Wall clock time and date at job start Tue Mar 31 2020 06:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47254 * 2 1 4 4 N 1.46901 * 109.47367 * 239.99355 * 2 1 3 5 5 C 1.46901 * 110.99469 * 52.48963 * 4 2 1 6 6 C 1.50705 * 109.47125 * 77.22079 * 5 4 2 7 7 H 1.07996 * 120.00003 * 4.13333 * 6 5 4 8 8 C 1.37868 * 119.99852 * 184.13977 * 6 5 4 9 9 N 1.31513 * 120.00437 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 119.99868 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47055 * 60.00007 * 10 8 6 12 12 H 1.48507 * 109.47003 * 179.97438 * 10 8 6 13 13 H 1.48499 * 109.47402 * 299.99765 * 10 8 6 14 14 C 1.46891 * 111.00135 * 288.53487 * 4 2 1 15 15 C 1.50693 * 109.47441 * 287.02183 * 14 4 2 16 16 C 1.38287 * 120.01270 * 95.16566 * 15 14 4 17 17 C 1.37966 * 119.96303 * 180.02562 * 16 15 14 18 18 C 1.39146 * 120.21287 * 359.91991 * 17 16 15 19 19 C 1.38375 * 119.69583 * 359.96965 * 18 17 16 20 20 C 1.38106 * 120.00770 * 274.89343 * 15 14 4 21 21 C 1.50765 * 121.40200 * 180.27090 * 19 18 17 22 22 C 1.53073 * 109.68133 * 342.17985 * 21 19 18 23 23 C 1.53398 * 108.29671 * 48.21004 * 22 21 19 24 24 O 1.35842 * 118.49520 * 179.77721 * 18 17 16 25 25 H 1.08998 * 109.46977 * 53.59636 * 1 2 3 26 26 H 1.09005 * 109.47206 * 173.59989 * 1 2 3 27 27 H 1.09000 * 109.47401 * 293.59610 * 1 2 3 28 28 H 1.09004 * 109.46829 * 119.99421 * 2 1 3 29 29 H 1.08997 * 109.47189 * 68.44437 * 3 2 1 30 30 H 1.08992 * 109.47233 * 188.44808 * 3 2 1 31 31 H 1.08995 * 109.46626 * 308.44700 * 3 2 1 32 32 H 1.08996 * 109.46829 * 197.21518 * 5 4 2 33 33 H 1.08993 * 109.47342 * 317.21561 * 5 4 2 34 34 H 0.96999 * 120.00557 * 180.02562 * 9 8 6 35 35 H 1.09005 * 109.47480 * 47.02618 * 14 4 2 36 36 H 1.09002 * 109.47071 * 167.02003 * 14 4 2 37 37 H 1.08003 * 120.01827 * 0.08988 * 16 15 14 38 38 H 1.08004 * 119.89336 * 179.97438 * 17 16 15 39 39 H 1.07999 * 119.84233 * 0.02562 * 20 15 14 40 40 H 1.09001 * 109.43451 * 222.11168 * 21 19 18 41 41 H 1.09003 * 109.43509 * 102.24412 * 21 19 18 42 42 H 1.09002 * 109.69782 * 288.50885 * 22 21 19 43 43 H 1.08999 * 109.73086 * 167.93326 * 22 21 19 44 44 H 1.09000 * 109.68717 * 175.56093 * 23 22 21 45 45 H 1.09005 * 109.71609 * 55.02672 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 1.4078 -0.1379 -2.4142 6 6 2.0724 1.1700 -2.7592 7 1 2.9132 1.5183 -2.1778 8 6 1.6069 1.9218 -3.8169 9 7 0.5832 1.4975 -4.5252 10 14 2.4302 3.5433 -4.2441 11 1 3.8572 3.3014 -4.5764 12 1 1.7466 4.1527 -5.4132 13 1 2.3417 4.4645 -3.0828 14 6 1.7842 -2.1395 -1.1048 15 6 2.7439 -2.7407 -0.1106 16 6 2.3524 -2.9285 1.2023 17 6 3.2320 -3.4786 2.1117 18 6 4.5128 -3.8472 1.7121 19 6 4.9011 -3.6603 0.3972 20 6 4.0129 -3.1096 -0.5118 21 6 6.2772 -4.0513 -0.0788 22 6 7.2106 -4.2171 1.1230 23 6 6.5008 -5.0879 2.1676 24 8 5.3519 -4.3813 2.6374 25 1 -0.3633 0.6099 -0.8271 26 1 -0.3634 -1.0213 -0.1146 27 1 -0.3634 0.4114 0.9417 28 1 1.8933 -0.5138 0.8901 29 1 1.8052 1.9109 0.9558 30 1 3.1194 1.4462 -0.1510 31 1 1.5587 1.9980 -0.8048 32 1 1.5365 -0.8393 -3.2385 33 1 0.3447 0.0291 -2.2418 34 1 0.2559 2.0263 -5.2696 35 1 0.7606 -2.3204 -0.7768 36 1 1.9389 -2.5974 -2.0818 37 1 1.3581 -2.6456 1.5153 38 1 2.9251 -3.6243 3.1370 39 1 4.3150 -2.9657 -1.5386 40 1 6.6675 -3.2750 -0.7369 41 1 6.2181 -4.9929 -0.6248 42 1 7.4357 -3.2401 1.5509 43 1 8.1345 -4.7015 0.8073 44 1 7.1758 -5.2861 3.0002 45 1 6.1924 -6.0294 1.7131 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891694207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:34 Heat of formation + Delta-G solvation = -16.219531 kcal Electronic energy + Delta-G solvation = -23511.401093 eV Core-core repulsion = 20300.686374 eV Total energy + Delta-G solvation = -3210.714719 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 289.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.57778 -38.38902 -36.80501 -34.29433 -32.62930 -31.84827 -30.44529 -29.69577 -27.46837 -26.27914 -25.70446 -24.43716 -22.94158 -22.16810 -21.96425 -19.53755 -18.47176 -17.65557 -16.58531 -16.35928 -15.67485 -15.27981 -14.73631 -14.47236 -14.36325 -14.11590 -13.90057 -13.67252 -13.16858 -13.13515 -13.05720 -12.82422 -12.17315 -12.12763 -11.60173 -11.40684 -11.31986 -11.21761 -11.09874 -10.93849 -10.85801 -10.65395 -10.60028 -10.55408 -10.29968 -10.21198 -10.09004 -9.34666 -9.06346 -8.55180 -8.34709 -7.84427 -7.11954 -5.97018 -3.94419 1.52913 1.65339 3.31834 3.35607 3.39941 3.43017 3.90966 4.47073 4.54919 4.61285 4.71838 4.94436 5.07471 5.09242 5.25781 5.30946 5.36865 5.40606 5.49727 5.56970 5.66487 5.77261 5.78259 5.86470 5.91782 5.93855 6.04269 6.11453 6.21283 6.30445 6.39834 6.48452 6.59147 6.61455 6.68750 6.78146 6.96869 6.99045 7.04152 7.27025 7.46845 7.52723 7.55703 7.90618 8.19814 8.29029 8.62358 9.11315 9.66028 11.13220 Molecular weight = 289.18amu Principal moments of inertia in cm(-1) A = 0.021476 B = 0.003993 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.486223 B = 7011.389815 C = 7598.509313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.089 3.911 3 C -0.140 4.140 4 N -0.524 5.524 5 C 0.183 3.817 6 C -0.495 4.495 7 H 0.069 0.931 8 C 0.052 3.948 9 N -0.902 5.902 10 Si 0.892 3.108 11 H -0.277 1.277 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.089 3.911 15 C -0.086 4.086 16 C -0.085 4.085 17 C -0.151 4.151 18 C 0.117 3.883 19 C -0.162 4.162 20 C -0.062 4.062 21 C -0.077 4.077 22 C -0.159 4.159 23 C 0.062 3.938 24 O -0.321 6.321 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.028 0.972 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.020 0.980 33 H 0.010 0.990 34 H 0.260 0.740 35 H 0.035 0.965 36 H 0.074 0.926 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.064 -12.343 11.903 18.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 C -0.197 4.197 4 N -0.248 5.248 5 C 0.059 3.941 6 C -0.534 4.534 7 H 0.087 0.913 8 C -0.148 4.148 9 N -0.542 5.542 10 Si 0.720 3.280 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.203 1.203 14 C -0.039 4.039 15 C -0.087 4.087 16 C -0.103 4.103 17 C -0.169 4.169 18 C 0.073 3.927 19 C -0.162 4.162 20 C -0.081 4.081 21 C -0.114 4.114 22 C -0.197 4.197 23 C -0.013 4.013 24 O -0.235 6.235 25 H 0.092 0.908 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.107 0.893 32 H 0.039 0.961 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.143 0.857 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.120 0.880 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.444 -12.200 11.894 19.016 hybrid contribution -0.373 0.743 -0.503 0.971 sum 8.071 -11.458 11.391 18.060 Atomic orbital electron populations 1.22468 0.98904 1.01093 1.01827 1.21461 0.91696 0.95828 0.93010 1.22056 1.01664 0.95536 1.00451 1.62379 1.59142 0.99527 1.03773 1.19910 0.93886 0.95043 0.85293 1.21288 1.15082 1.03933 1.13092 0.91273 1.24968 0.95298 0.98149 0.96403 1.69943 1.25422 1.38719 1.20131 0.86659 0.79609 0.83952 0.77792 1.20312 1.21539 1.20272 1.21025 0.94675 0.91073 0.97097 1.19852 0.95493 0.98797 0.94536 1.20839 0.99087 0.97786 0.92606 1.20457 0.91209 1.04842 1.00409 1.18599 0.89781 0.96445 0.87903 1.19738 0.97087 1.06102 0.93322 1.20789 0.92329 0.95799 0.99193 1.20442 0.91304 1.02168 0.97461 1.22224 0.99069 1.01560 0.96834 1.22893 0.86033 0.93931 0.98432 1.85961 1.35494 1.68419 1.33666 0.90821 0.93762 0.93650 0.92206 0.95320 0.92835 0.89311 0.96146 0.97205 0.93054 0.94718 0.90725 0.85911 0.85823 0.85671 0.89908 0.90786 0.90458 0.90049 0.87972 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.36 8.37 37.16 0.31 -3.05 16 2 C 0.09 1.71 2.81 -67.71 -0.19 1.52 16 3 C -0.14 -2.80 7.80 37.16 0.29 -2.52 16 4 N -0.52 -10.99 4.39 -229.52 -1.01 -11.99 16 5 C 0.18 4.58 4.52 -4.97 -0.02 4.56 16 6 C -0.50 -13.36 6.69 -34.44 -0.23 -13.59 16 7 H 0.07 1.86 6.01 -52.49 -0.32 1.55 16 8 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 9 N -0.90 -26.31 13.29 55.43 0.74 -25.58 16 10 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.09 1.60 5.02 -4.98 -0.03 1.58 16 15 C -0.09 -1.39 4.97 -104.66 -0.52 -1.91 16 16 C -0.08 -1.24 8.26 -39.66 -0.33 -1.57 16 17 C -0.15 -2.12 9.94 -39.34 -0.39 -2.51 16 18 C 0.12 1.68 6.47 -39.19 -0.25 1.43 16 19 C -0.16 -2.26 5.75 -104.44 -0.60 -2.86 16 20 C -0.06 -0.97 9.34 -39.53 -0.37 -1.34 16 21 C -0.08 -0.84 5.86 -27.81 -0.16 -1.00 16 22 C -0.16 -1.44 6.19 -26.49 -0.16 -1.60 16 23 C 0.06 0.58 7.03 37.36 0.26 0.84 16 24 O -0.32 -4.20 10.27 -19.24 -0.20 -4.39 16 25 H 0.07 1.55 6.32 -51.93 -0.33 1.22 16 26 H 0.04 0.76 6.36 -51.93 -0.33 0.43 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.08 6.08 -51.93 -0.32 0.77 16 29 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 1.11 7.56 -51.93 -0.39 0.71 16 31 H 0.09 2.02 5.81 -51.93 -0.30 1.72 16 32 H 0.02 0.55 7.60 -51.93 -0.39 0.16 16 33 H 0.01 0.27 5.43 -51.93 -0.28 -0.01 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.03 0.60 6.14 -51.93 -0.32 0.28 16 36 H 0.07 1.35 7.62 -51.93 -0.40 0.96 16 37 H 0.12 1.65 7.98 -52.48 -0.42 1.23 16 38 H 0.12 1.53 8.06 -52.48 -0.42 1.10 16 39 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 345.76 15.07 5.21 5.21 Total: -1.00 -29.53 345.76 -9.93 -39.45 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -7.16 Total: 1.54 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -2.49 Total: -20.67 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.27 Total: -37.57 kcal Atomic # 8 Polarization: -4.20 SS G_CDS: -0.20 Total: -4.39 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.53 -9.93 -39.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891694207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.235 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds