Wall clock time and date at job start Tue Mar 31 2020 06:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46897 * 110.99813 * 2 1 4 4 C 1.52996 * 109.47371 * 286.59241 * 3 2 1 5 5 C 1.53001 * 109.47384 * 305.41847 * 4 3 2 6 6 O 1.42897 * 109.47006 * 65.42041 * 4 3 2 7 7 C 1.50706 * 109.46961 * 185.41953 * 4 3 2 8 8 C 1.38226 * 120.00178 * 29.73104 * 7 4 3 9 9 C 1.38240 * 120.00081 * 179.76416 * 8 7 4 10 10 C 1.38234 * 119.99480 * 0.50616 * 9 8 7 11 11 C 1.38229 * 120.00209 * 359.74714 * 10 9 8 12 12 C 1.38226 * 120.00124 * 359.97438 * 11 10 9 13 13 C 1.46898 * 111.00214 * 123.95600 * 2 1 3 14 14 C 1.53005 * 109.46778 * 73.98307 * 13 2 1 15 15 C 1.50693 * 115.55179 * 54.22588 * 14 13 2 16 16 H 1.07997 * 120.00143 * 214.04026 * 15 14 13 17 17 C 1.37880 * 120.00237 * 33.76641 * 15 14 13 18 18 N 1.31515 * 119.99675 * 358.49467 * 17 15 14 19 19 Si 1.86799 * 120.00260 * 178.50481 * 17 15 14 20 20 H 1.48502 * 109.47292 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.46960 * 119.99632 * 19 17 15 22 22 H 1.48497 * 109.47267 * 239.99652 * 19 17 15 23 23 C 1.53007 * 117.49721 * 199.89097 * 14 13 2 24 24 C 1.52999 * 117.50031 * 268.55261 * 14 13 2 25 25 H 1.09000 * 109.46255 * 309.39731 * 1 2 3 26 26 H 1.08997 * 109.47095 * 69.39894 * 1 2 3 27 27 H 1.08994 * 109.46776 * 189.39865 * 1 2 3 28 28 H 1.09002 * 109.47518 * 46.60092 * 3 2 1 29 29 H 1.09007 * 109.46857 * 166.59336 * 3 2 1 30 30 H 1.09002 * 109.46946 * 65.10903 * 5 4 3 31 31 H 1.08998 * 109.47101 * 185.11001 * 5 4 3 32 32 H 1.09001 * 109.47395 * 305.11363 * 5 4 3 33 33 H 0.96704 * 114.00190 * 60.00514 * 6 4 3 34 34 H 1.08002 * 120.00224 * 359.97438 * 8 7 4 35 35 H 1.08000 * 120.00188 * 180.22304 * 9 8 7 36 36 H 1.08004 * 119.99605 * 179.72277 * 10 9 8 37 37 H 1.08003 * 119.99747 * 179.97438 * 11 10 9 38 38 H 1.08004 * 120.00109 * 179.97438 * 12 11 10 39 39 H 1.08995 * 109.47185 * 313.98823 * 13 2 1 40 40 H 1.09001 * 109.47332 * 193.97784 * 13 2 1 41 41 H 0.96999 * 119.99958 * 184.98069 * 18 17 15 42 42 H 1.08996 * 117.49672 * 215.00266 * 23 14 13 43 43 H 1.09001 * 117.49924 * 0.02661 * 23 14 13 44 44 H 1.09004 * 117.49769 * 359.97438 * 24 14 13 45 45 H 1.08997 * 117.50350 * 144.97487 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7936 1.9952 -1.3824 5 6 2.4214 1.0922 -2.4460 6 8 0.3955 2.1360 -1.6419 7 6 2.4511 3.3507 -1.4226 8 6 3.5631 3.6030 -0.6414 9 6 4.1691 4.8448 -0.6820 10 6 3.6566 5.8376 -1.4960 11 6 2.5413 5.5869 -2.2733 12 6 1.9389 4.3434 -2.2370 13 6 1.9955 -0.7660 1.1375 14 6 1.8067 -2.2617 0.8762 15 6 2.3795 -2.7724 -0.4207 16 1 1.8832 -3.5702 -0.9531 17 6 3.5340 -2.2172 -0.9305 18 7 4.1190 -1.2221 -0.3003 19 14 4.2670 -2.8781 -2.5164 20 1 3.4251 -3.9907 -3.0250 21 1 4.3176 -1.7925 -3.5285 22 1 5.6414 -3.3769 -2.2564 23 6 1.8460 -3.2003 2.0840 24 6 0.5166 -2.9100 1.3826 25 1 -0.3632 0.6523 0.7942 26 1 -0.3633 0.3616 -0.9619 27 1 -0.3633 -1.0138 0.1678 28 1 1.4665 1.9637 0.7467 29 1 3.0590 1.3524 0.2383 30 1 1.8862 0.1432 -2.4788 31 1 2.3581 1.5789 -3.4192 32 1 3.4672 0.9110 -2.1977 33 1 -0.0682 2.6971 -1.0053 34 1 3.9607 2.8288 -0.0018 35 1 5.0401 5.0408 -0.0743 36 1 4.1273 6.8092 -1.5244 37 1 2.1407 6.3627 -2.9090 38 1 1.0673 4.1476 -2.8440 39 1 1.4595 -0.4851 2.0440 40 1 3.0567 -0.5500 1.2611 41 1 4.8892 -0.7839 -0.6949 42 1 2.2860 -4.1871 1.9403 43 1 2.0059 -2.7522 3.0647 44 1 -0.1974 -2.2710 1.9022 45 1 0.0819 -3.7055 0.7775 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878728333.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:30 Heat of formation + Delta-G solvation = 6.019459 kcal Electronic energy + Delta-G solvation = -24446.871026 eV Core-core repulsion = 21237.120662 eV Total energy + Delta-G solvation = -3209.750364 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.92707 -39.21897 -38.06050 -35.75832 -33.96215 -33.32587 -31.72102 -30.20177 -28.11699 -27.87650 -27.14864 -24.39469 -23.53700 -22.89292 -22.45328 -20.87412 -20.65848 -18.48360 -18.01525 -17.13882 -16.67088 -16.33492 -15.97979 -15.78975 -15.51201 -15.40529 -15.11220 -14.53482 -14.36325 -14.17138 -13.90688 -13.53267 -13.24513 -13.14398 -13.00787 -12.89502 -12.87429 -12.69013 -12.33340 -12.25409 -12.21720 -12.07489 -11.85322 -11.72701 -11.52610 -11.32757 -10.73823 -10.66319 -10.29888 -9.91015 -9.78314 -9.61743 -8.55698 -7.75284 -5.88441 0.45565 0.53770 1.44383 1.50170 1.56253 2.55724 2.90472 3.10686 3.36251 3.46813 3.79891 3.95393 4.00469 4.18821 4.22435 4.26072 4.34188 4.42959 4.56357 4.65928 4.69936 4.73304 4.79252 4.87416 4.90440 4.96589 4.97526 5.02698 5.03818 5.07172 5.19229 5.21774 5.22119 5.46719 5.50406 5.54755 5.59103 5.63387 5.65189 5.75340 5.77397 6.15215 6.16131 6.54436 6.72529 6.84990 6.89720 7.09379 7.71524 9.16981 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.017588 B = 0.005647 C = 0.005000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.585179 B = 4957.288832 C = 5599.213730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.499 5.499 3 C 0.052 3.948 4 C 0.193 3.807 5 C -0.102 4.102 6 O -0.553 6.553 7 C -0.119 4.119 8 C -0.127 4.127 9 C -0.127 4.127 10 C -0.124 4.124 11 C -0.125 4.125 12 C -0.113 4.113 13 C 0.118 3.882 14 C 0.044 3.956 15 C -0.487 4.487 16 H 0.031 0.969 17 C 0.066 3.934 18 N -0.872 5.872 19 Si 0.922 3.078 20 H -0.283 1.283 21 H -0.280 1.280 22 H -0.288 1.288 23 C -0.211 4.211 24 C -0.200 4.200 25 H 0.010 0.990 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.021 0.979 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.379 0.621 34 H 0.116 0.884 35 H 0.138 0.862 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.129 0.871 39 H -0.020 1.020 40 H 0.095 0.905 41 H 0.253 0.747 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.551 14.843 -0.780 15.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.220 5.220 3 C -0.076 4.076 4 C 0.152 3.848 5 C -0.159 4.159 6 O -0.360 6.360 7 C -0.120 4.120 8 C -0.145 4.145 9 C -0.145 4.145 10 C -0.142 4.142 11 C -0.143 4.143 12 C -0.131 4.131 13 C -0.010 4.010 14 C 0.043 3.957 15 C -0.524 4.524 16 H 0.050 0.950 17 C -0.136 4.136 18 N -0.509 5.509 19 Si 0.750 3.250 20 H -0.209 1.209 21 H -0.206 1.206 22 H -0.214 1.214 23 C -0.250 4.250 24 C -0.237 4.237 25 H 0.028 0.972 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.039 0.961 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.228 0.772 34 H 0.134 0.866 35 H 0.156 0.844 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.147 0.853 39 H -0.002 1.002 40 H 0.113 0.887 41 H 0.063 0.937 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.097 0.903 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.040 14.295 -1.701 14.540 hybrid contribution 0.049 -0.200 0.533 0.571 sum -1.991 14.095 -1.168 14.283 Atomic orbital electron populations 1.22603 0.88648 1.00192 1.00765 1.61401 1.06092 1.10698 1.43847 1.22645 1.00417 0.89499 0.95081 1.19770 0.80697 0.89873 0.94466 1.21328 0.99725 0.98866 0.96020 1.86543 1.19985 1.72833 1.56658 1.20569 0.97403 0.95924 0.98104 1.21295 0.96036 0.97921 0.99227 1.21408 1.00372 0.93003 0.99722 1.21494 0.96499 0.99954 0.96230 1.21446 0.96303 0.96893 0.99638 1.21123 1.00538 0.93120 0.98336 1.21572 1.00492 0.91941 0.86949 1.19084 0.93806 0.90707 0.92122 1.20370 1.07831 1.18239 1.05984 0.95021 1.25026 0.96197 0.94786 0.97602 1.69883 1.21322 1.22413 1.37315 0.86104 0.78022 0.78371 0.82488 1.20864 1.20621 1.21407 1.22999 1.01999 1.02036 0.97932 1.22867 0.91102 1.04306 1.05417 0.97157 0.90147 0.93082 0.96091 0.90888 0.92552 0.93628 0.92974 0.77217 0.86615 0.84443 0.83551 0.83716 0.85277 1.00187 0.88681 0.93683 0.91304 0.90765 0.90307 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 8.87 127.69 1.13 2.11 16 2 N -0.50 -20.77 3.07 -922.46 -2.83 -23.60 16 3 C 0.05 1.90 3.78 86.30 0.33 2.23 16 4 C 0.19 6.37 0.98 -11.54 -0.01 6.36 16 5 C -0.10 -3.95 8.51 71.98 0.61 -3.34 16 6 O -0.55 -16.70 9.08 -148.98 -1.35 -18.06 16 7 C -0.12 -3.45 4.81 -19.87 -0.10 -3.55 16 8 C -0.13 -3.59 9.14 22.27 0.20 -3.38 16 9 C -0.13 -2.92 10.05 22.27 0.22 -2.70 16 10 C -0.12 -2.45 10.05 22.27 0.22 -2.23 16 11 C -0.13 -2.56 10.05 22.26 0.22 -2.34 16 12 C -0.11 -2.82 9.35 22.27 0.21 -2.61 16 13 C 0.12 5.40 3.91 86.31 0.34 5.74 16 14 C 0.04 2.11 1.76 -52.93 -0.09 2.02 16 15 C -0.49 -26.22 8.76 25.60 0.22 -26.00 16 16 H 0.03 1.78 7.81 -2.91 -0.02 1.76 16 17 C 0.07 3.45 5.26 84.66 0.45 3.89 16 18 N -0.87 -44.71 10.09 21.45 0.22 -44.50 16 19 Si 0.92 43.20 29.54 68.60 2.03 45.23 16 20 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 21 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 23 C -0.21 -9.46 9.96 30.62 0.30 -9.15 16 24 C -0.20 -8.62 8.39 30.62 0.26 -8.37 16 25 H 0.01 0.35 7.90 -2.39 -0.02 0.33 16 26 H 0.08 2.95 5.92 -2.39 -0.01 2.93 16 27 H 0.05 2.05 5.62 -2.39 -0.01 2.04 16 28 H 0.02 0.72 7.87 -2.39 -0.02 0.70 16 29 H 0.07 2.89 5.72 -2.38 -0.01 2.88 16 30 H 0.06 2.51 7.65 -2.39 -0.02 2.50 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.38 8.92 9.04 -74.05 -0.67 8.25 16 34 H 0.12 3.53 6.04 -2.91 -0.02 3.51 16 35 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 38 H 0.13 3.06 7.48 -2.91 -0.02 3.04 16 39 H -0.02 -0.87 7.97 -2.39 -0.02 -0.89 16 40 H 0.10 4.77 5.45 -2.39 -0.01 4.76 16 41 H 0.25 12.62 8.32 -92.71 -0.77 11.85 16 42 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 43 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 44 H 0.08 3.12 7.79 -2.39 -0.02 3.10 16 45 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -56.56 352.17 2.89 -53.67 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.30 Total: 28.56 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 4.52 Total: -41.31 kcal Atomic # 7 Polarization: -65.48 SS G_CDS: -2.61 Total: -68.09 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -1.35 Total: -18.06 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -56.56 2.89 -53.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878728333.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.693 kcal (2) G-P(sol) polarization free energy of solvation -56.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds