 2 C -0.11 -2.75 5.92 30.59 0.18 -2.57 16 3 C 0.05 1.43 4.78 86.30 0.41 1.84 16 4 N -0.51 -18.74 4.31 -900.78 -3.88 -22.62 16 5 C 0.08 3.25 4.53 85.56 0.39 3.64 16 6 C -0.10 -3.91 4.92 -19.77 -0.10 -4.00 16 7 C -0.12 -3.60 8.48 22.25 0.19 -3.41 16 8 C -0.13 -3.28 10.04 22.28 0.22 -3.06 16 9 C -0.11 -2.65 10.04 22.25 0.22 -2.43 16 10 C -0.16 -4.88 9.99 22.37 0.22 -4.66 16 11 C 0.11 4.23 6.68 22.51 0.15 4.38 16 12 O -0.49 -20.33 11.38 -92.39 -1.05 -21.38 16 13 C 0.10 3.87 4.56 86.30 0.39 4.27 16 14 C -0.01 -0.42 1.02 -52.93 -0.05 -0.48 16 15 C -0.44 -23.38 6.48 25.60 0.17 -23.21 16 16 H 0.06 3.32 6.79 -2.91 -0.02 3.30 16 17 C 0.03 1.62 4.87 84.66 0.41 2.03 16 18 N -0.94 -57.43 13.95 21.45 0.30 -57.13 16 19 Si 0.90 43.71 25.70 68.60 1.76 45.47 16 20 H -0.29 -13.85 6.96 99.48 0.69 -13.16 16 21 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 22 H -0.22 -9.94 5.46 99.48 0.54 -9.40 16 23 C -0.20 -7.80 7.57 30.62 0.23 -7.57 16 24 C -0.15 -5.38 9.96 30.62 0.30 -5.07 16 25 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.42 6.71 -2.39 -0.02 1.40 16 29 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.07 2.17 6.33 -2.39 -0.02 2.15 16 31 H 0.02 0.54 8.05 -2.39 -0.02 0.52 16 32 H 0.00 0.12 7.88 -2.39 -0.02 0.10 16 33 H 0.12 6.23 3.99 -2.39 -0.01 6.22 16 34 H 0.12 3.44 8.04 -2.91 -0.02 3.42 16 35 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.15 2.62 8.06 -2.91 -0.02 2.60 16 37 H 0.13 3.57 8.06 -2.91 -0.02 3.54 16 38 H 0.39 13.97 9.06 -74.06 -0.67 13.30 16 39 H 0.07 2.54 6.24 -2.39 -0.01 2.53 16 40 H 0.00 0.02 5.98 -2.39 -0.01 0.01 16 41 H 0.26 15.19 8.32 -92.71 -0.77 14.42 16 42 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 43 H 0.07 2.93 7.89 -2.39 -0.02 2.91 16 44 H 0.08 2.85 8.14 -2.38 -0.02 2.83 16 45 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -63.99 351.03 1.32 -62.67 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.12 Total: 35.35 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 4.06 Total: -42.36 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -3.58 Total: -79.75 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -1.05 Total: -21.38 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.76 Total: 45.47 kcal Total: -63.99 1.32 -62.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878150897.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.066 kcal (2) G-P(sol) polarization free energy of solvation -63.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds