Wall clock time and date at job start Tue Mar 31 2020 06:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00088 * 2 1 4 4 C 1.53003 * 109.47257 * 84.84985 * 3 2 1 5 5 C 1.52999 * 109.47175 * 52.99060 * 4 3 2 6 6 O 1.42902 * 109.46836 * 292.99208 * 4 3 2 7 7 C 1.50694 * 109.47036 * 172.99451 * 4 3 2 8 8 C 1.38234 * 120.00288 * 329.72123 * 7 4 3 9 9 C 1.38237 * 120.00118 * 179.81538 * 8 7 4 10 10 C 1.38233 * 120.00181 * 0.39427 * 9 8 7 11 11 C 1.38239 * 119.99703 * 359.86284 * 10 9 8 12 12 C 1.38235 * 119.99985 * 359.94874 * 11 10 9 13 13 C 1.46901 * 111.00355 * 236.04076 * 2 1 3 14 14 C 1.52995 * 109.47362 * 287.47099 * 13 2 1 15 15 C 1.50697 * 115.55028 * 306.14975 * 14 13 2 16 16 H 1.08010 * 119.99813 * 115.82627 * 15 14 13 17 17 C 1.37871 * 120.00340 * 295.54620 * 15 14 13 18 18 N 1.31509 * 120.00292 * 170.51673 * 17 15 14 19 19 Si 1.86802 * 119.99737 * 350.52607 * 17 15 14 20 20 H 1.48497 * 109.47683 * 92.90503 * 19 17 15 21 21 H 1.48502 * 109.47119 * 212.90621 * 19 17 15 22 22 H 1.48506 * 109.47174 * 332.90375 * 19 17 15 23 23 C 1.53006 * 117.49854 * 91.82312 * 14 13 2 24 24 C 1.53004 * 117.49701 * 160.47736 * 14 13 2 25 25 H 1.09000 * 109.46917 * 173.90684 * 1 2 3 26 26 H 1.08998 * 109.47170 * 293.91061 * 1 2 3 27 27 H 1.09003 * 109.46962 * 53.91262 * 1 2 3 28 28 H 1.09008 * 109.47153 * 204.84475 * 3 2 1 29 29 H 1.08998 * 109.47130 * 324.84703 * 3 2 1 30 30 H 1.08995 * 109.46925 * 63.89603 * 5 4 3 31 31 H 1.09000 * 109.46756 * 183.89551 * 5 4 3 32 32 H 1.08996 * 109.47041 * 303.89671 * 5 4 3 33 33 H 0.96708 * 113.99782 * 300.00160 * 6 4 3 34 34 H 1.08001 * 120.00095 * 0.02562 * 8 7 4 35 35 H 1.08003 * 119.99854 * 180.22852 * 9 8 7 36 36 H 1.07998 * 120.00018 * 179.83375 * 10 9 8 37 37 H 1.08000 * 119.99933 * 179.97438 * 11 10 9 38 38 H 1.08002 * 119.99441 * 180.02562 * 12 11 10 39 39 H 1.08998 * 109.47119 * 167.46497 * 13 2 1 40 40 H 1.09008 * 109.46952 * 47.46991 * 13 2 1 41 41 H 0.97005 * 119.99813 * 180.02562 * 18 17 15 42 42 H 1.08998 * 117.49406 * 215.00458 * 23 14 13 43 43 H 1.08994 * 117.49913 * 0.02562 * 23 14 13 44 44 H 1.08991 * 117.50273 * 359.97438 * 24 14 13 45 45 H 1.09002 * 117.49264 * 144.97796 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 2.0573 1.8940 1.4367 5 6 2.8313 0.9021 2.3073 6 8 0.7308 2.0418 1.9473 7 6 2.7546 3.2297 1.4557 8 6 3.7293 3.5141 0.5177 9 6 4.3663 4.7408 0.5328 10 6 4.0343 5.6803 1.4910 11 6 3.0633 5.3939 2.4323 12 6 2.4236 4.1686 2.4148 13 6 1.9955 -0.7661 -1.1375 14 6 1.7740 -2.2600 -0.8926 15 6 2.3116 -2.7916 0.4110 16 1 1.6338 -3.1843 1.1546 17 6 3.6691 -2.7821 0.6521 18 7 4.1260 -3.0686 1.8515 19 14 4.8593 -2.3620 -0.7250 20 1 5.1576 -0.9076 -0.6951 21 1 6.1176 -3.1292 -0.5430 22 1 4.2488 -2.7152 -2.0319 23 6 0.4824 -2.8800 -1.4296 24 6 1.8197 -3.1893 -2.1072 25 1 -0.3633 -1.0219 -0.1091 26 1 -0.3633 0.4165 0.9394 27 1 -0.3633 0.6053 -0.8305 28 1 2.9963 1.3764 -0.4318 29 1 1.3412 2.0117 -0.5917 30 1 3.8626 0.8415 1.9598 31 1 2.8162 1.2395 3.3436 32 1 2.3665 -0.0814 2.2386 33 1 0.1816 2.6576 1.4430 34 1 3.9909 2.7790 -0.2292 35 1 5.1252 4.9643 -0.2024 36 1 4.5338 6.6377 1.5044 37 1 2.8042 6.1277 3.1812 38 1 1.6648 3.9451 3.1501 39 1 3.0622 -0.5697 -1.2452 40 1 1.4771 -0.4665 -2.0484 41 1 5.0810 -3.0616 2.0211 42 1 0.0216 -3.6724 -0.8399 43 1 -0.2093 -2.2238 -1.9577 44 1 2.0070 -2.7364 -3.0807 45 1 2.2389 -4.1852 -1.9634 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878728332.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:29 Heat of formation + Delta-G solvation = 17.247594 kcal Electronic energy + Delta-G solvation = -24222.190125 eV Core-core repulsion = 21012.926649 eV Total energy + Delta-G solvation = -3209.263476 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.88541 -38.02947 -36.83445 -34.62813 -32.24679 -31.93546 -30.83905 -29.08735 -27.20944 -26.58889 -25.16985 -23.29357 -22.58502 -21.48595 -21.36834 -19.74880 -18.82885 -17.47654 -16.36421 -16.07510 -15.39079 -15.04707 -14.77637 -14.59127 -14.39739 -13.98971 -13.64522 -13.40335 -13.17924 -12.93550 -12.73144 -12.54572 -12.06858 -11.76028 -11.66041 -11.62125 -11.41501 -11.23161 -11.00945 -10.83368 -10.78436 -10.52595 -10.49650 -10.32956 -10.17557 -9.63404 -9.29017 -8.94478 -8.90330 -8.68485 -8.50734 -8.25903 -7.42861 -5.94236 -3.88587 1.35676 1.41854 3.31593 3.44173 3.50036 3.79837 4.29498 4.54392 4.54650 4.89237 4.95325 5.00452 5.06064 5.20210 5.31495 5.38116 5.41153 5.51309 5.60533 5.79894 5.86684 5.90831 5.97608 6.04443 6.07110 6.12374 6.16720 6.23904 6.30876 6.45068 6.46613 6.50712 6.51535 6.58760 6.63862 6.67122 6.75611 6.78927 7.01069 7.14080 7.18172 7.33014 7.76909 7.83369 7.93754 7.98551 8.68156 9.09716 9.71274 11.18377 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.005424 C = 0.004947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.768192 B = 5161.285653 C = 5658.581926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.497 5.497 3 C 0.031 3.969 4 C 0.182 3.818 5 C -0.122 4.122 6 O -0.543 6.543 7 C -0.105 4.105 8 C -0.115 4.115 9 C -0.122 4.122 10 C -0.127 4.127 11 C -0.124 4.124 12 C -0.104 4.104 13 C 0.092 3.908 14 C 0.012 3.988 15 C -0.452 4.452 16 H 0.074 0.926 17 C 0.085 3.915 18 N -0.897 5.897 19 Si 0.858 3.142 20 H -0.283 1.283 21 H -0.296 1.296 22 H -0.253 1.253 23 C -0.187 4.187 24 C -0.198 4.198 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.003 0.997 28 H 0.074 0.926 29 H 0.031 0.969 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.106 0.894 33 H 0.364 0.636 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.059 0.941 40 H 0.009 0.991 41 H 0.260 0.740 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.144 15.494 -3.311 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.219 5.219 3 C -0.098 4.098 4 C 0.141 3.859 5 C -0.179 4.179 6 O -0.348 6.348 7 C -0.106 4.106 8 C -0.133 4.133 9 C -0.140 4.140 10 C -0.145 4.145 11 C -0.142 4.142 12 C -0.122 4.122 13 C -0.036 4.036 14 C 0.011 3.989 15 C -0.489 4.489 16 H 0.092 0.908 17 C -0.116 4.116 18 N -0.535 5.535 19 Si 0.687 3.313 20 H -0.210 1.210 21 H -0.223 1.223 22 H -0.177 1.177 23 C -0.224 4.224 24 C -0.236 4.236 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.021 0.979 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.210 0.790 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.077 0.923 40 H 0.027 0.973 41 H 0.070 0.930 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.594 14.787 -2.324 15.191 hybrid contribution 0.499 1.157 -1.996 2.361 sum -2.094 15.944 -4.320 16.651 Atomic orbital electron populations 1.22561 0.87711 1.02015 0.99840 1.61545 1.07249 1.09699 1.43388 1.22875 1.00207 0.90948 0.95759 1.20103 0.82108 0.89823 0.93862 1.21604 0.98791 1.00662 0.96819 1.86644 1.23312 1.67370 1.57426 1.20764 0.97666 0.96663 0.95522 1.21205 0.96335 0.96960 0.98772 1.21126 0.99927 0.93970 0.98991 1.21117 0.98253 0.99312 0.95816 1.21136 0.97046 0.97050 0.98970 1.21029 0.99967 0.93037 0.98171 1.21883 0.97967 0.94832 0.88889 1.19393 0.96523 0.88832 0.94144 1.20029 0.91991 1.38870 0.98005 0.90845 1.24744 0.97870 0.94479 0.94508 1.69919 1.13615 1.49956 1.19975 0.87166 0.80935 0.77973 0.85223 1.20995 1.22321 1.17719 1.22814 0.90792 1.03933 1.04884 1.23068 1.01455 1.02230 0.96876 0.90732 0.90601 0.97891 0.90798 0.95105 0.92238 0.93594 0.87518 0.79019 0.85839 0.86286 0.86463 0.86300 0.85393 0.92294 0.97323 0.93019 0.89876 0.91490 0.91801 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.15 60.06 0.55 1.01 16 2 N -0.50 -9.57 3.12 -242.92 -0.76 -10.33 16 3 C 0.03 0.51 3.92 -3.82 -0.02 0.50 16 4 C 0.18 2.90 1.01 -91.77 -0.09 2.81 16 5 C -0.12 -2.34 8.66 37.16 0.32 -2.02 16 6 O -0.54 -8.09 9.81 -35.23 -0.35 -8.44 16 7 C -0.11 -1.50 4.80 -104.63 -0.50 -2.00 16 8 C -0.11 -1.57 9.14 -39.58 -0.36 -1.93 16 9 C -0.12 -1.45 10.05 -39.58 -0.40 -1.85 16 10 C -0.13 -1.40 10.05 -39.58 -0.40 -1.79 16 11 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 12 C -0.10 -1.34 9.35 -39.58 -0.37 -1.71 16 13 C 0.09 1.90 4.50 -3.83 -0.02 1.88 16 14 C 0.01 0.28 0.62 -155.66 -0.10 0.18 16 15 C -0.45 -12.18 9.04 -34.44 -0.31 -12.49 16 16 H 0.07 2.21 8.06 -52.48 -0.42 1.79 16 17 C 0.09 2.38 5.46 -17.82 -0.10 2.28 16 18 N -0.90 -26.70 13.96 55.43 0.77 -25.92 16 19 Si 0.86 21.09 25.11 -169.99 -4.27 16.82 16 20 H -0.28 -6.81 7.01 56.52 0.40 -6.41 16 21 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.25 -5.90 5.69 56.52 0.32 -5.57 16 23 C -0.19 -3.74 8.36 -26.69 -0.22 -3.96 16 24 C -0.20 -4.16 7.97 -26.69 -0.21 -4.37 16 25 H 0.07 1.37 5.76 -51.93 -0.30 1.07 16 26 H 0.08 1.26 6.25 -51.93 -0.32 0.94 16 27 H 0.00 0.04 7.90 -51.93 -0.41 -0.37 16 28 H 0.07 1.25 5.43 -51.92 -0.28 0.97 16 29 H 0.03 0.46 7.70 -51.93 -0.40 0.06 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.11 2.46 7.29 -51.93 -0.38 2.08 16 33 H 0.36 4.13 9.04 45.56 0.41 4.54 16 34 H 0.12 1.69 6.02 -52.49 -0.32 1.38 16 35 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.13 1.57 7.48 -52.49 -0.39 1.18 16 39 H 0.06 1.28 4.72 -51.93 -0.25 1.03 16 40 H 0.01 0.17 7.99 -51.92 -0.41 -0.25 16 41 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 42 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 43 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 LS Contribution 348.70 15.07 5.25 5.25 Total: -1.00 -29.55 348.70 -8.46 -38.01 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -6.49 Total: 9.89 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: -2.62 Total: -25.28 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.01 Total: -36.25 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: -0.35 Total: -8.44 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.27 Total: 16.82 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.55 -8.46 -38.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878728332.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.260 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds